mRNA_M-pyrifera_M_contig11230.2578.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11230.2578.1
Unique NamemRNA_M-pyrifera_M_contig11230.2578.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11230.2578.1 vs. uniprot
Match: D7FM91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM91_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 7.850e-31
Identity = 159/385 (41.30%), Postives = 185/385 (48.05%), Query Frame = 1 
Query:    4 EPLERVAQRSVTHEVEMDENEIVVHQRRCSTAVGVTPSHPSAIVDLFHEMESIGKTLLSRSDSDDGEDDDDSGRPGDIKVSTVHTNYPRGGPAPSHGPPPTAQQQRQQRQPLPHSGPAVKLWGSDKPTAPNDTSAATTELTTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRRSEAPSPKFTTMFAPSAEADAWEKEQPKPYWPTD--AKSTAAXXXXXXXXXXXXXXXADVVGKAGVDGAWNRR--KRGWGEAGGEEGEGGLDHDESTP-----------VFIGVVAGPSVRPCLENDRRPLPPALNRLSSVSGSGMSLAPLRRKTSMGSFQKGMGESLKGRMRKQMDIPVEPKSEIDLNIPIDQITSLKYLAQV 1113
            +P + + QRS  HEVEMDEN++V+H RR STAVGVTPS PSAIVDLF E+ESIG T L                                                                       P++T +        XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A   S    P + +   P A         P+PYWPTD  A   A+                +  GK+G    W+RR  K G     GE+   G  H + T                V   P VRP L   R     + + L + S S  + APLRRKTSMGSFQKGMGESL GR+RKQ+DIP  PK EID NIP+ QI SLKYLAQV
Sbjct:   44 DPSKHLRQRSKMHEVEMDENKVVMHTRRGSTAVGVTPSDPSAIVDLFQEVESIGSTYLP----------------------------------------------------------------------PDETDSE--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNADSASSMVEPAWGSGGDPQA---------PRPYWPTDEEAAGVASGEGGAVVMLGGKEGGVEANGKSGEP-RWSRRSIKIGSSVGCGEQRLHGNSHRQKTQSQQPGHHXXXXXXXXVPEPPPVRPGLPPPRG----SSSALQATSVSESTQAPLRRKTSMGSFQKGMGESLTGRLRKQLDIPDAPKREIDTNIPVKQIQSLKYLAQV 342
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BLAST of mRNA_M-pyrifera_M_contig11230.2578.1 vs. uniprot
Match: A0A6H5JJI7_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJI7_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.680e-23
Identity = 138/393 (35.11%), Postives = 165/393 (41.98%), Query Frame = 1 
Query:    4 EPLERVAQRSVTHEVEMDENEIVVHQRRCSTAVGVTPSHPSAIVDLFHEMESIGKTLLSRSDSDDGEDDDDSGRPGDIKVSTVHTNYPRGGPAPSHGPPPTAQQQRQQRQPLPHSGPAVKLWGSDKPTAPNDTSAATTELTTPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASRRSEAPSPKFTTMFAPSAEADAWEKEQPKPYW-PTDAKSTAAXXXXXXXXXXXXXXXADVVGKAGVDGAWNRRKRGWGEAGGEE----GEGGL-------------------DHDESTPVFIGVVAGPSVRPCLENDRRPLPPALNRLSSVSGSGMSLAPLRRKTSMGSFQKGMGESLKGRMRKQMDIPVEPKSEIDLNIPIDQITSLKYLAQ 1110
