mRNA_M-pyrifera_M_contig112403.2591.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112403.2591.1
Unique NamemRNA_M-pyrifera_M_contig112403.2591.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112403.2591.1 vs. uniprot
Match: A0A6P7SVS9_OCTVU (plastin-1 isoform X1 n=4 Tax=Octopus TaxID=6643 RepID=A0A6P7SVS9_OCTVU)

HSP 1 Score: 57.8 bits (138), Expect = 2.750e-8
Identity = 28/56 (50.00%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    7 KFINVVRPGTISEQRLCIKPSPNVWEENNNHELALSGARTLGCHITNIGAEDIRSG 174
            K IN+  P TI E+ +  K +PNV+ ++ N  LAL+ AR++GC+I NIGAEDI+ G
Sbjct:  168 KLINITSPDTIDERGIN-KVNPNVYRKHENLVLALNSARSIGCNIVNIGAEDIKDG 222
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BLAST of mRNA_M-pyrifera_M_contig112403.2591.1 vs. uniprot
Match: A0A812EY21_SEPPH (PLS3 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812EY21_SEPPH)

HSP 1 Score: 55.1 bits (131), Expect = 2.490e-7
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    7 KFINVVRPGTISEQRLCIKPSPNVWEENNNHELALSGARTLGCHITNIGAEDIRSG 174
            K IN+  P TI E+ +  K  PN++  + N  LAL+ AR++GC+I NIGAEDI+ G
Sbjct:  664 KLINITCPETIDERGIN-KNHPNIYRRHENLVLALNSARSIGCNIVNIGAEDIKEG 718
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BLAST of mRNA_M-pyrifera_M_contig112403.2591.1 vs. uniprot
Match: A0A812VU38_SYMMI (FIM3 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812VU38_SYMMI)

HSP 1 Score: 54.3 bits (129), Expect = 4.580e-7
Identity = 24/56 (42.86%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:    7 KFINVVRPGTISEQRLCIKPSPNVWEENNNHELALSGARTLGCHITNIGAEDIRSG 174
            K IN+  P TI E+ L  + S NV+++  N+ LA++ A+T+GC + NIGA+D+  G
Sbjct:    1 KLINLAVPDTIDERALNKRDSLNVYQKTENNNLAVNAAKTIGCQVINIGAQDLIEG 56
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BLAST of mRNA_M-pyrifera_M_contig112403.2591.1 vs. uniprot
Match: T1EFA9_HELRO (Uncharacterized protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1EFA9_HELRO)

HSP 1 Score: 51.2 bits (121), Expect = 5.650e-6
Identity = 26/59 (44.07%), Postives = 36/59 (61.02%), Query Frame = 1 
Query:    7 KFINVVRPGTISEQRLCIKPSP---NVWEENNNHELALSGARTLGCHITNIGAEDIRSG 174
            K IN   P TI E+ + I  S    N+++ + N  LAL+ AR +GCH+ NIG EDI +G
Sbjct:  172 KLINKSAPATIDERAINIPNSTSKLNIYQVHENLTLALNSARVIGCHLVNIGPEDIETG 230
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BLAST of mRNA_M-pyrifera_M_contig112403.2591.1 vs. uniprot
Match: A0A7L3EN31_9PASS (PLST protein (Fragment) n=1 Tax=Chaetops frenatus TaxID=221966 RepID=A0A7L3EN31_9PASS)

HSP 1 Score: 50.8 bits (120), Expect = 7.740e-6
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    4 SKFINVVRPGTISEQRLCIKP-SPNVWEENNNHELALSGARTLGCHITNIGAEDIRSG 174
            SK IN+  P TI E+ +  K  +P + +EN N  LAL+ A  +GCH+ NIGAED+R G
Sbjct:  184 SKMINLSVPDTIDERAINKKKLTPFIIQENLN--LALNSASAIGCHVVNIGAEDLREG 239
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BLAST of mRNA_M-pyrifera_M_contig112403.2591.1 vs. uniprot
Match: A0A6P3HCX5_BISBI (plastin-3-like n=2 Tax=Pecora TaxID=35500 RepID=A0A6P3HCX5_BISBI)

