mRNA_M-pyrifera_M_contig112239.2565.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112239.2565.1
Unique NamemRNA_M-pyrifera_M_contig112239.2565.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112239.2565.1 vs. uniprot
Match: A0A210PQW0_MIZYE (Cathepsin B n=2 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210PQW0_MIZYE)

HSP 1 Score: 256 bits (654), Expect = 3.020e-82
Identity = 122/183 (66.67%), Postives = 141/183 (77.05%), Query Frame = 1 
Query:    1 GCSGGYPSAAWSYFTQTGISTGGAYGDYSWCRSYTLKPCDHHTSGKYGPCPSSIAPTPSCDQSCDSQSTYATKYAQDKHVFSSSYSVSSDPSAIQTEIMNNGPVEAAFTVYSDFLSYKSGVYSHTTGSELGGHAIKILGWGSESGTPYWLVANSWNTDWGAEGFFKIRRGSDECGIESGVVAG 549
            GC GG+P +AWS+F   G+ TGG Y     CR Y++KPC+HHT+G   PC  SI PTP C+ SC  QS+Y+  Y +DKH  SSSYSVSSD + IQTEIM++GPVE AFTVY+DF +YKSGVY HTTGSELGGHAI+ILGWG E G  YWLVANSWNTDWG  GFFKI RG DECGIES +VAG
Sbjct:  167 GCDGGFPGSAWSFFKGKGLVTGGQYNSTQGCRPYSIKPCEHHTTGTRLPCAKSIEPTPKCEMSC--QSSYSVSYTKDKHFGSSSYSVSSDVTDIQTEIMSHGPVEGAFTVYADFPTYKSGVYKHTTGSELGGHAIRILGWGVEEGVDYWLVANSWNTDWGDNGFFKILRGQDECGIESQIVAG 347
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BLAST of mRNA_M-pyrifera_M_contig112239.2565.1 vs. uniprot
Match: A7SNX0_NEMVE (Predicted protein n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7SNX0_NEMVE)

HSP 1 Score: 243 bits (620), Expect = 2.410e-78
Identity = 113/183 (61.75%), Postives = 137/183 (74.86%), Query Frame = 1 
Query:    1 GCSGGYPSAAWSYFTQTGISTGGAYGDYSWCRSYTLKPCDHHTSGKYGPCPSSIAPTPSCDQSCDSQSTYATKYAQDKHVFSSSYSVSSDPSAIQTEIMNNGPVEAAFTVYSDFLSYKSGVYSHTTGSELGGHAIKILGWGSESGTPYWLVANSWNTDWGAEGFFKIRRGSDECGIESGVVAG 549
            GC+GGYP +AW ++   G+ TGG Y  +  C+ Y +  CDHH  GK  PC    +PTP C++ C++   Y   Y+ DKH   S+YSV SDP+ IQ EIM NGPVE AFTVY+DF +YKSGVY HT+GS LGGHAIKILGWG E+GTPYWLVANSWN+DWG EGFFKI+RG+DECGIESG+V G
Sbjct:   72 GCNGGYPESAWDHWKSKGLVTGGQYDSHKGCQPYKIAACDHHVVGKLKPCKGD-SPTPKCERKCEAG--YNVSYSDDKHFGQSAYSVRSDPAEIQKEIMTNGPVEGAFTVYADFPTYKSGVYQHTSGSALGGHAIKILGWGEENGTPYWLVANSWNSDWGDEGFFKIKRGNDECGIESGIVGG 251
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BLAST of mRNA_M-pyrifera_M_contig112239.2565.1 vs. uniprot
Match: UPI0019B3D5BD (cathepsin B n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI0019B3D5BD)

HSP 1 Score: 245 bits (626), Expect = 2.750e-78
Identity = 113/183 (61.75%), Postives = 132/183 (72.13%), Query Frame = 1 
