mRNA_M-pyrifera_M_contig112395.2587.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112395.2587.1
Unique NamemRNA_M-pyrifera_M_contig112395.2587.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112395.2587.1 vs. uniprot
Match: A0A7S1C6S5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6S5_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.710e-24
Identity = 57/137 (41.61%), Postives = 83/137 (60.58%), Query Frame = 1
Query:    1 DWAEMMLQYGYLLQFGAAFPLAAVFCLLNNVIELRSDAFKMFYTQQRPNGRVTSGIGIWHEILEFMSVMAVIINSGIIVFTSTQLETAVAGIVLNYAWKLGLVVAFEHALLLFKWLLAVTINDVPVKTRQIMKKREH 411
            D+AEM++QYGY++ F AAFPLA +F  +NNV E+R++ F M    QRP     + +G W  I+E +S+M V+ N  I++  STQL+    G  L+   K G+VV  EH L+L K  LA  I+D PV     +K+  +
Sbjct: 1088 DYAEMVIQYGYVVMFAAAFPLAPLFAFINNVFEMRAEVFLMCDVNQRPVSERAATVGAWMSIIEVLSLMGVLTNCAILMLASTQLDKVFTGTALDDLGKFGIVVGLEHFLVLTKISLAHFISDEPVWVTNKLKRARY 1224          
BLAST of mRNA_M-pyrifera_M_contig112395.2587.1 vs. uniprot
Match: H3GJM8_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJM8_PHYRM)

HSP 1 Score: 103 bits (256), Expect = 5.660e-24
Identity = 57/138 (41.30%), Postives = 88/138 (63.77%), Query Frame = 1
Query:    1 DWAEMMLQYGYLLQFGAAFPLAAVFCLLNNVIELRSDAFKMFYTQQRPNGRVTSGIGIWHEILEFMSVMAVIINSGIIVFTSTQLETAVAGIVLNYAWKLGLVVAFEHALLLFKWLLAVTINDVPVKTRQ-IMKKREH 411
            D+ EM++Q+GY+  F  AFPLA +  LLNN++ELR+DAFK+ +T+QRP     SGIG+W  +L+ MSV+AV+ N   + ++++ LE A   +      K+ +V   EH+LLL K  LA  +  VP    + + ++REH
Sbjct:  118 DYTEMLVQFGYVSFFSLAFPLAPLLALLNNLLELRTDAFKLCHTRQRPLAHKASGIGVWLHVLQIMSVLAVLTNCFHLAYSTSLLERAFPSV--TGTQKVWIVFGIEHSLLLVKVWLACVVPSVPRDVAERLRREREH 253          
BLAST of mRNA_M-pyrifera_M_contig112395.2587.1 vs. uniprot
Match: A0A7S1U393_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U393_9STRA)

HSP 1 Score: 106 bits (264), Expect = 6.500e-24
Identity = 61/137 (44.53%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    1 DWAEMMLQYGYLLQFGAAFPLAAVFCLLNNVIELRSDAFKMFYTQQRPNGRVTSGIGIWHEILEFMSVMAVIINSGIIVFTSTQLETAVAGIVLNYAWKLGLV-VAFEHALLLFKWLLAVTINDVPVKTRQIMKKRE 408
            D+ E+++QYGY   F AAFPLA V   +NN IE+R D FK+ Y  +RP  R    IG W  IL+F+ VMAVI N+GII FT   L+    G          L+ +AFEHALL+ ++LL+V + DVP +T+  +++ E
Sbjct:  561 DYLELVIQYGYATLFVAAFPLAPVLSFVNNWIEIRVDGFKLCYLSKRPEPRGAQDIGTWQTILDFIGVMAVITNAGIICFTGDFLDDVFEGSDAEQLSSRFLIFLAFEHALLMLQFLLSVFVEDVPDRTQIQLERAE 697          
BLAST of mRNA_M-pyrifera_M_contig112395.2587.1 vs. uniprot
Match: A0A2D4BD95_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BD95_PYTIN)

HSP 1 Score: 106 bits (264), Expect = 6.670e-24
