mRNA_M-pyrifera_M_contig112275.2570.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig112275.2570.1 vs. uniprot
Match: A0A7X5WV16_9ACTN (ABC transporter permease subunit n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WV16_9ACTN) HSP 1 Score: 285 bits (728), Expect = 1.890e-89 Identity = 146/195 (74.87%), Postives = 161/195 (82.56%), Query Frame = 1
Query: 1 PQISGAIWAGALLVFLYTISDWGAVNLLRYDTLTRDIYADRLFDQPRAMGLSLVLAVVALTVVAAERSLDRRRQRLEVVQTRDALTVPLGRWKWPAVATVVLVLGNALAGPVGVFAFWAWRGLRVDSPAIGLGTDVGALVDPAIHTAQAGLITAAVAIAVVLPVAWLTARYRSRVGGTANSMVVAGFALPGVVIA 585
PQIS A+WAG LLVFLYTISD+GAV LL YDTLT IYAD+LFDQPRAMGL+LVL VAL VV ER+LDRRRQR+ VV+TR L VPLGRW WP +A V L +GNAL GPV V AFWAWRGL D ++GL TD+G LV P IH+AQAGL+TAAVA+AVVLPVAWLTARYRSRVGG NSMVVAGFALPGVV A
Sbjct: 83 PQISSAVWAGTLLVFLYTISDFGAVALLGYDTLTEQIYADKLFDQPRAMGLALVLGGVALVVVMLERTLDRRRQRIAVVRTRGPLIVPLGRWTWPTLAVVALFVGNALVGPVAVLAFWAWRGLTADVESLGLATDLGDLVWPTIHSAQAGLVTAAVAVAVVLPVAWLTARYRSRVGGAVNSMVVAGFALPGVVTA 277
BLAST of mRNA_M-pyrifera_M_contig112275.2570.1 vs. uniprot
Match: A0A6B1B235_9ACTN (Iron ABC transporter permease n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B235_9ACTN) HSP 1 Score: 252 bits (643), Expect = 3.880e-78 Identity = 128/195 (65.64%), Postives = 152/195 (77.95%), Query Frame = 1
Query: 1 PQISGAIWAGALLVFLYTISDWGAVNLLRYDTLTRDIYADRLFDQPRAMGLSLVLAVVALTVVAAERSLDRRRQRLEVVQTRDALTVPLGRWKWPAVATVVLVLGNALAGPVGVFAFWAWRGLRVDSPAIGLGTDVGALVDPAIHTAQAGLITAAVAIAVVLPVAWLTARYRSRVGGTANSMVVAGFALPGVVIA 585
PQ+ A+ AG +LVFLYTISD+GAV+LL Y TL IYAD+LFDQ R+MGL+L+L V AL VV ER+L+RRR R+EV +++D L VPL W P + V +GNAL GPV V FWAWRGL D ++GLG D+GALV+PA+HTA+ GLITA VAIAVVLP+AWLT RYRSRV G ANSMVVAGFALPGVVIA
Sbjct: 203 PQVWSAVLAGTMLVFLYTISDFGAVSLLGYSTLAEQIYADQLFDQARSMGLALILGVTALGVVMIERALERRRARVEVTRSQDPLIVPLKGWSIPVLIAVAAFIGNALIGPVAVLGFWAWRGLTADIDSVGLGVDIGALVEPALHTAEVGLITALVAIAVVLPIAWLTGRYRSRVAGAANSMVVAGFALPGVVIA 397
BLAST of mRNA_M-pyrifera_M_contig112275.2570.1 vs. uniprot
Match: A0A520XVP4_9ACTN (Iron ABC transporter permease n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XVP4_9ACTN) HSP 1 Score: 227 bits (578), Expect = 1.430e-68 Identity = 118/195 (60.51%), Postives = 140/195 (71.79%), Query Frame = 1
Query: 1 PQISGAIWAGALLVFLYTISDWGAVNLLRYDTLTRDIYADRLFDQPRAMGLSLVLAVVALTVVAAERSLDRRRQRLEVVQTRDALTVPLGRWKWPAVATVVLVLGNALAGPVGVFAFWAWRGLRVDSPAIGLGTDVGALVDPAIHTAQAGLITAAVAIAVVLPVAWLTARYRSRVGGTANSMVVAGFALPGVVIA 585
PQ GAIWAG+LLVFLY ISD+GAV LL YDTLT IYADRLFDQ R+M L+L+LA+ + VV ER + + + V + + VPLGRW+WPAV VV V+GNAL GPV + FWAWRG+ D +IG D GALV PAI TA L+TA VLP+AWLTARYRSRVG AN++VVAGFA+PGVVIA