Query:    1 GCSGGYPSAAWSYFTQTGISTGGAYGDYSWCRSYTLKPCDHHTSGKYGPCPSSIAPTPSCDQSCDSQSTYATKYAQDKHVFSSSYSVSSDPSAIQTEIMNNGPVEAAFTVYSDFLSYKSGVYSHTTGSELGGHAIKILGWGSESGTPYWLVANSWNTDWGAEGFFKIRRGSDECGIESGVVAG 549
            GC+GGYPSAAW ++T  G+ TGG Y  +  CR YT++PC+HHT+G   PC      TPSCDQ C+    Y   Y QDKH    +Y VSSD   I  E+  NGPVE AF+V+ DFLSYKSGVY H TG+E+GGHAIKILGWG E+GTPYWL ANSWNTDWG  G+FKI RG D CGIESG+VAG
Sbjct:  147 GCNGGYPSAAWEFWTSEGLVTGGLYDSHIGCRPYTIEPCEHHTNGSRPPCTGEGGDTPSCDQKCEPG--YGISYVQDKHYGKEAYQVSSDEKQIMAELYKNGPVEGAFSVFEDFLSYKSGVYKHITGAEVGGHAIKILGWGEENGTPYWLAANSWNTDWGDNGYFKILRGEDHCGIESGIVAG 327
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BLAST of mRNA_M-pyrifera_M_contig112239.2565.1 vs. uniprot
Match: A0A498NSG7_LABRO (Cathepsin B n=2 Tax=Labeo rohita TaxID=84645 RepID=A0A498NSG7_LABRO)

HSP 1 Score: 244 bits (624), Expect = 5.690e-78
Identity = 116/183 (63.39%), Postives = 137/183 (74.86%), Query Frame = 1 
Query:    1 GCSGGYPSAAWSYFTQTGISTGGAYGDYSWCRSYTLKPCDHHTSGKYGPCPSSIAPTPSCDQSCDSQSTYATKYAQDKHVFSSSYSVSSDPSAIQTEIMNNGPVEAAFTVYSDFLSYKSGVYSHTTGSELGGHAIKILGWGSESGTPYWLVANSWNTDWGAEGFFKIRRGSDECGIESGVVAG 549
            GCSGG+PSAAW Y+T++G+ TGG YG    CR Y++ PC+HH +G   PC S    TP CD +C SQ  Y+  Y QDKH    +Y+V SDP  I TEI  NGPVEA+FTVY DFL YKSGVY H TGSELGGH++K LGWG E+GTPYWLVANSWN+DWG +G+FKI RG DECGIES +VAG
Sbjct:  148 GCSGGFPSAAWDYWTKSGLVTGGLYGSNVGCRPYSIAPCEHHVNGTRPPC-SGEQDTPECDAACISQ--YSVSYKQDKHFGYKAYNVPSDPQQIMTEIYTNGPVEASFTVYEDFLLYKSGVYQHLTGSELGGHSVKFLGWGEENGTPYWLVANSWNSDWGDKGYFKILRGKDECGIESEIVAG 327
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BLAST of mRNA_M-pyrifera_M_contig112239.2565.1 vs. uniprot
Match: UPI001458D151 (cathepsin B-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI001458D151)

HSP 1 Score: 244 bits (623), Expect = 1.560e-77
Identity = 114/183 (62.30%), Postives = 136/183 (74.32%), Query Frame = 1 
Query:    1 GCSGGYPSAAWSYFTQTGISTGGAYGDYSWCRSYTLKPCDHHTSGKYGPCPSSIAPTPSCDQSCDSQSTYATKYAQDKHVFSSSYSVSSDPSAIQTEIMNNGPVEAAFTVYSDFLSYKSGVYSHTTGSELGGHAIKILGWGSESGTPYWLVANSWNTDWGAEGFFKIRRGSDECGIESGVVAG 549
            GC GG+  AAWSYF + G+ +GG YG +  CR Y+++PC+HH  GK  PC   I PTP C++ C+S   Y   Y  DKH  +SSYSVS D S IQTEI+ NGPVE AFTVY+DF +YKSGVY H TGSELGGHAI+ILGWG E G  YWLVANSWN+DWG  G+FKI+RG+DECGIES + AG
Sbjct:  160 GCDGGFLGAAWSYFKRVGVVSGGQYGSHQGCRPYSIEPCEHHVPGKLLPCNKDIKPTPKCNEKCESN--YQVSYNSDKHYGNSSYSVSGDVSDIQTEIITNGPVEGAFTVYADFPTYKSGVYQHKTGSELGGHAIRILGWGVEGGVDYWLVANSWNSDWGDNGYFKIKRGTDECGIESQISAG 340