Identity = 58/138 (42.03%), Postives = 88/138 (63.77%), Query Frame = 1
Query:    1 DWAEMMLQYGYLLQFGAAFPLAAVFCLLNNVIELRSDAFKMFYTQQRPNGRVTSGIGIWHEILEFMSVMAVIINSGIIVFTSTQLETAVAGIVLNYAWKLGLVVAFEHALLLFKWLLAVTINDVPVKTRQ-IMKKREH 411
            D+ EM++Q+GY+  F  AFPLA +  L NNV+ELR DAFK+ + +QRP  R  SGIG+W ++L+ MSV+AV+ N   I FT++ +E  V  +  + A K+ +V A EH LL  K  + V +  +P   +  + ++REH
Sbjct:  719 DYTEMLIQFGYVTFFSLAFPLAPLLALCNNVLELRMDAFKLCHAKQRPIARKASGIGVWLDVLQLMSVLAVLTNCLHIAFTTSLVERLVPSLAGSGASKVWVVFAVEHLLLALKAWMTVVVPAMPSAVKHSVRREREH 856          
BLAST of mRNA_M-pyrifera_M_contig112395.2587.1 vs. uniprot
Match: A0A811KSF6_9BILA (Anoctamin n=1 Tax=Bursaphelenchus okinawaensis TaxID=465554 RepID=A0A811KSF6_9BILA)

HSP 1 Score: 103 bits (258), Expect = 4.220e-23
Identity = 61/142 (42.96%), Postives = 87/142 (61.27%), Query Frame = 1
Query:    1 DWAEMMLQYGYLLQFGAAFPLAAVFCLLNNVIELRSDAFKMFYTQQRPNGRVTSGIGIWHEILEFMSVMAVIINSGIIVFTSTQLETAVAGIVLNYAWKLGLVVAFEHALLLFKWLLAVTINDVPVKTRQIMKKREHDERVA 426
            D+ EM +Q+GY+L F  AFPLAAVFCL +N++E+R DAFK+    QRP GR    IG W + +E M V+ V++N  +I   S  ++  + G  L++  ++ LVV  EH +L  K+LL + I DVP+  R    K EH  R A
Sbjct:  556 DYLEMFIQFGYVLLFSPAFPLAAVFCLFSNMLEIRVDAFKLCNAVQRPFGRQVKNIGAWQKAMEIMGVLGVVVNCALI-GQSGLVQRLLPG--LSFGGQVLLVVILEHVVLAAKFLLDMAIPDVPLWIRVQTAKMEHWRREA 694          
BLAST of mRNA_M-pyrifera_M_contig112395.2587.1 vs. uniprot
Match: A0A7I8XEC5_BURXY (Anoctamin n=2 Tax=Bursaphelenchus xylophilus TaxID=6326 RepID=A0A7I8XEC5_BURXY)

HSP 1 Score: 103 bits (257), Expect = 5.860e-23
Identity = 61/142 (42.96%), Postives = 87/142 (61.27%), Query Frame = 1
Query:    1 DWAEMMLQYGYLLQFGAAFPLAAVFCLLNNVIELRSDAFKMFYTQQRPNGRVTSGIGIWHEILEFMSVMAVIINSGIIVFTSTQLETAVAGIVLNYAWKLGLVVAFEHALLLFKWLLAVTINDVPVKTRQIMKKREHDERVA 426
            D+ EM +Q+GY+L F  AFPLAAVFCL +N++E+R DAFK+    QRP GR    IG W + +E M V+ V++N  +I   S  ++  + G  L++  ++ LVV  EH +L  K+LL + I DVP+  R    K EH  R A
Sbjct:  705 DYLEMFIQFGYVLLFSPAFPLAAVFCLFSNMLEIRVDAFKLCNAVQRPFGRQVKNIGAWQKAMEIMGVLGVVVNCALI-GQSGLVQRLLPG--LSFGGQVLLVVILEHLVLAAKFLLDMAIPDVPLWIRVQTAKMEHWRREA 843          
BLAST of mRNA_M-pyrifera_M_contig112395.2587.1 vs. uniprot
Match: A0A1V9YGE4_9STRA (Anoctamin n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YGE4_9STRA)

HSP 1 Score: 103 bits (256), Expect = 7.880e-23
Identity = 59/134 (44.03%), Postives = 88/134 (65.67%), Query Frame = 1
Query:    1 DWAEMMLQYGYLLQFGAAFPLAAVFCLLNNVIELRSDAFKMFYTQQRPNGRVTSGIGIWHEILEFMSVMAVIINSGIIVFTSTQLETAVAGIVLNYAWKLGLVVAFEHALLLFKWLLAVTINDVPVKTRQIMKK 402