Sbjct: 192 PQAKGAIWAGSLLVFLYAISDFGAVALLGYDTLTEQIYADRLFDQARSMALALLLALTTVGVVVLERRMRGQLDTAQTVSSVELAPVPLGRWRWPAVFGVVTVVGNALIGPVAILGFWAWRGMTSDVASIGRSFDAGALVGPAIRTALIALVTAXXXXXXVLPIAWLTARYRSRVGEIANALVVAGFAIPGVVIA 386
BLAST of mRNA_M-pyrifera_M_contig112275.2570.1 vs. uniprot
Match: UPI001F2A5E5E (iron ABC transporter permease n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001F2A5E5E) HSP 1 Score: 213 bits (542), Expect = 7.280e-64 Identity = 117/196 (59.69%), Postives = 143/196 (72.96%), Query Frame = 1
Query: 1 PQISGAIWAGALLVFLYTISDWGAVNLLRYDTLTRDIYADRLFDQPRAMGLSLVLAVVALTVVAAERSLDRRRQRLEVVQTRDALTVPLGRWKWPAVATVVLVLGNALAGPVGVFAFWAWRGL-RVDSPAIGLGTDVGALVDPAIHTAQAGLITAAVAIAVVLPVAWLTARYRSRVGGTANSMVVAGFALPGVVIA 585
PQ + A+WAGALLVFLY ISD+GAV L+RY TLTR+I++ RL D ++ LSLVLAVVAL VVAAER+ RRR R E V+ + L VPLGRW+WPA VV VLG AL PV V A+WA RGL S + L TD+GAL PA +T L+ A VA+ VV+PVA+LT R+RSRV G +N+ VVAGFALPG+V+A
Sbjct: 126 PQAASAVWAGALLVFLYAISDFGAVELMRYGTLTREIFSTRL-DPATSVPLSLVLAVVALVVVAAERAAGRRRARTEAVRQKRPLKVPLGRWRWPATGAVVAVLGLALLAPVAVLAYWAGRGLANPGSGTVELRTDLGALGAPAFNTISVSLVAAVVAVVVVMPVAYLTTRHRSRVSGVSNAFVVAGFALPGLVVA 320
BLAST of mRNA_M-pyrifera_M_contig112275.2570.1 vs. uniprot
Match: A0A7V9GII1_9ACTN (Iron ABC transporter permease n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9GII1_9ACTN) HSP 1 Score: 201 bits (510), Expect = 2.370e-58 Identity = 109/195 (55.90%), Postives = 136/195 (69.74%), Query Frame = 1
Query: 1 PQISGAIWAGALLVFLYTISDWGAVNLLRYDTLTRDIYADRLFDQPRAMGLSLVLAVVALTVVAAERSLDRRRQRLEVVQTRDALTVPLGRWKWPAVATVVLVLGNALAGPVGVFAFWAWRGLRVDSPAIGLGTDVGALVDPAIHTAQAGLITAAVAIAVVLPVAWLTARYRSRVGGTANSMVVAGFALPGVVIA 585
PQ + AIWAG LLVFLY +SD+GAV LRY TLT +I+ RLF+QP A+ L LVLAVVAL VVA ER RRR +EV + + AL VPLGRW+WPA A +V +AL GP+ V +W+ RG D+G LV+PA+ T GL AA+ IAVVLPVA+LT+RYRSR+GG N+ VV GFALPG+++A
Sbjct: 210 PQAATAIWAGTLLVFLYVVSDFGAVAQLRYRTLTVEIFDSRLFNQPEALFLGLVLAVVALAVVALERRAQRRRSVVEVARAKRALVVPLGRWRWPATAMASVVAVSALLGPLAVLGYWSVRGYVAGDERAR--PDLGELVEPAVATGALGLGAAALTIAVVLPVAYLTSRYRSRLGGVVNAAVVGGFALPGLIVA 402
BLAST of mRNA_M-pyrifera_M_contig112275.2570.1 vs. uniprot
Match: A0A7V8YRQ1_9ACTN (Iron ABC transporter permease n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V8YRQ1_9ACTN) HSP 1 Score: 192 bits (487), Expect = 2.540e-55 Identity = 115/196 (58.67%), Postives = 137/196 (69.90%), Query Frame = 1
Query: 1 PQISGAIWAGALLVFLYTISDWGAVNLLRYDTLTRDIYADRLFDQPRAMGLSLVLAVVALTVVAAERSLDRRRQRLEVVQT-RDALTVPLGRWKWPAVATVVLVLGNALAGPVGVFAFWAWRGLRVDSPAIGLGTDVGALVDPAIHTAQAGLITAAVAIAVVLPVAWLTARYRSRVGGTANSMVVAGFALPGVVIA 585
