mRNA_M-pyrifera_M_contig112317.2582.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112317.2582.1
Unique NamemRNA_M-pyrifera_M_contig112317.2582.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112317.2582.1 vs. uniprot
Match: A0A7S4LKF2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4LKF2_9EUGL)

HSP 1 Score: 88.2 bits (217), Expect = 6.680e-19
Identity = 41/74 (55.41%), Postives = 56/74 (75.68%), Query Frame = 1
Query:   55 ESDLYEVLGVGRDASLRDLKKAYRQAALQYHPDKAPNEAERAAYERVFILVASAYETLSDEELRAEYDKYGKGG 276
            + D Y+VLG+ RDASL D+KKA+R+ +L+YHP+K P    +AA E+VFI VA AYE LSD ++R  YD+YG+ G
Sbjct:    2 KKDYYDVLGINRDASLEDVKKAFRKMSLKYHPEKNPTN--QAAAEKVFIQVAEAYEVLSDSKMRGIYDQYGEDG 73          
BLAST of mRNA_M-pyrifera_M_contig112317.2582.1 vs. uniprot
Match: UPI000529AB4E (dnaJ homolog subfamily B member 6-like n=1 Tax=Colius striatus TaxID=57412 RepID=UPI000529AB4E)

HSP 1 Score: 81.3 bits (199), Expect = 5.940e-18
Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 1
Query:   61 DLYEVLGVGRDASLRDLKKAYRQAALQYHPDKAPNEAERAAYERVFILVASAYETLSDEELRAEYDKYGKGG 276
            D YE LGV R+A+  D+KKAYR+AAL++HPDK P+  E A  E+ F  +A AYE LSD++ R  YD+YGK G
Sbjct:    3 DYYETLGVSRNATAEDIKKAYRKAALKWHPDKNPDNKEYA--EQRFKEIAEAYEVLSDKQKRDVYDRYGKDG 72          
BLAST of mRNA_M-pyrifera_M_contig112317.2582.1 vs. uniprot
Match: A0A6P6KJS8_CARAU (dnaJ homolog subfamily B member 6-like isoform X2 n=3 Tax=Cyprininae TaxID=2743694 RepID=A0A6P6KJS8_CARAU)

HSP 1 Score: 84.3 bits (207), Expect = 5.960e-18
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   61 DLYEVLGVGRDASLRDLKKAYRQAALQYHPDKAPNEAERAAYERVFILVASAYETLSDEELRAEYDKYGKGG 276
            D YE+LGV ++ S  D+KKAYR+ AL++HPDK PN  E+A  E++F  ++ AYE LSDE  R +YDKYGK G
Sbjct:    3 DYYEILGVTKNTSQDDIKKAYRKKALKWHPDKNPNNKEQA--EKMFKEISEAYEVLSDENKRRQYDKYGKEG 72          
BLAST of mRNA_M-pyrifera_M_contig112317.2582.1 vs. uniprot
Match: A0A109UWQ7_9SACH (HBR019Wp n=1 Tax=Eremothecium sinecaudum TaxID=45286 RepID=A0A109UWQ7_9SACH)

HSP 1 Score: 86.7 bits (213), Expect = 6.000e-18
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 1
Query:   61 DLYEVLGVGRDASLRDLKKAYRQAALQYHPDKAPNEAERAAYERVFILVASAYETLSDEELRAEYDKYG 267
            DLYE+LGV RDA+ +++KK+YRQ AL+YHPDK  ++  R A E  F  V++AYE LSDE+ RAEYD++G
Sbjct:    4 DLYEILGVTRDATAQEIKKSYRQLALKYHPDKIADDLLREASEATFKEVSAAYEILSDEQKRAEYDEFG 72          
BLAST of mRNA_M-pyrifera_M_contig112317.2582.1 vs. uniprot
Match: A0A2K5EZT8_AOTNA (DnaJ homolog subfamily B member 6 n=2 Tax=Aotus nancymaae TaxID=37293 RepID=A0A2K5EZT8_AOTNA)