            D+ EM++Q+GY+  F  AFPLA +  LLNN++ LR+DAFK+ +T+QRP  R  SGIGIW  +L+ M+ +AV+ N   + FT+TQ+E  V GI  + A K+ +V A EH +LL +  +A     VP  T+++  K
Sbjct:  644 DYTEMLIQFGYVGFFSIAFPLAPLLALLNNLVALRADAFKLCHTKQRPIARKASGIGIWFPVLQAMAALAVVTNCLHVAFTTTQIERLVPGI--SPANKVWVVFAAEHLVLLLQVAIACA---VPSMTKEVKDK 772          
BLAST of mRNA_M-pyrifera_M_contig112395.2587.1 vs. uniprot
Match: A0A1V9ZXU1_9STRA (Anoctamin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZXU1_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.980e-22
Identity = 62/134 (46.27%), Postives = 86/134 (64.18%), Query Frame = 1
Query:    1 DWAEMMLQYGYLLQFGAAFPLAAVFCLLNNVIELRSDAFKMFYTQQRPNGRVTSGIGIWHEILEFMSVMAVIINSGIIVFTSTQLETAVAGIVLNYAWKLGLVVAFEHALLLFKWLLAVTINDVPVKTRQIMKK 402
            D+ EM++Q+GY+  F  AFPLA    L+NN+I LR+DAFK+ YT+QRP    TSGIGIW  +L+ M+V+AVI N   I FT+TQ+E     I  + A K+ +V A EH++LL +  +A  I   P  T+ I  K
Sbjct:  595 DYTEMLIQFGYVSFFSIAFPLAPFLALVNNLISLRADAFKLCYTKQRPIALKTSGIGIWFPVLQLMTVLAVITNCLHIAFTTTQIEHYFPKI--SSANKVWVVFAAEHSILLLQVWIAFVI---PSMTKDIRDK 723          
BLAST of mRNA_M-pyrifera_M_contig112395.2587.1 vs. uniprot
Match: A0A7R9Y9L2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9L2_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.990e-22
Identity = 60/142 (42.25%), Postives = 84/142 (59.15%), Query Frame = 1
Query:    1 DWAEMMLQYGYLLQFGAAFPLAAVFCLLNNVIELRSDAFKMFYTQQRPNGRVTSGIGIWHEILEFMSVMAVIINSGIIVFTSTQLETAVAGIVLNYAWKLGLVVAFEHALLLFKWLLAVTINDVPVKTR-QIMKKREHDERV 423
            D+ E+++QYGY   F AAFPLA V   +NN IE+R D FK+ Y  +RP  R    IG W  IL+ +  +AVI+N GII FT   L+          A +  + +AFEH LL+ K+LL+V + DVP  T  QI + + + E+V
Sbjct:  606 DYLELIIQYGYATLFVAAFPLAPVMSFVNNWIEIRVDGFKLCYLSRRPEPRAAQDIGTWQMILDVLGTVAVIVNVGIICFTGDFLDGLPGNQSEQLAGRFLIFLAFEHVLLVLKFLLSVFVPDVPEATEIQIERAQFYTEKV 747          
BLAST of mRNA_M-pyrifera_M_contig112395.2587.1 vs. uniprot
Match: A0A6A3TFL4_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3TFL4_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.410e-22
Identity = 55/142 (38.73%), Postives = 87/142 (61.27%), Query Frame = 1
Query:    1 DWAEMMLQYGYLLQFGAAFPLAAVFCLLNNVIELRSDAFKMFYTQQRPNGRVTSGIGIWHEILEFMSVMAVIINSGIIVFTSTQLETAVAGIVLNYAWKLGLVVAFEHALLLFKWLLAVTINDVPVKTRQIMKKREHDERVA 426
            D+ EM++Q+GY+  F  AFPLA +  LLNNV+ELR+DAFK+ +T+QRP     SGIG+W  +L+ MSV+AV+ N   + ++++ LE A+  +      K+ +V   EH +LL K      +  VP   R++ ++   +  VA
Sbjct:  118 DYTEMLVQFGYVSFFSLAFPLAPLLALLNNVLELRTDAFKLCHTRQRPLAHKASGIGVWLHVLQVMSVLAVLTNCFNLAYSTSLLERALPSV--TPTQKVWIVFGIEHLMLLIKVWFDCVVPSVP---REVSERLRREREVA 254          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112395.2587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C6S5_9STRA3.710e-2441.61Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