PQ +GAI AGALLVFLY ISD+GAV+LLRYDTLT I + RLFD P A+ L L+LAVVAL VV +ER L RRR E V R L PLG WK PA+A VV V+G AL PV V A W RGL D A G+ + L P ++T ++TA VA+AVVLPVA+LT R++SRVG AN++VVAGFALPG+VIA
Sbjct: 167 PQATGAIAAGALLVFLYVISDFGAVSLLRYDTLTVRIESARLFDPPTALALGLLLAVVALVVVMSERGLSRRRVNTEAVAAGRRPLQAPLGVWKAPALALVVGVVGIALVAPVAVLAQWTLRGLGEDRAARGV--EWSDLWQPLLNTGGIAVVTAVVAVAVVLPVAYLTTRHQSRVGAVANALVVAGFALPGLVIA 360
BLAST of mRNA_M-pyrifera_M_contig112275.2570.1 vs. uniprot
Match: A0A838PRW5_9ACTN (Iron ABC transporter permease n=3 Tax=Euzebyales TaxID=908621 RepID=A0A838PRW5_9ACTN) HSP 1 Score: 186 bits (471), Expect = 1.080e-52 Identity = 114/198 (57.58%), Postives = 142/198 (71.72%), Query Frame = 1
Query: 1 PQISGAIWAGALLVFLYTISDWGAVNLLRYDTLTRDIYADRLFDQPRAMGLSLVLAVVALTVVAAERSLDRRRQRLEVVQTRD--ALTVPLGRWKWPAVATVVLVLGNALAGPVGVFAFWAWRG-LRVDSPAIGLGTDVGALVDPAIHTAQAGLITAAVAIAVVLPVAWLTARYRSRVGGTANSMVVAGFALPGVVIA 585
PQ SGAI AG+LLVFLYTISD+GAV LLRYDTLTR IYA RL DQP ++ SL L V+A+ VVAAER+L R R VV +RD AL V LGRW+ A A V + ALA PV V A+W+ RG LR S A + TD +L+ P ++TA+A ++TA VA+ VLP+A+ T RYRSR+ G AN++VV GFALPG+V+A
Sbjct: 200 PQTSGAILAGSLLVFLYTISDFGAVQLLRYDTLTRAIYASRL-DQPTSLAYSLQLGVLAIAVVAAERALLRGPSR--VVGSRDSRALRVALGRWRVAATAGVAGLAVFALAAPVTVLAYWSARGMLRGSSRATAVTTDPASLLAPMLNTARASVLTAVVAVVAVLPLAYWTVRYRSRLAGVANAVVVGGFALPGLVVA 394
BLAST of mRNA_M-pyrifera_M_contig112275.2570.1 vs. uniprot
Match: A0A6G0A8R7_9ACTN (Iron ABC transporter permease n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0A8R7_9ACTN) HSP 1 Score: 181 bits (460), Expect = 4.600e-51 Identity = 96/195 (49.23%), Postives = 137/195 (70.26%), Query Frame = 1
Query: 1 PQISGAIWAGALLVFLYTISDWGAVNLLRYDTLTRDIYADRLFDQPRAMGLSLVLAVVALTVVAAERSLDRRRQRLEVVQTRDALTVPLGRWKWPAVATVVLVLGNALAGPVGVFAFWAWRGLRVDSPAIGLGTDVGALVDPAIHTAQAGLITAAVAIAVVLPVAWLTARYRSRVGGTANSMVVAGFALPGVVIA 585
PQ + +IWAG+LLVFLYT+SD+G V++LRY+TLTR+IY +R++DQPRAM L+L+L + A+ VV AERS+++RR E V L W+WPA A ++ LGNAL GP+ A+WA +G + LG + + PA+++A +I+A +A+ VLPVA+LTAR+R+R GG AN+ VV GFALPG+ +A
Sbjct: 206 PQTAPSIWAGSLLVFLYTLSDFGVVDILRYNTLTREIYTNRVYDQPRAMALALLLGIFAVLVVTAERSVNKRRPVTEASGRSRPHQVALRHWRWPAFAFMLAFLGNALLGPMLSLAWWASKGFANEGWGH-LGQLLSEVSQPALNSAWISVISALIAVVAVLPVAYLTARHRNRPGGLANAFVVGGFALPGLAVA 399
BLAST of mRNA_M-pyrifera_M_contig112275.2570.1 vs. uniprot
Match: A0A7C4TGV3_9ACTN (Iron ABC transporter permease n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7C4TGV3_9ACTN) HSP 1 Score: 179 bits (455), Expect = 2.420e-50 Identity = 105/196 (53.57%), Postives = 129/196 (65.82%), Query Frame = 1