            +P + V QRS  HEVEMDEN++V+H RR STAVGVTPS PSAIVDLF E+ESIG T L   ++D                                                                               XXXXXXX                 XXXXXXXXXXX    S++P+      +    +  A     PKPYW PTD ++                    VV   G +G     ++    AG E     G GG+                    H +      GV   P VRP L   R     + + L + S S  + APLRRKTSMGSFQKGMGESL GR+RKQ+DIP  PK EID NIP+ QI SLKYLAQ
Sbjct:   44 DPSKHVRQRSKMHEVEMDENKVVMHTRRGSTAVGVTPSDPSAIVDLFQEVESIGSTYLPPDETDSEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQKHRVGVAGKLWAQQEXXXXXXXXXXXXXXXSDSPAQMVEPAWGSGGDPQA-----PKPYWRPTDEEAAGVASGEGGA----------VVALGGTEGGGEANRKSGEPAGAEARLKLGLGGMRRAEAAWKLTSSETQSQQPGHHQEQAAAAGVPELP-VRPGLPPPRG----SSSALQATSVSESAQAPLRRKTSMGSFQKGMGESLTGRLRKQLDIPDAPKREIDTNIPVKQIQSLKYLAQ 399
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11230.2578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM91_ECTSI7.850e-3141.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJI7_9PHAE1.680e-2335.11Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11230contigM-pyrifera_M_contig11230:3523..6090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1113
Cds size1113
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11230.2578.1prot_M-pyrifera_M_contig11230.2578.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11230 3523..6090 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.9680645-CDS-M-pyrifera_M_contig11230:3522..37501622815636.9680645-CDS-M-pyrifera_M_contig11230:3522..3750Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11230 3523..3750 -
1692277498.8782196-CDS-M-pyrifera_M_contig11230:3522..37501692277498.8782196-CDS-M-pyrifera_M_contig11230:3522..3750Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11230 3523..3750 -
1622815636.978302-CDS-M-pyrifera_M_contig11230:4130..42681622815636.978302-CDS-M-pyrifera_M_contig11230:4130..4268Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11230 4131..4268 -
1692277498.8969073-CDS-M-pyrifera_M_contig11230:4130..42681692277498.8969073-CDS-M-pyrifera_M_contig11230:4130..4268Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11230 4131..4268 -
1622815636.9942982-CDS-M-pyrifera_M_contig11230:4393..48311622815636.9942982-CDS-M-pyrifera_M_contig11230:4393..4831Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11230 4394..4831 -
