mRNA_M-pyrifera_M_contig112397.2588.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112397.2588.1
Unique NamemRNA_M-pyrifera_M_contig112397.2588.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112397.2588.1 vs. uniprot
Match: K1QX00_CRAGI (DPH3-like protein n=1 Tax=Crassostrea gigas TaxID=29159 RepID=K1QX00_CRAGI)

HSP 1 Score: 102 bits (254), Expect = 1.840e-27
Identity = 43/60 (71.67%), Postives = 55/60 (91.67%), Query Frame = 1 
Query:    1 DEIEIEDMEFDEEKQTFYYPCPCGDRFQITVEELQDGEEIAHCPSCTLLLKIIYDEVSLS 180
            DEIEIEDME+DE+ +T+YYPCPCGDRF+IT EEL +GE++A CPSC+LL+K+IYD VS+S
Sbjct:    6 DEIEIEDMEYDEDNETYYYPCPCGDRFEITKEELANGEDVAKCPSCSLLIKVIYDIVSIS 65
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BLAST of mRNA_M-pyrifera_M_contig112397.2588.1 vs. uniprot
Match: L1IH47_GUITC (DPH-type MB domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IH47_GUITC)

HSP 1 Score: 101 bits (251), Expect = 6.370e-27
Identity = 43/59 (72.88%), Postives = 55/59 (93.22%), Query Frame = 1 
Query:    1 DEIEIEDMEFDEEKQTFYYPCPCGDRFQITVEELQDGEEIAHCPSCTLLLKIIYDEVSL 177
            DE+EIEDMEF+EE +TF++PCPCGDRFQITV+EL DGE+IA CPSC+LLL++IYDE ++
Sbjct:    7 DEVEIEDMEFNEELKTFFFPCPCGDRFQITVDELIDGEDIARCPSCSLLLRVIYDEEAI 65
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BLAST of mRNA_M-pyrifera_M_contig112397.2588.1 vs. uniprot
Match: R7T784_CAPTE (DPH-type MB domain-containing protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7T784_CAPTE)

HSP 1 Score: 100 bits (250), Expect = 7.300e-27
Identity = 42/58 (72.41%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 DEIEIEDMEFDEEKQTFYYPCPCGDRFQITVEELQDGEEIAHCPSCTLLLKIIYDEVS 174
            DEIEIEDME+DEE +T+YYPCPCGDRFQI++EEL+ GE++  CPSC+LL+K+IYD VS
Sbjct:    6 DEIEIEDMEYDEETETYYYPCPCGDRFQISLEELEAGEDVGKCPSCSLLIKVIYDPVS 63
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BLAST of mRNA_M-pyrifera_M_contig112397.2588.1 vs. uniprot
Match: A0A7S1DTD5_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DTD5_HEMAN)

HSP 1 Score: 101 bits (252), Expect = 1.340e-26
Identity = 44/59 (74.58%), Postives = 53/59 (89.83%), Query Frame = 1 
Query:    1 DEIEIEDMEFDEEKQTFYYPCPCGDRFQITVEELQDGEEIAHCPSCTLLLKIIYDEVSL 177
            DEIEIED+E+ E  QTFYYPCPCGDRFQI+++EL DGE+IAHCPSC+L L+I+YDE SL
Sbjct:   43 DEIEIEDLEWQESDQTFYYPCPCGDRFQISLDELLDGEDIAHCPSCSLRLRIVYDEESL 101
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BLAST of mRNA_M-pyrifera_M_contig112397.2588.1 vs. uniprot
Match: A0A1S3H040_LINUN (DPH3 homolog n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3H040_LINUN)

HSP 1 Score: 100 bits (249), Expect = 1.740e-26
Identity = 40/55 (72.73%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 DEIEIEDMEFDEEKQTFYYPCPCGDRFQITVEELQDGEEIAHCPSCTLLLKIIYD 165
            DE+EIEDME+DEE +T+YYPCPCGDRF+IT EEL+DGE++A CPSC+L++K+IYD
Sbjct:    6 DEVEIEDMEYDEETETYYYPCPCGDRFEITKEELEDGEDVATCPSCSLIIKVIYD 60
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BLAST of mRNA_M-pyrifera_M_contig112397.2588.1 vs. uniprot
Match: A0A2P6N1Y0_9EUKA (Diphthamide biosynthesis protein 3 n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N1Y0_9EUKA)

