mRNA_M-pyrifera_M_contig112411.2592.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112411.2592.1
Unique NamemRNA_M-pyrifera_M_contig112411.2592.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112411.2592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112411contigM-pyrifera_M_contig112411:52..504 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score65.5
Seed ortholog evalue2.5e-08
Seed eggNOG ortholog272624.lpg2526
Hectar predicted targeting categoryother localisation
EggNOG OGs1RE22@1224,1SN9Y@1236,2CCGE@1,2Z7Q5@2
Best tax levelGammaproteobacteria
Best eggNOG OGNA|NA|NA
Exons1
Model size453
Cds size453
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.8646865-CDS-M-pyrifera_M_contig112411:51..5041622815637.8646865-CDS-M-pyrifera_M_contig112411:51..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112411 52..504 -
1692277499.3291173-CDS-M-pyrifera_M_contig112411:51..5041692277499.3291173-CDS-M-pyrifera_M_contig112411:51..504Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112411 52..504 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112411.2592.1prot_M-pyrifera_M_contig112411.2592.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112411 52..504 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112411.2592.1

>prot_M-pyrifera_M_contig112411.2592.1 ID=prot_M-pyrifera_M_contig112411.2592.1|Name=mRNA_M-pyrifera_M_contig112411.2592.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=151bp
MPNELTENISYSFAISKHTLELANKYLIEIKTDINKVGVILKKELGNVDF
NEIAPEKFIQHIINTKNPQNFAECILTSPLSRKMSGYSDNDLAILARIGT
IIPSYVYNDGGHNCSFTNHREPIPCIMGFVSAPLFTEHKGSLDDITLTAN
N
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mRNA from alignment at M-pyrifera_M_contig112411:52..504-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112411.2592.1 ID=mRNA_M-pyrifera_M_contig112411.2592.1|Name=mRNA_M-pyrifera_M_contig112411.2592.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=453bp|location=Sequence derived from alignment at M-pyrifera_M_contig112411:52..504- (Macrocystis pyrifera P11B4 male)
ATGCCAAATGAGCTGACTGAAAATATAAGTTACAGCTTTGCTATTAGCAA
ACATACTCTCGAACTTGCAAACAAATATCTGATCGAAATAAAAACAGATA
TTAACAAAGTTGGGGTGATCTTGAAAAAAGAACTAGGCAACGTGGATTTT
AATGAAATCGCACCAGAAAAATTCATTCAACATATTATCAATACAAAAAA
TCCACAGAATTTTGCTGAGTGCATACTTACGTCACCTTTAAGTAGAAAAA
TGTCTGGATACAGCGATAATGATTTAGCGATACTAGCTCGCATTGGAACT
ATAATTCCAAGCTACGTTTATAATGATGGAGGACATAATTGCTCTTTCAC
CAATCATAGAGAACCAATACCGTGCATAATGGGTTTTGTTTCCGCACCAT
TATTCACTGAACACAAAGGGTCTCTCGATGATATTACACTTACGGCTAAC
AAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112411:52..504-

>mRNA_M-pyrifera_M_contig112411.2592.1 ID=mRNA_M-pyrifera_M_contig112411.2592.1|Name=mRNA_M-pyrifera_M_contig112411.2592.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=906bp|location=Sequence derived from alignment at M-pyrifera_M_contig112411:52..504- (Macrocystis pyrifera P11B4 male)
ATGCCAAATGAGCTGACTGAAAATATAAGTTACAGCTTTGCTATTAGCAA
ACATACTCTCGAACTTGCAAACAAATATCTGATCGAAATAAAAACAGATA
TTAACAAAGTTGGGGTGATCTTGAAAAAAGAACTAGGCAACGTGGATTTT
AATGAAATCGCACCAGAAAAATTCATTCAACATATTATCAATACAAAAAA
TCCACAGAATTTTGCTGAGTGCATACTTACGTCACCTTTAAGTAGAAAAA
TGTCTGGATACAGCGATAATGATTTAGCGATACTAGCTCGCATTGGAACT
ATAATTCCAAGCTACGTTTATAATGATGGAGGACATAATTGCTCTTTCAC
CAATCATAGAGAACCAATACCGTGCATAATGGGTTTTGTTTCCGCACCAT
TATTCACTGAACACAAAGGGTCTCTCGATGATATTACACTTACGGCTAAC
AACATGCCAAATGAGCTGACTGAAAATATAAGTTACAGCTTTGCTATTAG
CAAACATACTCTCGAACTTGCAAACAAATATCTGATCGAAATAAAAACAG
ATATTAACAAAGTTGGGGTGATCTTGAAAAAAGAACTAGGCAACGTGGAT
TTTAATGAAATCGCACCAGAAAAATTCATTCAACATATTATCAATACAAA
AAATCCACAGAATTTTGCTGAGTGCATACTTACGTCACCTTTAAGTAGAA
AAATGTCTGGATACAGCGATAATGATTTAGCGATACTAGCTCGCATTGGA
ACTATAATTCCAAGCTACGTTTATAATGATGGAGGACATAATTGCTCTTT
CACCAATCATAGAGAACCAATACCGTGCATAATGGGTTTTGTTTCCGCAC
CATTATTCACTGAACACAAAGGGTCTCTCGATGATATTACACTTACGGCT
AACAAC
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