1692277498.9100063-CDS-M-pyrifera_M_contig11230:4393..48311692277498.9100063-CDS-M-pyrifera_M_contig11230:4393..4831Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11230 4394..4831 -
1622815637.010953-CDS-M-pyrifera_M_contig11230:4966..50901622815637.010953-CDS-M-pyrifera_M_contig11230:4966..5090Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11230 4967..5090 -
1692277498.9248586-CDS-M-pyrifera_M_contig11230:4966..50901692277498.9248586-CDS-M-pyrifera_M_contig11230:4966..5090Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11230 4967..5090 -
1622815637.0253966-CDS-M-pyrifera_M_contig11230:5905..60901622815637.0253966-CDS-M-pyrifera_M_contig11230:5905..6090Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11230 5906..6090 -
1692277498.9354327-CDS-M-pyrifera_M_contig11230:5905..60901692277498.9354327-CDS-M-pyrifera_M_contig11230:5905..6090Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11230 5906..6090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11230.2578.1

>prot_M-pyrifera_M_contig11230.2578.1 ID=prot_M-pyrifera_M_contig11230.2578.1|Name=mRNA_M-pyrifera_M_contig11230.2578.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=371bp
MEPLERVAQRSVTHEVEMDENEIVVHQRRCSTAVGVTPSHPSAIVDLFHE
MESIGKTLLSRSDSDDGEDDDDSGRPGDIKVSTVHTNYPRGGPAPSHGPP
PTAQQQRQQRQPLPHSGPAVKLWGSDKPTAPNDTSAATTELTTPTTTGAG
AVTSAGQGGVASSTPQEQEQAAAAASAATASRRSEAPSPKFTTMFAPSAE
ADAWEKEQPKPYWPTDAKSTAAAAAAAAVEAAAATAAADVVGKAGVDGAW
NRRKRGWGEAGGEEGEGGLDHDESTPVFIGVVAGPSVRPCLENDRRPLPP
ALNRLSSVSGSGMSLAPLRRKTSMGSFQKGMGESLKGRMRKQMDIPVEPK
SEIDLNIPIDQITSLKYLAQV
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mRNA from alignment at M-pyrifera_M_contig11230:3523..6090-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11230.2578.1 ID=mRNA_M-pyrifera_M_contig11230.2578.1|Name=mRNA_M-pyrifera_M_contig11230.2578.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2568bp|location=Sequence derived from alignment at M-pyrifera_M_contig11230:3523..6090- (Macrocystis pyrifera P11B4 male)
ATGGAACCGCTCGAACGTGTTGCGCAGAGGAGCGTAACACACGAGGTGGA
GATGGACGAAAATGAGATTGTGGTGCACCAGCGCCGCTGTAGTACCGCCG
TGGGCGTGACCCCCAGCCACCCGTCGGCGATCGTGGACCTCTTCCACGAG
ATGGAGTCTATCGGTAAGACGCTGCTGTCCCGTTCGTGGAAGAGTTTTGC
TGTTACGGGGGGGTCCATAGTTAACAGGACCTATGGTGTAAATAAAAACC
TATATATTTACCTATTTTTAGTAACAAAATTTGGTCCCGTTAACTATGGA
CCCCCGTAATAGTAGGCGTATTATTTATAGTGGAATAGTGCAAAACGTTA
CGTGTACGATTGTACTGACACTTTTTTGTTGTTGTGTTTTGCCCATCCCA
TGATTTATCATACCTTCGCCCTTCTTTTCTGTCTCCTTCCTGCTTTTAGA
ACTGCAGTTCCGTGTTGAAGACAATCCAGTCTAAAACCAAGTAGTGTGTC