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BLAST of mRNA_M-pyrifera_M_contig112239.2565.1 vs. uniprot
Match: A0A3N0YGJ8_ANAGA (Cathepsin B n=2 Tax=Xenocypridinae TaxID=2743747 RepID=A0A3N0YGJ8_ANAGA)

HSP 1 Score: 243 bits (619), Expect = 3.150e-77
Identity = 116/183 (63.39%), Postives = 134/183 (73.22%), Query Frame = 1 
Query:    1 GCSGGYPSAAWSYFTQTGISTGGAYGDYSWCRSYTLKPCDHHTSGKYGPCPSSIAPTPSCDQSCDSQSTYATKYAQDKHVFSSSYSVSSDPSAIQTEIMNNGPVEAAFTVYSDFLSYKSGVYSHTTGSELGGHAIKILGWGSESGTPYWLVANSWNTDWGAEGFFKIRRGSDECGIESGVVAG 549
            GCSGGYPS AW Y+T++G+ TGG YG    CR YT+ PC+HH +G   PC S    TP CD +C  Q  Y+  Y QDKH    +Y++ SD   I TE+ NNGPVEAAFTVY DFL YK+GVY H TGSELGGHA+KILGWG E GTPYWLVANSWN+DWG  G+FKI RG DECGIES +VAG
Sbjct:  147 GCSGGYPSEAWDYWTKSGLVTGGLYGSNEGCRPYTIPPCEHHVNGTRPPC-SGEQDTPECDAACVPQ--YSVPYKQDKHFGYKAYNLPSDQQQIMTELYNNGPVEAAFTVYEDFLLYKTGVYQHVTGSELGGHAVKILGWGEEKGTPYWLVANSWNSDWGDNGYFKILRGRDECGIESEMVAG 326
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BLAST of mRNA_M-pyrifera_M_contig112239.2565.1 vs. uniprot
Match: A0A6P8HVF3_ACTTE (cathepsin B-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8HVF3_ACTTE)

HSP 1 Score: 241 bits (616), Expect = 9.810e-77
Identity = 117/183 (63.93%), Postives = 132/183 (72.13%), Query Frame = 1 
Query:    1 GCSGGYPSAAWSYFTQTGISTGGAYGDYSWCRSYTLKPCDHHTSGKYGPCPSSIAPTPSCDQSCDSQSTYATKYAQDKHVFSSSYSVSSDPSAIQTEIMNNGPVEAAFTVYSDFLSYKSGVYSHTTGSELGGHAIKILGWGSESGTPYWLVANSWNTDWGAEGFFKIRRGSDECGIESGVVAG 549
            GC+GGYP AAW Y+   GI TGG YG +  C+ Y +  CDHH  GK  PC   I PTP C   C++   Y   Y+ DK    S+YSV SDPS IQ EIM NGPVE AFTVY+DF +YKSGVY H +G ELGGHAIKILGWG E+GTPYWLVANSWN DWG +GFFKI RGSDECGIESG+V G
Sbjct:  149 GCNGGYPEAAWQYWKNDGIVTGGQYGSHEGCQPYLIAKCDHHVVGKLLPC-KGIQPTPECKHKCEAG--YNVSYSDDKRHGMSAYSVGSDPSEIQKEIMTNGPVEGAFTVYADFPTYKSGVYQHKSGGELGGHAIKILGWGVENGTPYWLVANSWNPDWGDKGFFKILRGSDECGIESGIVGG 328
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BLAST of mRNA_M-pyrifera_M_contig112239.2565.1 vs. uniprot
Match: A0A556UF99_BAGYA (Cathepsin B n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556UF99_BAGYA)

HSP 1 Score: 240 bits (612), Expect = 1.160e-76
Identity = 109/183 (59.56%), Postives = 133/183 (72.68%), Query Frame = 1 
Query:    1 GCSGGYPSAAWSYFTQTGISTGGAYGDYSWCRSYTLKPCDHHTSGKYGPCPSSIAPTPSCDQSCDSQSTYATKYAQDKHVFSSSYSVSSDPSAIQTEIMNNGPVEAAFTVYSDFLSYKSGVYSHTTGSELGGHAIKILGWGSESGTPYWLVANSWNTDWGAEGFFKIRRGSDECGIESGVVAG 549