Query: 1 PQISGAIWAGALLVFLYTISDWGAVNLLRYDTLTRDIYADRLFDQPRAMGLSLVLAVVALTVVAAERSLDRRRQRLEVVQT-RDALTVPLGRWKWPAVATVVLVLGNALAGPVGVFAFWAWRGLRVDSPAIGLGTDVGALVDPAIHTAQAGLITAAVAIAVVLPVAWLTARYRSRVGGTANSMVVAGFALPGVVIA 585
PQ GAI G LLVFLY +S++GAV+L+RYDTLT I A RLF + + LS++LAVVALTVV ER+ RRR +E V R +L LG WK PA+ V LV G AL PV V WAWRGLR S G G + L P ++TA ++ A V +A VLP+A+LT RYRSR GG N++VV GFALPG+VIA
Sbjct: 202 PQSWGAIAGGTLLVFLYAVSEFGAVSLMRYDTLTLRIEATRLFARDTSTTLSMLLAVVALTVVVVERATVRRRAGVEAVGAGRRSLQHSLGIWKLPALGMVALVTGLALVAPVVVLGQWAWRGLRGTSRFGGPGVALSELTTPLVNTAGISVVAALVTVAAVLPIAYLTVRYRSRAGGAVNAVVVGGFALPGLVIA 397
BLAST of mRNA_M-pyrifera_M_contig112275.2570.1 vs. uniprot
Match: A0A355QHL8_9ACTN (Iron ABC transporter permease n=3 Tax=root TaxID=1 RepID=A0A355QHL8_9ACTN) HSP 1 Score: 179 bits (454), Expect = 3.390e-50 Identity = 102/196 (52.04%), Postives = 133/196 (67.86%), Query Frame = 1
Query: 1 PQISGAIWAGALLVFLYTISDWGAVNLLRYDTLTRDIYADRLFDQPRAMGLSLVLAVVALTVVAAERSLDRRRQRLEVVQTRDALTVPLGRWKWPAVATVVLVLGNALAGPVGVFAFWAWRG-LRVDSPAIGLGTDVGALVDPAIHTAQAGLITAAVAIAVVLPVAWLTARYRSRVGGTANSMVVAGFALPGVVIA 585
PQ S +I AG+LLVFLYT+SD+GAV+L+R++TLT+ IY RLFDQ R+ L+L+L +AL V+A ER++ RR R EV+ R +L +PLGRWK A+AT LV+G AL P A W G R L D G + T ++TAAVAIAVVLPVA+L AR+RSR+GG N +VVAGFA+PG+V+A
Sbjct: 202 PQASSSIGAGSLLVFLYTVSDFGAVHLMRFETLTQTIYRTRLFDQGRSFALALLLLALALVVIATERTVARRGSRTEVIGDRSSLLIPLGRWKAAAIATCSLVVGLALFAPAVSLADWGLFGWFRQRRGLAELRLDWGNVAGATWSTVWVSMVTAAVAIAVVLPVAYLLARHRSRLGGIVNGVVVAGFAIPGLVVA 397 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112275.2570.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig112275.2570.1 >prot_M-pyrifera_M_contig112275.2570.1 ID=prot_M-pyrifera_M_contig112275.2570.1|Name=mRNA_M-pyrifera_M_contig112275.2570.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=195bp PQISGAIWAGALLVFLYTISDWGAVNLLRYDTLTRDIYADRLFDQPRAMGback to top mRNA from alignment at M-pyrifera_M_contig112275:1..585- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig112275.2570.1 ID=mRNA_M-pyrifera_M_contig112275.2570.1|Name=mRNA_M-pyrifera_M_contig112275.2570.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=585bp|location=Sequence derived from alignment at M-pyrifera_M_contig112275:1..585- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig112275:1..585- >mRNA_M-pyrifera_M_contig112275.2570.1 ID=mRNA_M-pyrifera_M_contig112275.2570.1|Name=mRNA_M-pyrifera_M_contig112275.2570.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1170bp|location=Sequence derived from alignment at M-pyrifera_M_contig112275:1..585- (Macrocystis pyrifera P11B4 male)back to top |