mRNA_M-pyrifera_M_contig112233.2564.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112233.2564.1
Unique NamemRNA_M-pyrifera_M_contig112233.2564.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112233.2564.1 vs. uniprot
Match: L8GWV7_ACACA (Nuclear helicase, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GWV7_ACACA)

HSP 1 Score: 113 bits (283), Expect = 2.850e-27
Identity = 53/93 (56.99%), Postives = 69/93 (74.19%), Query Frame = 1
Query:    1 QLEDDQLYSNYILSIPLHCAHPAHIVESTTLASARPPPLTYEADLPSCCLDRGDKSTLSSLQLETVRYVGQRHEQTLADNSRAGYFCGDGTGM 279
            Q E+  +Y+ Y   IP+ C HPA+IVE+ TLASA+PP  TY+  LP  C ++G+KS LS+LQ ETV  VGQRHE+ L + +RAGYFCGDGTG+
Sbjct:  420 QSEEAMVYAGYKPQIPIFCTHPANIVEAATLASAQPPEPTYKPKLPPACTEKGEKSLLSTLQYETVVMVGQRHEKMLLNQTRAGYFCGDGTGV 512          
BLAST of mRNA_M-pyrifera_M_contig112233.2564.1 vs. uniprot
Match: A0A6A0GSS1_HYAAZ (Uncharacterized protein n=2 Tax=Hyalella azteca TaxID=294128 RepID=A0A6A0GSS1_HYAAZ)

HSP 1 Score: 76.3 bits (186), Expect = 3.640e-14
Identity = 41/89 (46.07%), Postives = 56/89 (62.92%), Query Frame = 1
Query:   16 QLYSNYILS-IPLHCAHPAHIVESTTLASARPPPLTYEADLPSCCLDRGDKSTLSSLQLETVRYVGQRHEQTLADNSRAGYFCGDGTGM 279
            + Y+ Y LS + +  AHP  +VES ++AS  PP +TY   +P   + +G    LS LQLET+ YVGQ+HE  L D SRAG+  GDG G+
Sbjct:  345 ETYAKYSLSKLKIGRAHPDPVVESASMASVEPPDITYRIKMPEETVMKGK---LSCLQLETITYVGQKHECFLPDGSRAGFLIGDGAGV 430          
BLAST of mRNA_M-pyrifera_M_contig112233.2564.1 vs. uniprot
Match: A0A0F9TJF6_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine sediment metagenome TaxID=412755 RepID=A0A0F9TJF6_9ZZZZ)

HSP 1 Score: 75.5 bits (184), Expect = 6.890e-14
Identity = 40/92 (43.48%), Postives = 54/92 (58.70%), Query Frame = 1
Query:   13 DQLYSNYI---LSIPLHCAHPAHIVESTTLASARPPPLTYEADLPSCCLDRGDKSTLSSLQLETVRYVGQRHEQTLADNSRAGYFCGDGTGM 279
            + LY  Y    + IP    HP  +V+S  +A+  PPP TY  ++PS  +  G    +S +QLE+V Y GQ HE+ L D SR GYF GDGTG+
Sbjct:  833 EDLYEGYRPERVEIPGSQRHPTPLVQSAAMAAVSPPPATYSPNIPSKVIKEG---RISDIQLESVVYSGQSHEEFLEDGSRRGYFIGDGTGV 921          
BLAST of mRNA_M-pyrifera_M_contig112233.2564.1 vs. uniprot
Match: UPI001E67901D (protein strawberry notch homolog 1-like isoform X1 n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E67901D)

HSP 1 Score: 74.3 bits (181), Expect = 1.730e-13
Identity = 38/97 (39.18%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    7 EDDQL-----YSNYI-LSIPLHCAHPAHIVESTTLASARPPPLTYEADLPSCCLDRGDKSTLSSLQLETVRYVGQRHEQTLADNSRAGYFCGDGTGM 279
            EDD +     YS+Y+   + +   HP  +VE+ +++S  PP + Y+ D+P   +D G    LS+LQLE++ Y  Q+HEQ L D +RAG+  GDG G+
Sbjct:  427 EDDDMGIAETYSDYMPTKLKVGIKHPDQVVETASMSSVEPPDVWYDMDIPDSSIDTGK---LSALQLESITYASQQHEQFLPDGTRAGFLIGDGAGV 520          
BLAST of mRNA_M-pyrifera_M_contig112233.2564.1 vs. uniprot
Match: A0A8J5ND44_HOMAM (Strawberry notch 1-like n=16 Tax=Astacidea TaxID=6712 RepID=A0A8J5ND44_HOMAM)

