mRNA_M-pyrifera_M_contig112295.2575.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112295.2575.1
Unique NamemRNA_M-pyrifera_M_contig112295.2575.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig112295.2575.1 vs. uniprot
Match: A0A2E7KDA4_9PLAN (SMI1_KNR4 domain-containing protein n=5 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KDA4_9PLAN)

HSP 1 Score: 249 bits (636), Expect = 2.960e-78
Identity = 122/123 (99.19%), Postives = 122/123 (99.19%), Query Frame = 1 
Query:    1 LEYQNEKVRYDATLGLRDIRAWEAIETVIAVLEHETDSLVRGSILQMLGELDSVASRETLLAWMVKGDEVERMHAYEGLNKLGDERAKPLFQQLKQEKEHATQNDNTPDESVFQNRHWWWPWK 369
            LEYQNEKVRYDATLGLRDIRAWEAIETVIAVLEHETDSLVRGSILQMLGELDSVASRETLLAWMVKGDEVERMHAYEGLNKLGDERA PLFQQLKQEKEHATQNDNTPDESVFQNRHWWWPWK
Sbjct:  430 LEYQNEKVRYDATLGLRDIRAWEAIETVIAVLEHETDSLVRGSILQMLGELDSVASRETLLAWMVKGDEVERMHAYEGLNKLGDERAMPLFQQLKQEKEHATQNDNTPDESVFQNRHWWWPWK 552
[Close]
BLAST of mRNA_M-pyrifera_M_contig112295.2575.1 vs. uniprot
Match: A0A517W523_9PLAN (Putative lyase n=2 Tax=Gimesia chilikensis TaxID=2605989 RepID=A0A517W523_9PLAN)

HSP 1 Score: 106 bits (265), Expect = 2.110e-24
Identity = 58/97 (59.79%), Postives = 72/97 (74.23%), Query Frame = 1 
Query:    1 LEYQNEKVRYDATLGLRDIRAWEAIETVIAVLEHETDSLVRGSILQMLGELDSVASRETLLAWMVKGDEVERMHAYEGLNKLGDERAKPLFQQLKQE 291
            LE++N+ +R+ ATLGLR I+A EAI  VI +LE + D LVRGSIL MLGELDS  SRETLL W  KGD+  R+ A +GL KLGDER  P+ +Q+ QE
Sbjct:  430 LEHRNDTIRFYATLGLRKIKALEAIPIVIPLLETDVDPLVRGSILHMLGELDSRQSRETLLNWTEKGDDDARLDAVDGLCKLGDERVIPVARQMLQE 526
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112295.2575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E7KDA4_9PLAN2.960e-7899.19SMI1_KNR4 domain-containing protein n=5 Tax=Gimesi... [more]
A0A517W523_9PLAN2.110e-2459.79Putative lyase n=2 Tax=Gimesia chilikensis TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112295contigM-pyrifera_M_contig112295:213..584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size372
Cds size372
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.7548044-CDS-M-pyrifera_M_contig112295:212..5841622815636.7548044-CDS-M-pyrifera_M_contig112295:212..584Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112295 213..584 -
1692277498.7668738-CDS-M-pyrifera_M_contig112295:212..5841692277498.7668738-CDS-M-pyrifera_M_contig112295:212..584Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112295 213..584 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112295.2575.1prot_M-pyrifera_M_contig112295.2575.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112295 213..584 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112295.2575.1

>prot_M-pyrifera_M_contig112295.2575.1 ID=prot_M-pyrifera_M_contig112295.2575.1|Name=mRNA_M-pyrifera_M_contig112295.2575.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=124bp
LEYQNEKVRYDATLGLRDIRAWEAIETVIAVLEHETDSLVRGSILQMLGE
LDSVASRETLLAWMVKGDEVERMHAYEGLNKLGDERAKPLFQQLKQEKEH
ATQNDNTPDESVFQNRHWWWPWK*
back to top

mRNA from alignment at M-pyrifera_M_contig112295:213..584-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112295.2575.1 ID=mRNA_M-pyrifera_M_contig112295.2575.1|Name=mRNA_M-pyrifera_M_contig112295.2575.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig112295:213..584- (Macrocystis pyrifera P11B4 male)
CTGGAATATCAGAATGAAAAAGTCCGTTATGATGCGACGCTGGGGTTGCG
AGACATTCGTGCCTGGGAAGCGATTGAAACAGTGATCGCCGTGTTGGAAC
ACGAGACGGACAGTCTGGTGCGGGGAAGTATCCTGCAGATGCTGGGTGAA
CTGGATAGTGTTGCTTCGCGGGAAACACTGCTTGCCTGGATGGTCAAGGG
AGACGAGGTGGAACGAATGCATGCCTACGAAGGGCTGAATAAACTGGGAG
ATGAGCGGGCAAAGCCCCTGTTCCAACAGTTAAAGCAGGAAAAAGAACAT
GCCACTCAGAATGATAACACCCCAGATGAAAGCGTGTTTCAAAACCGGCA
CTGGTGGTGGCCCTGGAAGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig112295:213..584-

>mRNA_M-pyrifera_M_contig112295.2575.1 ID=mRNA_M-pyrifera_M_contig112295.2575.1|Name=mRNA_M-pyrifera_M_contig112295.2575.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=744bp|location=Sequence derived from alignment at M-pyrifera_M_contig112295:213..584- (Macrocystis pyrifera P11B4 male)
CTGGAATATCAGAATGAAAAAGTCCGTTATGATGCGACGCTGGGGTTGCG
AGACATTCGTGCCTGGGAAGCGATTGAAACAGTGATCGCCGTGTTGGAAC
ACGAGACGGACAGTCTGGTGCGGGGAAGTATCCTGCAGATGCTGGGTGAA
CTGGATAGTGTTGCTTCGCGGGAAACACTGCTTGCCTGGATGGTCAAGGG
AGACGAGGTGGAACGAATGCATGCCTACGAAGGGCTGAATAAACTGGGAG
ATGAGCGGGCAAAGCCCCTGTTCCAACAGTTAAAGCAGGAAAAAGAACAT
GCCACTCAGAATGATAACACCCCAGATGAAAGCGTGTTTCAAAACCGGCA
CTGGTGGTGGCCCTGGAAGTAGCTGGAATATCAGAATGAAAAAGTCCGTT
ATGATGCGACGCTGGGGTTGCGAGACATTCGTGCCTGGGAAGCGATTGAA
ACAGTGATCGCCGTGTTGGAACACGAGACGGACAGTCTGGTGCGGGGAAG
TATCCTGCAGATGCTGGGTGAACTGGATAGTGTTGCTTCGCGGGAAACAC
TGCTTGCCTGGATGGTCAAGGGAGACGAGGTGGAACGAATGCATGCCTAC
GAAGGGCTGAATAAACTGGGAGATGAGCGGGCAAAGCCCCTGTTCCAACA
GTTAAAGCAGGAAAAAGAACATGCCACTCAGAATGATAACACCCCAGATG
AAAGCGTGTTTCAAAACCGGCACTGGTGGTGGCCCTGGAAGTAG
back to top