HSP 1 Score: 83.2 bits (204), Expect = 7.570e-18
Identity = 44/72 (61.11%), Postives = 50/72 (69.44%), Query Frame = 1
Query:   61 DLYEVLGVGRDASLRDLKKAYRQAALQYHPDKAPNEAERAAYERVFILVASAYETLSDEELRAEYDKYGKGG 276
            D YEVLGV R AS  D+KKAYR+ AL++HPDK P   E+A  ER F  VA AYE LSD + R  YDKYGK G
Sbjct:    3 DYYEVLGVQRHASPEDIKKAYRKLALKWHPDKNPENTEKA--ERKFKQVAEAYEVLSDAKKRDIYDKYGKEG 72          
BLAST of mRNA_M-pyrifera_M_contig112317.2582.1 vs. uniprot
Match: A0A6I0E445_9BACT (DnaJ domain-containing protein (Fragment) n=1 Tax=Bacteroidales bacterium TaxID=2030927 RepID=A0A6I0E445_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 8.040e-18
Identity = 39/76 (51.32%), Postives = 49/76 (64.47%), Query Frame = 1
Query:   49 TEESDLYEVLGVGRDASLRDLKKAYRQAALQYHPDKAPNEAERAAYERVFILVASAYETLSDEELRAEYDKYGKGG 276
            T + D YE+LGV + AS  ++KKAYRQ A+QYHPDK P + E    E  F   A AYE LSD+  RA YD++G  G
Sbjct:    2 TTKRDFYEILGVSKSASKEEIKKAYRQKAIQYHPDKNPGDKEA---EDKFKEAAEAYEVLSDDNKRARYDQFGHAG 74          
BLAST of mRNA_M-pyrifera_M_contig112317.2582.1 vs. uniprot
Match: A0A8C1G5Z6_CYPCA (DnaJ heat shock protein family (Hsp40) member B6b n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C1G5Z6_CYPCA)

HSP 1 Score: 84.0 bits (206), Expect = 9.270e-18
Identity = 40/72 (55.56%), Postives = 53/72 (73.61%), Query Frame = 1
Query:   61 DLYEVLGVGRDASLRDLKKAYRQAALQYHPDKAPNEAERAAYERVFILVASAYETLSDEELRAEYDKYGKGG 276
            D YE+LGV ++ S  D+KKAYR+ AL++HPDK PN  E+A  E++F  ++ AYE LSDE  R +YDKYGK G
Sbjct:    3 DYYEILGVTKNTSHDDIKKAYRKKALKWHPDKNPNNKEQA--EKMFKEISEAYEVLSDENKRRQYDKYGKEG 72          
BLAST of mRNA_M-pyrifera_M_contig112317.2582.1 vs. uniprot
Match: A0A8C5CJN7_GADMO (DnaJ homolog subfamily C member 10 n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5CJN7_GADMO)

HSP 1 Score: 85.9 bits (211), Expect = 1.410e-17
Identity = 42/92 (45.65%), Postives = 64/92 (69.57%), Query Frame = 1
Query:    1 MLFGCLLGSVEGLPGWTEESDLYEVLGVGRDASLRDLKKAYRQAALQYHPDKAPNEAERAAYERVFILVASAYETLSDEELRAEYDKYGKGG 276
            +L G LL SV     W E  D Y +LGVGR+A++R++++A+++ AL  HPDK PN+  ++A++  F+ +  AYE L DE+LR +YDKYG+ G
Sbjct:   22 LLVGWLLASV-----WAEAQDYYNLLGVGREATVREIRQAFKKLALTMHPDKKPND--KSAHD-AFLKINRAYEVLKDEDLRKKYDKYGEKG 105          
BLAST of mRNA_M-pyrifera_M_contig112317.2582.1 vs. uniprot
Match: A0A8C5FGE4_GADMO (DnaJ homolog subfamily C member 10 n=1 Tax=Gadus morhua TaxID=8049 RepID=A0A8C5FGE4_GADMO)