HSP 1 Score: 100 bits (249), Expect = 2.440e-26
Identity = 42/59 (71.19%), Postives = 52/59 (88.14%), Query Frame = 1 
Query:    1 DEIEIEDMEFDEEKQTFYYPCPCGDRFQITVEELQDGEEIAHCPSCTLLLKIIYDEVSL 177
            DE+EIED+EFDE+ +TFYYPCPCGDRFQ+T+EEL+ GEEIA CPSC+LL++IIY    L
Sbjct:   31 DEVEIEDLEFDEDSETFYYPCPCGDRFQVTLEELKSGEEIARCPSCSLLIRIIYSPEDL 89
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BLAST of mRNA_M-pyrifera_M_contig112397.2588.1 vs. uniprot
Match: A0A183SXP9_SCHSO (DPH-type MB domain-containing protein n=2 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A183SXP9_SCHSO)

HSP 1 Score: 99.8 bits (247), Expect = 2.980e-26
Identity = 40/55 (72.73%), Postives = 52/55 (94.55%), Query Frame = 1 
Query:    1 DEIEIEDMEFDEEKQTFYYPCPCGDRFQITVEELQDGEEIAHCPSCTLLLKIIYD 165
            DE+EIEDME+DEE++TF+YPCPCGDRFQIT EEL+ GE+IA CPSC+L++++IYD
Sbjct:    6 DEVEIEDMEYDEEEETFFYPCPCGDRFQITKEELESGEDIARCPSCSLMIRVIYD 60
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BLAST of mRNA_M-pyrifera_M_contig112397.2588.1 vs. uniprot
Match: A0A1R1PDX8_ZANCU (Diphthamide biosynthesis protein 3 n=1 Tax=Zancudomyces culisetae TaxID=1213189 RepID=A0A1R1PDX8_ZANCU)

HSP 1 Score: 99.4 bits (246), Expect = 4.990e-26
Identity = 42/55 (76.36%), Postives = 50/55 (90.91%), Query Frame = 1 
Query:    1 DEIEIEDMEFDEEKQTFYYPCPCGDRFQITVEELQDGEEIAHCPSCTLLLKIIYD 165
            DE+EIEDMEFDE+ Q FYYPCPCGDRFQI++EE+  GE+IA CPSC+LLLK+IYD
Sbjct:    5 DEVEIEDMEFDEDLQMFYYPCPCGDRFQISLEEINSGEDIASCPSCSLLLKVIYD 59
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BLAST of mRNA_M-pyrifera_M_contig112397.2588.1 vs. uniprot
Match: A0A6I9VG61_BACDO (DPH3 homolog n=8 Tax=Tephritidae TaxID=7211 RepID=A0A6I9VG61_BACDO)

HSP 1 Score: 99.4 bits (246), Expect = 5.430e-26
Identity = 40/55 (72.73%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:    1 DEIEIEDMEFDEEKQTFYYPCPCGDRFQITVEELQDGEEIAHCPSCTLLLKIIYD 165
            DE+EIEDME+DEE++ +YYPCPCGDRFQIT EEL +GEE+A CPSC+L++K+IYD
Sbjct:    6 DEVEIEDMEYDEEEEVYYYPCPCGDRFQITKEELMEGEEVATCPSCSLIIKVIYD 60
[Close]
BLAST of mRNA_M-pyrifera_M_contig112397.2588.1 vs. uniprot
Match: A0A3P7LRU6_DIBLA (DPH-type MB domain-containing protein n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P7LRU6_DIBLA)