            GC+GGYPSAAW+++T+ G+ TGG Y  +  CR YT++PC+HHT+G   PC      TP+CD+ C+    Y   Y QDKH    +Y V +D + I TE+  NGPVE AF+VY DFL YKSGVY H TG+E+GGHAIKILGWG E+GTPYWL ANSWNTDWG  G+FKI RG D CGIES +VAG
Sbjct:  110 GCNGGYPSAAWNFWTEQGLVTGGLYNSHIGCRPYTIEPCEHHTNGSRPPCTGEGGDTPNCDKKCEPG--YGVSYMQDKHFGKQAYRVPADETQIMTELYKNGPVEGAFSVYEDFLMYKSGVYKHVTGAEVGGHAIKILGWGEENGTPYWLAANSWNTDWGDNGYFKILRGEDHCGIESEIVAG 290
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BLAST of mRNA_M-pyrifera_M_contig112239.2565.1 vs. uniprot
Match: A0A1S3JJ47_LINUN (cathepsin B n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JJ47_LINUN)

HSP 1 Score: 239 bits (611), Expect = 8.500e-76
Identity = 114/183 (62.30%), Postives = 137/183 (74.86%), Query Frame = 1 
Query:    1 GCSGGYPSAAWSYFTQTGISTGGAYGDYSWCRSYTLKPCDHHTSGKYGPCPSSIAPTPSCDQSCDSQSTYATKYAQDKHVFSSSYSVSSDPSAIQTEIMNNGPVEAAFTVYSDFLSYKSGVYSHTTGSELGGHAIKILGWGSESGTPYWLVANSWNTDWGAEGFFKIRRGSDECGIESGVVAG 549
            GC+GG+P  AWSY+ + GI +GG YG +  CR Y+L  C+HH +G    C     PTP C++ C+S   Y+  Y +DK+   S YSV S   +IQTEIM NGPVE AFTVY+DF SYKSGVY HT+GS LGGHAIK+LGWG ESGTPYWLVANSWN DWG +GFFKI+RG+DECGIESG+VAG
Sbjct:  163 GCNGGFPGGAWSYWVRDGIVSGGQYGSHQGCRPYSLPSCEHHVNGSKPACKGDD-PTPRCEKKCESG--YSVSYKEDKNYGKSHYSVRSSEKSIQTEIMTNGPVEGAFTVYADFPSYKSGVYHHTSGSALGGHAIKVLGWGVESGTPYWLVANSWNPDWGDQGFFKIKRGTDECGIESGIVAG 342
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BLAST of mRNA_M-pyrifera_M_contig112239.2565.1 vs. uniprot
Match: UPI0019557B46 (cathepsin B isoform X3 n=1 Tax=Pimephales promelas TaxID=90988 RepID=UPI0019557B46)

HSP 1 Score: 234 bits (598), Expect = 1.000e-75
Identity = 109/183 (59.56%), Postives = 130/183 (71.04%), Query Frame = 1 
Query:    1 GCSGGYPSAAWSYFTQTGISTGGAYGDYSWCRSYTLKPCDHHTSGKYGPCPSSIAPTPSCDQSCDSQSTYATKYAQDKHVFSSSYSVSSDPSAIQTEIMNNGPVEAAFTVYSDFLSYKSGVYSHTTGSELGGHAIKILGWGSESGTPYWLVANSWNTDWGAEGFFKIRRGSDECGIESGVVAG 549
            GC+GGYPSAAW Y+   G+ TGG Y  +  CR YT++PC+HH +G   PC      TP+C+ SC++   Y+  Y +DKH   +SYSV S+  AI  E+  NGPVEAAFTVY DFL YKSGVY H +G+ LGGHAIKILGWG E+  PYWL ANSWNTDWG  GFFKI RG D CGIES +VAG
Sbjct:   25 GCNGGYPSAAWQYWNTEGLVTGGLYNSHVGCRPYTIEPCEHHVNGSRPPCTGEGGDTPNCEMSCETG--YSPSYKEDKHFGKTSYSVPSNQKAIMQELFKNGPVEAAFTVYDDFLLYKSGVYQHVSGAPLGGHAIKILGWGEENSVPYWLAANSWNTDWGDNGFFKILRGEDHCGIESEIVAG 205