H3GJM8_PHYRM5.660e-2441.30Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A7S1U393_9STRA6.500e-2444.53Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2D4BD95_PYTIN6.670e-2442.03Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A811KSF6_9BILA4.220e-2342.96Anoctamin n=1 Tax=Bursaphelenchus okinawaensis Tax... [more]
A0A7I8XEC5_BURXY5.860e-2342.96Anoctamin n=2 Tax=Bursaphelenchus xylophilus TaxID... [more]
A0A1V9YGE4_9STRA7.880e-2344.03Anoctamin n=1 Tax=Achlya hypogyna TaxID=1202772 Re... [more]
A0A1V9ZXU1_9STRA1.980e-2246.27Anoctamin n=1 Tax=Thraustotheca clavata TaxID=7455... [more]
A0A7R9Y9L2_9STRA1.990e-2242.25Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6A3TFL4_9STRA2.410e-2238.73Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112395contigM-pyrifera_M_contig112395:23..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeNematoda
Seed ortholog score101.7
Seed ortholog evalue2.9e-19
Seed eggNOG ortholog6326.BUX.s00036.124
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Calcium-activated chloride channel
EggNOG OGs1KYAP@119089,38FVF@33154,3BCCI@33208,3CRYT@33213,40FCT@6231,KOG2513@1,KOG2513@2759
COG Functional cat.D
Best tax levelChromadorea
Best eggNOG OGNA|NA|NA
Exons2
Model size426
Cds size414
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112395.2587.1prot_M-pyrifera_M_contig112395.2587.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112395 23..493 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.4636173-CDS-M-pyrifera_M_contig112395:22..1781622815637.4636173-CDS-M-pyrifera_M_contig112395:22..178Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112395 23..178 -
1692277499.0956335-CDS-M-pyrifera_M_contig112395:22..1781692277499.0956335-CDS-M-pyrifera_M_contig112395:22..178Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112395 23..178 -
1622815637.4799771-CDS-M-pyrifera_M_contig112395:235..4931622815637.4799771-CDS-M-pyrifera_M_contig112395:235..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112395 236..493 -
1692277499.1144724-CDS-M-pyrifera_M_contig112395:235..4931692277499.1144724-CDS-M-pyrifera_M_contig112395:235..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112395 236..493 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.492585-UTR-M-pyrifera_M_contig112395:493..5051622815637.492585-UTR-M-pyrifera_M_contig112395:493..505Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112395 494..505 -
