mRNA_M-pyrifera_M_contig11235.2583.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11235.2583.1
Unique NamemRNA_M-pyrifera_M_contig11235.2583.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11235.2583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11235contigM-pyrifera_M_contig11235:6994..7599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size606
Cds size384
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.2797563-UTR-M-pyrifera_M_contig11235:6993..72151622815637.2797563-UTR-M-pyrifera_M_contig11235:6993..7215Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11235 6994..7215 +
1692277499.004742-UTR-M-pyrifera_M_contig11235:6993..72151692277499.004742-UTR-M-pyrifera_M_contig11235:6993..7215Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11235 6994..7215 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.289831-CDS-M-pyrifera_M_contig11235:7215..75991622815637.289831-CDS-M-pyrifera_M_contig11235:7215..7599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11235 7216..7599 +
1692277499.0143483-CDS-M-pyrifera_M_contig11235:7215..75991692277499.0143483-CDS-M-pyrifera_M_contig11235:7215..7599Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11235 7216..7599 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11235.2583.1prot_M-pyrifera_M_contig11235.2583.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11235 7216..7599 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11235.2583.1

>prot_M-pyrifera_M_contig11235.2583.1 ID=prot_M-pyrifera_M_contig11235.2583.1|Name=mRNA_M-pyrifera_M_contig11235.2583.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=128bp
MYQVYKRARLPLCAELVGTNLCTGRVSSISTLQVGPDQPDPRPNPCPNPN
PNPVGGSRSAGAVTRLRRVFWWRFSILAAERLALTNKTRTLHIVLCRPVL
HIGRVRRRGKETMLKTFVAYRKPIRSTA
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mRNA from alignment at M-pyrifera_M_contig11235:6994..7599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11235.2583.1 ID=mRNA_M-pyrifera_M_contig11235.2583.1|Name=mRNA_M-pyrifera_M_contig11235.2583.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig11235:6994..7599+ (Macrocystis pyrifera P11B4 male)
ATTTCATATTAGCTATTGATAGCGCCTTCTGTACACGAGCAACTTCTTCG
TTACTTCGCCTGATCTGAACCGACGACCTGAAACGGAGATAAACAATGGT
CGAGCAGTTCCGTAGACCTGTCAGAACACTTTTTACTTTTTACCCTTTCG
TGAAGTTGTCTTTCGTTATTGCGCTTCACTCTCTGCTACGTACCGCCGTT
GTTGCCATGTGGCAGCCACTACATGTACCAGGTATACAAACGCGCGCGGC
TTCCGCTGTGTGCAGAACTGGTCGGCACAAATCTTTGTACAGGGCGTGTG
TCGTCAATTTCAACCTTACAGGTCGGCCCAGACCAACCCGACCCCAGGCC
TAACCCCTGCCCTAACCCGAACCCCAATCCTGTGGGGGGCTCAAGGTCAG
CAGGGGCAGTCACGCGGCTCCGCCGCGTGTTTTGGTGGCGTTTTTCCATC
CTGGCGGCCGAGAGGCTGGCCTTGACCAATAAGACCCGCACCCTGCACAT
AGTTTTGTGCCGACCGGTCCTGCACATAGGGCGAGTCCGCAGACGGGGAA
AGGAAACCATGTTGAAAACTTTTGTAGCATACAGGAAACCCATTCGCTCA
ACCGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11235:6994..7599+

>mRNA_M-pyrifera_M_contig11235.2583.1 ID=mRNA_M-pyrifera_M_contig11235.2583.1|Name=mRNA_M-pyrifera_M_contig11235.2583.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=768bp|location=Sequence derived from alignment at M-pyrifera_M_contig11235:6994..7599+ (Macrocystis pyrifera P11B4 male)
ATGTACCAGGTATACAAACGCGCGCGGCTTCCGCTGTGTGCAGAACTGGT
CGGCACAAATCTTTGTACAGGGCGTGTGTCGTCAATTTCAACCTTACAGG
TCGGCCCAGACCAACCCGACCCCAGGCCTAACCCCTGCCCTAACCCGAAC
CCCAATCCTGTGGGGGGCTCAAGGTCAGCAGGGGCAGTCACGCGGCTCCG
CCGCGTGTTTTGGTGGCGTTTTTCCATCCTGGCGGCCGAGAGGCTGGCCT
TGACCAATAAGACCCGCACCCTGCACATAGTTTTGTGCCGACCGGTCCTG
CACATAGGGCGAGTCCGCAGACGGGGAAAGGAAACCATGTTGAAAACTTT
TGTAGCATACAGGAAACCCATTCGCTCAACCGCCATGTACCAGGTATACA
AACGCGCGCGGCTTCCGCTGTGTGCAGAACTGGTCGGCACAAATCTTTGT
ACAGGGCGTGTGTCGTCAATTTCAACCTTACAGGTCGGCCCAGACCAACC
CGACCCCAGGCCTAACCCCTGCCCTAACCCGAACCCCAATCCTGTGGGGG
GCTCAAGGTCAGCAGGGGCAGTCACGCGGCTCCGCCGCGTGTTTTGGTGG
CGTTTTTCCATCCTGGCGGCCGAGAGGCTGGCCTTGACCAATAAGACCCG
CACCCTGCACATAGTTTTGTGCCGACCGGTCCTGCACATAGGGCGAGTCC
GCAGACGGGGAAAGGAAACCATGTTGAAAACTTTTGTAGCATACAGGAAA
CCCATTCGCTCAACCGCC
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