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112239.2565.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A210PQW0_MIZYE3.020e-8266.67Cathepsin B n=2 Tax=Mizuhopecten yessoensis TaxID=... [more]
A7SNX0_NEMVE2.410e-7861.75Predicted protein n=2 Tax=Nematostella vectensis T... [more]
UPI0019B3D5BD2.750e-7861.75cathepsin B n=1 Tax=Silurus meridionalis TaxID=175... [more]
A0A498NSG7_LABRO5.690e-7863.39Cathepsin B n=2 Tax=Labeo rohita TaxID=84645 RepID... [more]
UPI001458D1511.560e-7762.30cathepsin B-like n=1 Tax=Pecten maximus TaxID=6579... [more]
A0A3N0YGJ8_ANAGA3.150e-7763.39Cathepsin B n=2 Tax=Xenocypridinae TaxID=2743747 R... [more]
A0A6P8HVF3_ACTTE9.810e-7763.93cathepsin B-like n=1 Tax=Actinia tenebrosa TaxID=6... [more]
A0A556UF99_BAGYA1.160e-7659.56Cathepsin B n=1 Tax=Bagarius yarrelli TaxID=175774... [more]
A0A1S3JJ47_LINUN8.500e-7662.30cathepsin B n=1 Tax=Lingula unguis TaxID=7574 RepI... [more]
UPI0019557B461.000e-7559.56cathepsin B isoform X3 n=1 Tax=Pimephales promelas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112239contigM-pyrifera_M_contig112239:29..586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score245.4
Seed ortholog evalue2.2e-62
Seed eggNOG ortholog45351.EDO34588
Preferred nameCTSB
KEGG koko:K01363
KEGG Pathwayko04140,ko04142,ko04210,ko04612,ko04621,ko04924,map04140,map04142,map04210,map04612,map04621,map04924
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000323,GO:0001775,GO:0001890,GO:0001893,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004252,GO:0005488,GO:0005515,GO:0005518,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005764,GO:0005768,GO:0005773,GO:0005775,GO:0005886,GO:0006508,GO:0006807,GO:0006810,GO:0006887,GO:0006914,GO:0006950,GO:0006955,GO:0007275,GO:0007276,GO:0007283,GO:0007517,GO:0007519,GO:0007565,GO:0008150,GO:0008152,GO:0008219,GO:0008233,GO:0008234,GO:0008236,GO:0009056,GO:0009057,GO:0009605,GO:0009611,GO:0009612,GO:0009628,GO:0009636,GO:0009719,GO:0009725,GO:0009743,GO:0009746,GO:0009749,GO:0009888,GO:0009897,GO:0009986,GO:0009987,GO:0010033,GO:0010243,GO:0010941,GO:0012501,GO:0012505,GO:0014070,GO:0014075,GO:0014706,GO:0016020,GO:0016032,GO:0016192,GO:0016324,GO:0016787,GO:0017171,GO:0019058,GO:0019538,GO:0019953,GO:0022414,GO:0030141,GO:0030154,GO:0030163,GO:0030260,GO:0030574,GO:0030855,GO:0030984,GO:0031410,GO:0031904,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032870,GO:0032940,GO:0032963,GO:0033218,GO:0034097