1692277499.1279051-UTR-M-pyrifera_M_contig112395:493..5051692277499.1279051-UTR-M-pyrifera_M_contig112395:493..505Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112395 494..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112395.2587.1

>prot_M-pyrifera_M_contig112395.2587.1 ID=prot_M-pyrifera_M_contig112395.2587.1|Name=mRNA_M-pyrifera_M_contig112395.2587.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
MMLQYGYLLQFGAAFPLAAVFCLLNNVIELRSDAFKMFYTQQRPNGRVTS
GIGIWHEILEFMSVMAVIINSGIIVFTSTQLETAVAGIVLNYAWKLGLVV
AFEHALLLFKWLLAVTINDVPVKTRQIMKKREHDERVA
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mRNA from alignment at M-pyrifera_M_contig112395:23..505-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112395.2587.1 ID=mRNA_M-pyrifera_M_contig112395.2587.1|Name=mRNA_M-pyrifera_M_contig112395.2587.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig112395:23..505- (Macrocystis pyrifera P11B4 male)
GACTGGGCAGAGATGATGCTGCAGTACGGCTACCTGCTGCAGTTCGGCGC TGCCTTCCCGCTTGCGGCAGTGTTCTGCTTGCTGAACAACGTGATCGAGC TGCGGTCGGACGCCTTCAAGATGTTCTACACCCAGCAGCGGCCCAACGGC CGCGTGACCTCCGGCATTGGCATCTGGCACGAAATCCTCGAGTTCATGTC GGTGATGGCCGTCATCATCAACAGTGGCATTATCGTTTTCACCAGCACAC AGCTGGAGACGGCGGTGGCTGTCTTCATGCCGCTGCTCAACACCTACGTT GCGCCCCTGCTGGCGACCGGCGAGGAGGGCATTGTGCTGAACTACGCCTG GAAGCTGGGCCTTGTCGTCGCATTCGAGCATGCGCTGCTGCTCTTCAAGT GGCTGCTAGCTGTCACCATCAACGATGTGCCCGTCAAGACCCGCCAGATC ATGAAGAAGCGCGAGCACGACGAGCGCGTCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112395:23..505-

>mRNA_M-pyrifera_M_contig112395.2587.1 ID=mRNA_M-pyrifera_M_contig112395.2587.1|Name=mRNA_M-pyrifera_M_contig112395.2587.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig112395:23..505- (Macrocystis pyrifera P11B4 male)
ATGATGCTGCAGTACGGCTACCTGCTGCAGTTCGGCGCTGCCTTCCCGCT
TGCGGCAGTGTTCTGCTTGCTGAACAACGTGATCGAGCTGCGGTCGGACG
CCTTCAAGATGTTCTACACCCAGCAGCGGCCCAACGGCCGCGTGACCTCC
GGCATTGGCATCTGGCACGAAATCCTCGAGTTCATGTCGGTGATGGCCGT
CATCATCAACAGTGGCATTATCGTTTTCACCAGCACACAGCTGGAGACGG
CGGTGGCTATGATGCTGCAGTACGGCTACCTGCTGCAGTTCGGCGCTGCC
TTCCCGCTTGCGGCAGTGTTCTGCTTGCTGAACAACGTGATCGAGCTGCG
GTCGGACGCCTTCAAGATGTTCTACACCCAGCAGCGGCCCAACGGCCGCG
TGACCTCCGGCATTGGCATCTGGCACGAAATCCTCGAGTTCATGTCGGTG
ATGGCCGTCATCATCAACAGTGGCATTATCGTTTTCACCAGCACACAGCT
GGAGACGGCGGTGGCTGGCATTGTGCTGAACTACGCCTGGAAGCTGGGCC
TTGTCGTCGCATTCGAGCATGCGCTGCTGCTCTTCAAGTGGCTGCTAGCT
GTCACCATCAACGATGTGCCCGTCAAGACCCGCCAGATCATGAAGAAGCG
CGAGCACGACGAGCGCGTCGCCGGCATTGTGCTGAACTACGCCTGGAAGC
TGGGCCTTGTCGTCGCATTCGAGCATGCGCTGCTGCTCTTCAAGTGGCTG
CTAGCTGTCACCATCAACGATGTGCCCGTCAAGACCCGCCAGATCATGAA
GAAGCGCGAGCACGACGAGCGCGTCGCC
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