HSP 1 Score: 49.7 bits (117), Expect = 1.360e-5
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    7 KFINVVRPGTISEQRLCIKP-SPNVWEENNNHELALSGARTLGCHITNIGAEDIRSG 174
            K IN+  P TI E+ +  K  +P + +EN N  LAL+ A  +GCH+ NIGAED+R+G
Sbjct:  123 KMINLSVPDTIDERAINKKKLTPFIIQENLN--LALNSASAIGCHVVNIGAEDLRAG 177
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BLAST of mRNA_M-pyrifera_M_contig112403.2591.1 vs. uniprot
Match: A0A0D9S094_CHLSB (Plastin 3 n=3 Tax=Boreoeutheria TaxID=1437010 RepID=A0A0D9S094_CHLSB)

HSP 1 Score: 49.7 bits (117), Expect = 1.940e-5
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    7 KFINVVRPGTISEQRLCIKP-SPNVWEENNNHELALSGARTLGCHITNIGAEDIRSG 174
            K IN+  P TI E+ +  K  +P + +EN N  LAL+ A  +GCH+ NIGAED+R+G
Sbjct:  168 KMINLSVPDTIDERAINKKKLTPFIIQENLN--LALNSASAIGCHVVNIGAEDLRAG 222
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BLAST of mRNA_M-pyrifera_M_contig112403.2591.1 vs. uniprot
Match: UPI000B4F60C7 (plastin-3 n=1 Tax=Meriones unguiculatus TaxID=10047 RepID=UPI000B4F60C7)

HSP 1 Score: 49.7 bits (117), Expect = 1.960e-5
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    7 KFINVVRPGTISEQRLCIKP-SPNVWEENNNHELALSGARTLGCHITNIGAEDIRSG 174
            K IN+  P TI E+ +  K  +P + +EN N  LAL+ A  +GCH+ NIGAED+R+G
Sbjct:   20 KMINLSVPDTIDERAINKKKLTPFIIQENLN--LALNSASAIGCHVVNIGAEDLRAG 74
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BLAST of mRNA_M-pyrifera_M_contig112403.2591.1 vs. uniprot
Match: A0A8B7V2C0_CASCN (plastin-3 n=5 Tax=Eutheria TaxID=9347 RepID=A0A8B7V2C0_CASCN)

HSP 1 Score: 49.7 bits (117), Expect = 1.970e-5
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    7 KFINVVRPGTISEQRLCIKP-SPNVWEENNNHELALSGARTLGCHITNIGAEDIRSG 174
            K IN+  P TI E+ +  K  +P + +EN N  LAL+ A  +GCH+ NIGAED+R+G
Sbjct:   89 KMINLSVPDTIDERAINKKKLTPFIIQENLN--LALNSASAIGCHVVNIGAEDLRAG 143
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BLAST of mRNA_M-pyrifera_M_contig112403.2591.1 vs. uniprot
Match: A0A8C4PNP6_EQUAS (Plastin 3 n=1 Tax=Equus asinus asinus TaxID=83772 RepID=A0A8C4PNP6_EQUAS)