,GO:0034284,GO:0036019,GO:0036021,GO:0036230,GO:0042119,GO:0042221,GO:0042277,GO:0042383,GO:0042493,GO:0042981,GO:0043067,GO:0043170,GO:0043202,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043394,GO:0043434,GO:0043621,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044409,GO:0044419,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044706,GO:0044877,GO:0045055,GO:0045177,GO:0045321,GO:0045471,GO:0046677,GO:0046697,GO:0046718,GO:0046903,GO:0048232,GO:0048471,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0051701,GO:0051704,GO:0051716,GO:0051806,GO:0051828,GO:0060135,GO:0060429,GO:0060537,GO:0060538,GO:0060548,GO:0061061,GO:0061458,GO:0061919,GO:0065007,GO:0070011,GO:0070013,GO:0070670,GO:0070887,GO:0071214,GO:0071260,GO:0071310,GO:0071495,GO:0071496,GO:0071704,GO:0071944,GO:0097066,GO:0097067,GO:0097305,GO:0097367,GO:0097708,GO:0098552,GO:0098590,GO:0099503,GO:0101002,GO:0104004,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901652,GO:1901698,GO:1901700,GO:1904813
EggNOG free text desc.cysteine-type peptidase activity
EggNOG OGs38F8F@33154,3BI1S@33208,COG4870@1,KOG1543@2759
EC3.4.22.1
COG Functional cat.O
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00536,ko01000,ko01002,ko03110,ko04147
Exons1
Model size558
Cds size558
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.352035-CDS-M-pyrifera_M_contig112239:28..5861622815636.352035-CDS-M-pyrifera_M_contig112239:28..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112239 29..586 -
1692277498.5973685-CDS-M-pyrifera_M_contig112239:28..5861692277498.5973685-CDS-M-pyrifera_M_contig112239:28..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112239 29..586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112239.2565.1prot_M-pyrifera_M_contig112239.2565.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112239 29..586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112239.2565.1

>prot_M-pyrifera_M_contig112239.2565.1 ID=prot_M-pyrifera_M_contig112239.2565.1|Name=mRNA_M-pyrifera_M_contig112239.2565.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=186bp
GCSGGYPSAAWSYFTQTGISTGGAYGDYSWCRSYTLKPCDHHTSGKYGPC
PSSIAPTPSCDQSCDSQSTYATKYAQDKHVFSSSYSVSSDPSAIQTEIMN
NGPVEAAFTVYSDFLSYKSGVYSHTTGSELGGHAIKILGWGSESGTPYWL
VANSWNTDWGAEGFFKIRRGSDECGIESGVVAGKY*