CCCCAAACGGGACTGTGGTACTATTGATGACAGGATAGATGTATTATCAA
ATAGTAGTCGTAACTTTTAACAATACTGGGGGTCACACAGTAGAACTTTA
GCAAGCTGCGTGTGATCTACCTAACCCTCACAGTATTAATAGTGACGAAT
ACAGCAGTAGTGGTCTGTCCCCTTGACGATGCCGCTAGAGTAGCGCTGGT
TGCACGCTGTATAGTGCTTGCGGAATATTTTCCACCAATGGGATTCACGA
TTTGCGGTACATGTGCGCAATAGTCCGGGTTTCCGCTATATATAGTGGCA
GTGTTAGTGACTTGGCGCATATAAACCGGCACTACGTATAGAGGGACCGC
TACTGCTGCTGCTGCACTTTTCGAAGCGCGCGTACATACCTTTGTCTGGT
GATCCTGATTCCCCCCCCCCCCCCACCCCCCATCCCTCCCTCACTATGCC
ACCGACCCACGCTATCGCCGTCCAGCGAGCGGCTACGCAGCAGGGGGCAG
CGACTCGGACGATGGCGAAGACGACGATGATAGCGGGCGACCCGGCGACA
TTAAGGTATCGACGGTACATACCAATTACCCCCGAGGCGGCCCGGCGCCG
AGCCACGGCCCGCCGCCGACCGCCGTGGGCCCTGCCGACGCCGCCGCTGT
CCTCACCGCCCAGTCGCTCGAATCGGTGGCCATGTCATCGTCCGTGTCGA
CCGCGTACGCAAGCGCTAGCGCTTCCGGCGGGGAAGTATCGAAGATGGTA
CAGCAGCAGCAGCAGCAGCGGCAGCAGCGGCAGCCGCTCCCACACTCGGG
TCCCGCAGTAAAGCTCTGGGGAAGCGATAAGCCGACGGCACCGAACGATA
CGTCGGCGGCGACGACGGAGCTGACGACACCGACAACTACGGGCGCTGGA
GCGGTGACGAGCGCGGGACAGGGAGGGGTAGCGTCGTCGACCCCGCAGGA
ACAGGAACAGGCGGCGGCGGCGGCGTCTGCTGCTACCGCTTCGCGGCGCA
GTGAGGCGCCCAGCCCCAAGTTTACGACGATGTTCGCGCCGAGCGCTGAG
GCGGATGCGTGGGAGAAGGAGCAGCCCAAGCCGTATTGGCCGACGGACGC
CAAGAGCACTGCTGCTGCGGCGGCGGCGGCGGCTGTGGAAGCGGCGGCGG
CTACCGCGGCCGCTGATGTGGTGGGGAAGGCGGGGGTGGATGGGGCTGTG
ATTGTGCTGCCGGATGAGACCCCGAATGAGGTGAGGGAGGAGCTGGGTGG
GGAGGGGAGGGAGTGGGTAGGAGGGGAGGGATGTATACAGACCTTAGCCC
AGCTTTTTCAGGGTTGGAATAGTGGAATAGAAGGAAAAGAGGGTGGGGGG
AGGCAGGAGGGGAAGAAGGGGAGGGGGGTTTAGACCACGATGAAAGCACC
CCAGTTTTTATTGGGGTGGTGGCGGGCCCGTCTGTTCGGCCTTGCTTGGA
AAACGACCGCGTCATGATGGCTTCTCGTTTGTCTACACGGTGTTGGTGTG
GAGTGTAGCATTTCTCCGACACCAAGCATGTGTGTGCCGCCCCCGACGGT
AAAGAGCGGGGTCGGTTTCGATGCGCTCGCAGCTACTATGACCGACCCGA
CCTCCTTTGTCTTAACCTTTTTCCCTTCGCCGCCGTCGTTTGCACTCCCC
CCCCCCCCGCGCCCGCTCTTGTTTTGCGTTCGGCTGACACTTGTACCGCC
TCCTCTCTCGACCCAACAACCGTCACCTACGACAACAATAACGACCACGA
AAAAAAAAAATGAAACAGCCGACACGAACGACCTCGAACGTCCAGGACTC
GGAGGACGTAAGGAGACCGGGCTTGGGGGTGCGGCAACAGCGCCCGCTGC
CGCCGGCGCTCAACCGCCTCAGCTCCGTCAGCGGCAGCGGGATGTCGCTG
GCGCCCCTGAGACGCAAGACCAGCATGGGCTCCTTCCAGAAGGGGATGGG
GGAGAGCCTCAAGGGCCGAATGCGCAAGCAGATGGACATTCCCGTGGAGC
CGAAGTCGGAGATCGACCTGAACATTCCGATCGACCAAATCACGAGCTTG
AAGTACCTTGCGCAGGTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11230:3523..6090-

>mRNA_M-pyrifera_M_contig11230.2578.1 ID=mRNA_M-pyrifera_M_contig11230.2578.1|Name=mRNA_M-pyrifera_M_contig11230.2578.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2226bp|location=Sequence derived from alignment at M-pyrifera_M_contig11230:3523..6090- (Macrocystis pyrifera P11B4 male)