HSP 1 Score: 85.9 bits (211), Expect = 1.420e-17
Identity = 42/92 (45.65%), Postives = 64/92 (69.57%), Query Frame = 1
Query:    1 MLFGCLLGSVEGLPGWTEESDLYEVLGVGRDASLRDLKKAYRQAALQYHPDKAPNEAERAAYERVFILVASAYETLSDEELRAEYDKYGKGG 276
            +L G LL SV     W E  D Y +LGVGR+A++R++++A+++ AL  HPDK PN+  ++A++  F+ +  AYE L DE+LR +YDKYG+ G
Sbjct:   22 LLVGWLLASV-----WAEAQDYYNLLGVGREATVREIRQAFKKLALTMHPDKKPND--KSAHD-AFLKINRAYEVLKDEDLRKKYDKYGEKG 105          
BLAST of mRNA_M-pyrifera_M_contig112317.2582.1 vs. uniprot
Match: A0A8C4YUE3_GADMO (DnaJ homolog subfamily C member 10 n=10 Tax=Gadus morhua TaxID=8049 RepID=A0A8C4YUE3_GADMO)

HSP 1 Score: 85.9 bits (211), Expect = 1.430e-17
Identity = 42/92 (45.65%), Postives = 64/92 (69.57%), Query Frame = 1
Query:    1 MLFGCLLGSVEGLPGWTEESDLYEVLGVGRDASLRDLKKAYRQAALQYHPDKAPNEAERAAYERVFILVASAYETLSDEELRAEYDKYGKGG 276
            +L G LL SV     W E  D Y +LGVGR+A++R++++A+++ AL  HPDK PN+  ++A++  F+ +  AYE L DE+LR +YDKYG+ G
Sbjct:   15 LLVGWLLASV-----WAEAQDYYNLLGVGREATVREIRQAFKKLALTMHPDKKPND--KSAHD-AFLKINRAYEVLKDEDLRKKYDKYGEKG 98          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112317.2582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4LKF2_9EUGL6.680e-1955.41Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
UPI000529AB4E5.940e-1855.56dnaJ homolog subfamily B member 6-like n=1 Tax=Col... [more]
A0A6P6KJS8_CARAU5.960e-1855.56dnaJ homolog subfamily B member 6-like isoform X2 ... [more]
A0A109UWQ7_9SACH6.000e-1857.97HBR019Wp n=1 Tax=Eremothecium sinecaudum TaxID=452... [more]
A0A2K5EZT8_AOTNA7.570e-1861.11DnaJ homolog subfamily B member 6 n=2 Tax=Aotus na... [more]
A0A6I0E445_9BACT8.040e-1851.32DnaJ domain-containing protein (Fragment) n=1 Tax=... [more]
A0A8C1G5Z6_CYPCA9.270e-1855.56DnaJ heat shock protein family (Hsp40) member B6b ... [more]
A0A8C5CJN7_GADMO1.410e-1745.65DnaJ homolog subfamily C member 10 n=1 Tax=Gadus m... [more]
A0A8C5FGE4_GADMO1.420e-1745.65DnaJ homolog subfamily C member 10 n=1 Tax=Gadus m... [more]
A0A8C4YUE3_GADMO1.430e-1745.65DnaJ homolog subfamily C member 10 n=10 Tax=Gadus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112317contigM-pyrifera_M_contig112317:237..512 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score82.8
Seed ortholog evalue9.2e-14
Seed eggNOG ortholog33169.AAS54573
Preferred nameXDJ1
KEGG koko:K09503
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0001671,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006457,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006996,GO:0007005,GO:0008047,GO:0008104,GO:0008150,GO:0009987,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0017038,GO:0019867,GO:0030150,GO:0030234,GO:0030544,GO:0031072,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0032592,GO:0032781,GO:0033036,GO:0033365,GO:0034613,GO:0042886,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043462,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045184,GO:0046907,GO:0050790,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0055085,GO:0060589,GO:0060590,GO:0065002,GO:0065007,GO:0065009,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0098573,GO:0098588,GO:0098772,GO:0098805,GO:1990542
EggNOG free text desc.to Saccharomyces cerevisiae XDJ1 (YLR090W)
EggNOG OGs38CPQ@33154,3NXND@4751,3QMVP@4890,3RS62@4891,3RZQP@4893,COG0484@1,KOG0712@2759
COG Functional cat.O
Best tax levelSaccharomycetaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko03110
Exons1
Model size276
Cds size276
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815637.2429798-CDS-M-pyrifera_M_contig112317:236..5121622815637.2429798-CDS-M-pyrifera_M_contig112317:236..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112317 237..512 -
1692277498.993074-CDS-M-pyrifera_M_contig112317:236..5121692277498.993074-CDS-M-pyrifera_M_contig112317:236..512Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112317 237..512 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112317.2582.1prot_M-pyrifera_M_contig112317.2582.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112317 237..512 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112317.2582.1