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mRNA from alignment at M-pyrifera_M_contig112239:29..586-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112239.2565.1 ID=mRNA_M-pyrifera_M_contig112239.2565.1|Name=mRNA_M-pyrifera_M_contig112239.2565.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig112239:29..586- (Macrocystis pyrifera P11B4 male)
GGCTGCAGCGGCGGCTACCCGTCTGCTGCCTGGAGCTACTTCACGCAGAC
CGGCATCTCCACCGGTGGTGCTTACGGCGACTACTCCTGGTGCCGCTCGT
ACACCCTCAAGCCGTGCGACCACCACACGTCTGGCAAGTACGGCCCGTGC
CCGTCTTCCATCGCGCCCACGCCCAGCTGCGACCAGTCGTGCGACTCTCA
GAGCACCTACGCCACCAAGTACGCGCAGGACAAGCACGTCTTCTCCTCCT
CCTACTCCGTCTCCTCCGACCCGTCTGCCATCCAGACCGAGATCATGAAC
AACGGACCCGTCGAGGCTGCGTTCACTGTCTACTCCGACTTCCTCTCCTA
CAAGTCTGGCGTCTACTCCCACACCACCGGCAGCGAGCTCGGCGGACACG
CCATCAAGATCCTCGGATGGGGCTCTGAGAGCGGAACCCCGTACTGGCTC
GTCGCCAACAGCTGGAACACCGACTGGGGTGCCGAGGGATTCTTCAAGAT
CCGCCGCGGCAGCGATGAGTGCGGAATCGAGTCTGGCGTCGTCGCTGGCA
AGTACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112239:29..586-

>mRNA_M-pyrifera_M_contig112239.2565.1 ID=mRNA_M-pyrifera_M_contig112239.2565.1|Name=mRNA_M-pyrifera_M_contig112239.2565.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1116bp|location=Sequence derived from alignment at M-pyrifera_M_contig112239:29..586- (Macrocystis pyrifera P11B4 male)
GGCTGCAGCGGCGGCTACCCGTCTGCTGCCTGGAGCTACTTCACGCAGAC
CGGCATCTCCACCGGTGGTGCTTACGGCGACTACTCCTGGTGCCGCTCGT
ACACCCTCAAGCCGTGCGACCACCACACGTCTGGCAAGTACGGCCCGTGC
CCGTCTTCCATCGCGCCCACGCCCAGCTGCGACCAGTCGTGCGACTCTCA
GAGCACCTACGCCACCAAGTACGCGCAGGACAAGCACGTCTTCTCCTCCT
CCTACTCCGTCTCCTCCGACCCGTCTGCCATCCAGACCGAGATCATGAAC
AACGGACCCGTCGAGGCTGCGTTCACTGTCTACTCCGACTTCCTCTCCTA
CAAGTCTGGCGTCTACTCCCACACCACCGGCAGCGAGCTCGGCGGACACG
CCATCAAGATCCTCGGATGGGGCTCTGAGAGCGGAACCCCGTACTGGCTC
GTCGCCAACAGCTGGAACACCGACTGGGGTGCCGAGGGATTCTTCAAGAT
CCGCCGCGGCAGCGATGAGTGCGGAATCGAGTCTGGCGTCGTCGCTGGCA
AGTACTAAGGCTGCAGCGGCGGCTACCCGTCTGCTGCCTGGAGCTACTTC
ACGCAGACCGGCATCTCCACCGGTGGTGCTTACGGCGACTACTCCTGGTG
CCGCTCGTACACCCTCAAGCCGTGCGACCACCACACGTCTGGCAAGTACG
GCCCGTGCCCGTCTTCCATCGCGCCCACGCCCAGCTGCGACCAGTCGTGC
GACTCTCAGAGCACCTACGCCACCAAGTACGCGCAGGACAAGCACGTCTT
CTCCTCCTCCTACTCCGTCTCCTCCGACCCGTCTGCCATCCAGACCGAGA
TCATGAACAACGGACCCGTCGAGGCTGCGTTCACTGTCTACTCCGACTTC
CTCTCCTACAAGTCTGGCGTCTACTCCCACACCACCGGCAGCGAGCTCGG
CGGACACGCCATCAAGATCCTCGGATGGGGCTCTGAGAGCGGAACCCCGT
ACTGGCTCGTCGCCAACAGCTGGAACACCGACTGGGGTGCCGAGGGATTC
TTCAAGATCCGCCGCGGCAGCGATGAGTGCGGAATCGAGTCTGGCGTCGT
CGCTGGCAAGTACTAA
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