HSP 1 Score: 49.7 bits (117), Expect = 1.970e-5
Identity = 27/57 (47.37%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    7 KFINVVRPGTISEQRLCIKP-SPNVWEENNNHELALSGARTLGCHITNIGAEDIRSG 174
            K IN+  P TI E+ +  K  +P + +EN N  LAL+ A  +GCH+ NIGAED+R+G
Sbjct:  168 KMINLSVPDTIDERAINKKKLTPFIIQENLN--LALNSASAIGCHVVNIGAEDLRAG 222
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112403.2591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P7SVS9_OCTVU2.750e-850.00plastin-1 isoform X1 n=4 Tax=Octopus TaxID=6643 Re... [more]
A0A812EY21_SEPPH2.490e-748.21PLS3 n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0... [more]
A0A812VU38_SYMMI4.580e-742.86FIM3 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
T1EFA9_HELRO5.650e-644.07Uncharacterized protein n=1 Tax=Helobdella robusta... [more]
A0A7L3EN31_9PASS7.740e-648.28PLST protein (Fragment) n=1 Tax=Chaetops frenatus ... [more]
A0A6P3HCX5_BISBI1.360e-547.37plastin-3-like n=2 Tax=Pecora TaxID=35500 RepID=A0... [more]
A0A0D9S094_CHLSB1.940e-547.37Plastin 3 n=3 Tax=Boreoeutheria TaxID=1437010 RepI... [more]
UPI000B4F60C71.960e-547.37plastin-3 n=1 Tax=Meriones unguiculatus TaxID=1004... [more]
A0A8B7V2C0_CASCN1.970e-547.37plastin-3 n=5 Tax=Eutheria TaxID=9347 RepID=A0A8B7... [more]
A0A8C4PNP6_EQUAS1.970e-547.37Plastin 3 n=1 Tax=Equus asinus asinus TaxID=83772 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112403contigM-pyrifera_M_contig112403:355..528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue1.2e-08
Seed eggNOG ortholog3712.Bo7g097130.1
KEGG koko:K17275,ko:K17276
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005856,GO:0005884,GO:0006996,GO:0007010,GO:0007015,GO:0007623,GO:0008092,GO:0008150,GO:0009987,GO:0015629,GO:0016043,GO:0022607,GO:0030029,GO:0030036,GO:0032432,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0048511,GO:0051015,GO:0051017,GO:0051639,GO:0051764,GO:0061572,GO:0071840,GO:0097435,GO:0099080,GO:0099081,GO:0099512,GO:0099513
EggNOG free text desc.actin filament network formation
EggNOG OGsCOG5069@1,KOG0046@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147,ko04812
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.8252609-CDS-M-pyrifera_M_contig112403:354..5281622815637.8252609-CDS-M-pyrifera_M_contig112403:354..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112403 355..528 +
1692277499.3158817-CDS-M-pyrifera_M_contig112403:354..5281692277499.3158817-CDS-M-pyrifera_M_contig112403:354..528Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112403 355..528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112403.2591.1prot_M-pyrifera_M_contig112403.2591.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112403 355..528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112403.2591.1

>prot_M-pyrifera_M_contig112403.2591.1 ID=prot_M-pyrifera_M_contig112403.2591.1|Name=mRNA_M-pyrifera_M_contig112403.2591.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
CSKFINVVRPGTISEQRLCIKPSPNVWEENNNHELALSGARTLGCHITNI
GAEDIRSG
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mRNA from alignment at M-pyrifera_M_contig112403:355..528+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112403.2591.1 ID=mRNA_M-pyrifera_M_contig112403.2591.1|Name=mRNA_M-pyrifera_M_contig112403.2591.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=174bp|location=Sequence derived from alignment at M-pyrifera_M_contig112403:355..528+ (Macrocystis pyrifera P11B4 male)
TGCAGCAAGTTCATCAACGTCGTGCGGCCCGGCACGATCAGTGAGCAGCG
CCTTTGCATCAAGCCGTCCCCCAACGTCTGGGAGGAGAACAACAACCACG
AGCTGGCCCTCTCAGGCGCCAGAACACTCGGATGCCACATCACCAACATC
GGCGCCGAGGACATTCGCTCTGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112403:355..528+

>mRNA_M-pyrifera_M_contig112403.2591.1 ID=mRNA_M-pyrifera_M_contig112403.2591.1|Name=mRNA_M-pyrifera_M_contig112403.2591.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig112403:355..528+ (Macrocystis pyrifera P11B4 male)
TGCAGCAAGTTCATCAACGTCGTGCGGCCCGGCACGATCAGTGAGCAGCG
CCTTTGCATCAAGCCGTCCCCCAACGTCTGGGAGGAGAACAACAACCACG
AGCTGGCCCTCTCAGGCGCCAGAACACTCGGATGCCACATCACCAACATC
GGCGCCGAGGACATTCGCTCTGGCTGCAGCAAGTTCATCAACGTCGTGCG
GCCCGGCACGATCAGTGAGCAGCGCCTTTGCATCAAGCCGTCCCCCAACG
TCTGGGAGGAGAACAACAACCACGAGCTGGCCCTCTCAGGCGCCAGAACA
CTCGGATGCCACATCACCAACATCGGCGCCGAGGACATTCGCTCTGGC
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