ATGGAACCGCTCGAACGTGTTGCGCAGAGGAGCGTAACACACGAGGTGGA
GATGGACGAAAATGAGATTGTGGTGCACCAGCGCCGCTGTAGTACCGCCG
TGGGCGTGACCCCCAGCCACCCGTCGGCGATCGTGGACCTCTTCCACGAG
ATGGAGTCTATCGGTAAGACGCTGCTGTCCCGTTCATGGAACCGCTCGAA
CGTGTTGCGCAGAGGAGCGTAACACACGAGGTGGAGATGGACGAAAATGA
GATTGTGGTGCACCAGCGCCGCTGTAGTACCGCCGTGGGCGTGACCCCCA
GCCACCCGTCGGCGATCGTGGACCTCTTCCACGAGATGGAGTCTATCGGT
AAGACGCTGCTGTCCCGTTCCGACTCGGACGATGGCGAAGACGACGATGA
TAGCGGGCGACCCGGCGACATTAAGGTATCGACGGTACATACCAATTACC
CCCGAGGCGGCCCGGCGCCGAGCCACGGCCCGCCGCCGACCGCCCGACTC
GGACGATGGCGAAGACGACGATGATAGCGGGCGACCCGGCGACATTAAGG
TATCGACGGTACATACCAATTACCCCCGAGGCGGCCCGGCGCCGAGCCAC
GGCCCGCCGCCGACCGCCCAGCAGCAGCGGCAGCAGCGGCAGCCGCTCCC
ACACTCGGGTCCCGCAGTAAAGCTCTGGGGAAGCGATAAGCCGACGGCAC
CGAACGATACGTCGGCGGCGACGACGGAGCTGACGACACCGACAACTACG
GGCGCTGGAGCGGTGACGAGCGCGGGACAGGGAGGGGTAGCGTCGTCGAC
CCCGCAGGAACAGGAACAGGCGGCGGCGGCGGCGTCTGCTGCTACCGCTT
CGCGGCGCAGTGAGGCGCCCAGCCCCAAGTTTACGACGATGTTCGCGCCG
AGCGCTGAGGCGGATGCGTGGGAGAAGGAGCAGCCCAAGCCGTATTGGCC
GACGGACGCCAAGAGCACTGCTGCTGCGGCGGCGGCGGCGGCTGTGGAAG
CGGCGGCGGCTACCGCGGCCGCTGATGTGGTGGGGAAGGCGGGGGTGGAT
GGGGCTCAGCAGCAGCGGCAGCAGCGGCAGCCGCTCCCACACTCGGGTCC
CGCAGTAAAGCTCTGGGGAAGCGATAAGCCGACGGCACCGAACGATACGT
CGGCGGCGACGACGGAGCTGACGACACCGACAACTACGGGCGCTGGAGCG
GTGACGAGCGCGGGACAGGGAGGGGTAGCGTCGTCGACCCCGCAGGAACA
GGAACAGGCGGCGGCGGCGGCGTCTGCTGCTACCGCTTCGCGGCGCAGTG
AGGCGCCCAGCCCCAAGTTTACGACGATGTTCGCGCCGAGCGCTGAGGCG
GATGCGTGGGAGAAGGAGCAGCCCAAGCCGTATTGGCCGACGGACGCCAA
GAGCACTGCTGCTGCGGCGGCGGCGGCGGCTGTGGAAGCGGCGGCGGCTA
CCGCGGCCGCTGATGTGGTGGGGAAGGCGGGGGTGGATGGGGCTTGGAAT
AGAAGGAAAAGAGGGTGGGGGGAGGCAGGAGGGGAAGAAGGGGAGGGGGG
TTTAGACCACGATGAAAGCACCCCAGTTTTTATTGGGGTGGTGGCGGGCC
CGTCTGTTCGGCCTTGCTTGGAAAACGACCGCTGGAATAGAAGGAAAAGA
GGGTGGGGGGAGGCAGGAGGGGAAGAAGGGGAGGGGGGTTTAGACCACGA
TGAAAGCACCCCAGTTTTTATTGGGGTGGTGGCGGGCCCGTCTGTTCGGC
CTTGCTTGGAAAACGACCGCCGCCCGCTGCCGCCGGCGCTCAACCGCCTC
AGCTCCGTCAGCGGCAGCGGGATGTCGCTGGCGCCCCTGAGACGCAAGAC
CAGCATGGGCTCCTTCCAGAAGGGGATGGGGGAGAGCCTCAAGGGCCGAA
TGCGCAAGCAGATGGACATTCCCGTGGAGCCGAAGTCGGAGATCGACCTG
AACATTCCGATCGACCAAATCACGAGCTTGAAGTACCTTGCGCAGGTGCG
CCCGCTGCCGCCGGCGCTCAACCGCCTCAGCTCCGTCAGCGGCAGCGGGA
TGTCGCTGGCGCCCCTGAGACGCAAGACCAGCATGGGCTCCTTCCAGAAG
GGGATGGGGGAGAGCCTCAAGGGCCGAATGCGCAAGCAGATGGACATTCC
CGTGGAGCCGAAGTCGGAGATCGACCTGAACATTCCGATCGACCAAATCA
CGAGCTTGAAGTACCTTGCGCAGGTG
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