>prot_M-pyrifera_M_contig112317.2582.1 ID=prot_M-pyrifera_M_contig112317.2582.1|Name=mRNA_M-pyrifera_M_contig112317.2582.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=92bp
MLFGCLLGSVEGLPGWTEESDLYEVLGVGRDASLRDLKKAYRQAALQYHP
DKAPNEAERAAYERVFILVASAYETLSDEELRAEYDKYGKGG
back to top

mRNA from alignment at M-pyrifera_M_contig112317:237..512-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112317.2582.1 ID=mRNA_M-pyrifera_M_contig112317.2582.1|Name=mRNA_M-pyrifera_M_contig112317.2582.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig112317:237..512- (Macrocystis pyrifera P11B4 male)
ATGCTCTTTGGTTGTTTGTTGGGGAGTGTGGAGGGTTTGCCGGGTTGGAC GGAGGAAAGTGATTTGTATGAGGTGCTTGGTGTGGGTCGAGATGCATCAC TACGTGATTTGAAGAAGGCATATCGGCAAGCCGCTCTGCAATATCATCCA GACAAGGCTCCGAATGAGGCGGAACGTGCTGCGTATGAGAGGGTGTTTAT TTTGGTGGCTAGTGCGTATGAGACGTTGTCGGATGAGGAGTTGCGGGCGG AGTATGACAAGTATGGCAAGGGTGGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig112317:237..512-

>mRNA_M-pyrifera_M_contig112317.2582.1 ID=mRNA_M-pyrifera_M_contig112317.2582.1|Name=mRNA_M-pyrifera_M_contig112317.2582.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=552bp|location=Sequence derived from alignment at M-pyrifera_M_contig112317:237..512- (Macrocystis pyrifera P11B4 male)
ATGCTCTTTGGTTGTTTGTTGGGGAGTGTGGAGGGTTTGCCGGGTTGGAC
GGAGGAAAGTGATTTGTATGAGGTGCTTGGTGTGGGTCGAGATGCATCAC
TACGTGATTTGAAGAAGGCATATCGGCAAGCCGCTCTGCAATATCATCCA
GACAAGGCTCCGAATGAGGCGGAACGTGCTGCGTATGAGAGGGTGTTTAT
TTTGGTGGCTAGTGCGTATGAGACGTTGTCGGATGAGGAGTTGCGGGCGG
AGTATGACAAGTATGGCAAGGGTGGGATGCTCTTTGGTTGTTTGTTGGGG
AGTGTGGAGGGTTTGCCGGGTTGGACGGAGGAAAGTGATTTGTATGAGGT
GCTTGGTGTGGGTCGAGATGCATCACTACGTGATTTGAAGAAGGCATATC
GGCAAGCCGCTCTGCAATATCATCCAGACAAGGCTCCGAATGAGGCGGAA
CGTGCTGCGTATGAGAGGGTGTTTATTTTGGTGGCTAGTGCGTATGAGAC
GTTGTCGGATGAGGAGTTGCGGGCGGAGTATGACAAGTATGGCAAGGGTG
GG
back to top