HSP 1 Score: 98.6 bits (244), Expect = 1.100e-25
Identity = 39/58 (67.24%), Postives = 55/58 (94.83%), Query Frame = 1 
Query:    1 DEIEIEDMEFDEEKQTFYYPCPCGDRFQITVEELQDGEEIAHCPSCTLLLKIIYDEVS 174
            DE+EIEDME+DE+++T++YPCPCGD+FQIT EEL++GE+IA CPSC+L++++IYD VS
Sbjct:   16 DEVEIEDMEYDEDEETYFYPCPCGDKFQITKEELENGEDIARCPSCSLMIRVIYDLVS 73
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112397.2588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
K1QX00_CRAGI1.840e-2771.67DPH3-like protein n=1 Tax=Crassostrea gigas TaxID=... [more]
L1IH47_GUITC6.370e-2772.88DPH-type MB domain-containing protein n=1 Tax=Guil... [more]
R7T784_CAPTE7.300e-2772.41DPH-type MB domain-containing protein (Fragment) n... [more]
A0A7S1DTD5_HEMAN1.340e-2674.58Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A1S3H040_LINUN1.740e-2672.73DPH3 homolog n=1 Tax=Lingula unguis TaxID=7574 Rep... [more]
A0A2P6N1Y0_9EUKA2.440e-2671.19Diphthamide biosynthesis protein 3 n=1 Tax=Planopr... [more]
A0A183SXP9_SCHSO2.980e-2672.73DPH-type MB domain-containing protein n=2 Tax=Diph... [more]
A0A1R1PDX8_ZANCU4.990e-2676.36Diphthamide biosynthesis protein 3 n=1 Tax=Zancudo... [more]
A0A6I9VG61_BACDO5.430e-2672.73DPH3 homolog n=8 Tax=Tephritidae TaxID=7211 RepID=... [more]
A0A3P7LRU6_DIBLA1.100e-2567.24DPH-type MB domain-containing protein n=1 Tax=Dibo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112397contigM-pyrifera_M_contig112397:359..538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue1.9e-16
Seed eggNOG ortholog55529.EKX35581
Preferred nameDPH3
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00162,ko:K15455
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0002097,GO:0002098,GO:0002791,GO:0002792,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006091,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006417,GO:0006448,GO:0006464,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008270,GO:0009055,GO:0009058,GO:0009451,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016070,GO:0016491,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0022900,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032268,GO:0032879,GO:0032880,GO:0034248,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050708,GO:0050709,GO:0050789,GO:0050794,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051098,GO:0051099,GO:0051171,GO:0051223,GO:0051224,GO:0051246,GO:0055114,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070201,GO:0071704,GO:0080090,GO:0090087,GO:0090304,GO:1900247,GO:1901360,GO:1901564,GO:1903530,GO:1903531,GO:1904950,GO:2000112,GO:2000765
EggNOG free text desc.peptidyl-diphthamide biosynthetic process from peptidyl-histidine
EggNOG OGsCOG5216@1,KOG2923@2759
Ec32 ortholog descriptionHSP40/DnaJ and Zinc finger domain protein
Ec32 orthologEc-11_003620.1
EC1.2.4.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03012,ko03016
Exons1
Model size180
Cds size159
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.5253973-UTR-M-pyrifera_M_contig112397:358..3791622815637.5253973-UTR-M-pyrifera_M_contig112397:358..379Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112397 359..379 +
1692277499.1374388-UTR-M-pyrifera_M_contig112397:358..3791692277499.1374388-UTR-M-pyrifera_M_contig112397:358..379Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112397 359..379 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.5349736-CDS-M-pyrifera_M_contig112397:379..5381622815637.5349736-CDS-M-pyrifera_M_contig112397:379..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112397 380..538 +
1692277499.1498652-CDS-M-pyrifera_M_contig112397:379..5381692277499.1498652-CDS-M-pyrifera_M_contig112397:379..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112397 380..538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112397.2588.1prot_M-pyrifera_M_contig112397.2588.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112397 380..538 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112397.2588.1

>prot_M-pyrifera_M_contig112397.2588.1 ID=prot_M-pyrifera_M_contig112397.2588.1|Name=mRNA_M-pyrifera_M_contig112397.2588.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=53bp
MEFDEEKQTFYYPCPCGDRFQITVEELQDGEEIAHCPSCTLLLKIIYDEV
SLS
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mRNA from alignment at M-pyrifera_M_contig112397:359..538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112397.2588.1 ID=mRNA_M-pyrifera_M_contig112397.2588.1|Name=mRNA_M-pyrifera_M_contig112397.2588.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=180bp|location=Sequence derived from alignment at M-pyrifera_M_contig112397:359..538+ (Macrocystis pyrifera P11B4 male)
GACGAAATCGAGATAGAGGACATGGAGTTTGATGAGGAGAAGCAGACGTT
CTACTACCCCTGCCCTTGTGGTGATCGCTTCCAGATCACCGTGGAGGAGC
TGCAGGATGGCGAGGAGATCGCCCACTGTCCTAGCTGCACCCTCCTCTTG
AAGATCATCTACGACGAGGTCAGCCTCTCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112397:359..538+

>mRNA_M-pyrifera_M_contig112397.2588.1 ID=mRNA_M-pyrifera_M_contig112397.2588.1|Name=mRNA_M-pyrifera_M_contig112397.2588.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=318bp|location=Sequence derived from alignment at M-pyrifera_M_contig112397:359..538+ (Macrocystis pyrifera P11B4 male)
ATGGAGTTTGATGAGGAGAAGCAGACGTTCTACTACCCCTGCCCTTGTGG
TGATCGCTTCCAGATCACCGTGGAGGAGCTGCAGGATGGCGAGGAGATCG
CCCACTGTCCTAGCTGCACCCTCCTCTTGAAGATCATCTACGACGAGGTC
AGCCTCTCCATGGAGTTTGATGAGGAGAAGCAGACGTTCTACTACCCCTG
CCCTTGTGGTGATCGCTTCCAGATCACCGTGGAGGAGCTGCAGGATGGCG
AGGAGATCGCCCACTGTCCTAGCTGCACCCTCCTCTTGAAGATCATCTAC
GACGAGGTCAGCCTCTCC
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