HSP 1 Score: 73.9 bits (180), Expect = 2.380e-13
Identity = 36/89 (40.45%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   16 QLYSNYILS-IPLHCAHPAHIVESTTLASARPPPLTYEADLPSCCLDRGDKSTLSSLQLETVRYVGQRHEQTLADNSRAGYFCGDGTGM 279
            + YS+Y+ S + +   HP  +VE+ +++S  PP + YE ++P   +D G    LS+LQLE++ Y  Q+HEQ L D +RAG+  GDG G+
Sbjct:  625 ETYSDYMPSKLKVGIKHPDQVVETASMSSVEPPDVWYEMEIPDTSIDTGK---LSALQLESITYTSQQHEQFLPDGTRAGFLIGDGAGV 710          
BLAST of mRNA_M-pyrifera_M_contig112233.2564.1 vs. uniprot
Match: A0A0P5TE37_9CRUS (Putative Strawberry notch n=3 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5TE37_9CRUS)

HSP 1 Score: 72.8 bits (177), Expect = 5.940e-13
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   16 QLYSNYI-LSIPLHCAHPAHIVESTTLASARPPPLTYEADLPSCCLDRGDKSTLSSLQLETVRYVGQRHEQTLADNSRAGYFCGDGTGM 279
            + Y++Y+   + +   HP  +VE+ +LAS  PP + Y+  +P   +D G   +LS+LQLE++ Y  Q+HEQTL D SRAGY  GDG G+
Sbjct:  252 ETYADYMPTKVKIGRKHPDPVVETASLASVAPPDVWYKLAIPEESIDSG---SLSALQLESITYSCQQHEQTLPDGSRAGYLIGDGAGV 337          
BLAST of mRNA_M-pyrifera_M_contig112233.2564.1 vs. uniprot
Match: A0A0P5BEC0_9CRUS (Protein strawberry notch n=6 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5BEC0_9CRUS)

HSP 1 Score: 72.8 bits (177), Expect = 6.010e-13
Identity = 38/89 (42.70%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   16 QLYSNYI-LSIPLHCAHPAHIVESTTLASARPPPLTYEADLPSCCLDRGDKSTLSSLQLETVRYVGQRHEQTLADNSRAGYFCGDGTGM 279
            + Y++Y+   + +   HP  +VE+ +LAS  PP + Y+  +P   +D G   +LS+LQLE++ Y  Q+HEQTL D SRAGY  GDG G+
Sbjct:  252 ETYADYMPTKVKIGRKHPDPVVETASLASVAPPDVWYKLAIPEESIDSG---SLSALQLESITYSCQQHEQTLPDGSRAGYLIGDGAGV 337          
BLAST of mRNA_M-pyrifera_M_contig112233.2564.1 vs. uniprot
Match: A0A2P2IC24_9CRUS (Protein strawberry notch homolog 1-like (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2P2IC24_9CRUS)

HSP 1 Score: 72.4 bits (176), Expect = 7.810e-13
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 1
Query:   16 QLYSNYILS-IPLHCAHPAHIVESTTLASARPPPLTYEADLPSCCLDRGDKSTLSSLQLETVRYVGQRHEQTLADNSRAGYFCGDGTGM 279
            + ++NY  S + +   HP  +VES ++AS  PP + Y   LP+  +D G    LS+LQLET+ YVGQ+HE  L D +RAG+  GDG G+
Sbjct:  134 ETFANYKPSKLKIGREHPDLVVESASMASVEPPDVYYRPKLPAQLIDDG---RLSALQLETITYVGQKHECILPDGNRAGFLVGDGAGV 219          
BLAST of mRNA_M-pyrifera_M_contig112233.2564.1 vs. uniprot
Match: A0A6A7FWW7_9CRUS (Protein strawberry notch homolog 1-like (Fragment) n=3 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7FWW7_9CRUS)

HSP 1 Score: 72.4 bits (176), Expect = 8.200e-13
Identity = 39/89 (43.82%), Postives = 56/89 (62.92%), Query Frame = 1
Query:   16 QLYSNYILS-IPLHCAHPAHIVESTTLASARPPPLTYEADLPSCCLDRGDKSTLSSLQLETVRYVGQRHEQTLADNSRAGYFCGDGTGM 279
            + ++NY  S + +   HP  +VES ++AS  PP + Y   LP+  +D G    LS+LQLET+ YVGQ+HE  L D +RAG+  GDG G+
Sbjct:  203 ETFANYKPSKLKIGREHPDLVVESASMASVEPPDVYYRPKLPAQLIDDG---RLSALQLETITYVGQKHECILPDGNRAGFLVGDGAGV 288          
BLAST of mRNA_M-pyrifera_M_contig112233.2564.1 vs. uniprot
Match: A0A6G3MDQ0_HENSL (Protein strawberry notch homolog 1 (Trinotate prediction) (Fragment) n=1 Tax=Henneguya salminicola TaxID=69463 RepID=A0A6G3MDQ0_HENSL)

HSP 1 Score: 70.5 bits (171), Expect = 3.820e-12
Identity = 37/87 (42.53%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   22 YSNYI-LSIPLHCAHPAHIVESTTLASARPPPLTYEADLPSCCLDRGDKSTLSSLQLETVRYVGQRHEQTLADNSRAGYFCGDGTGM 279
            Y +Y+   + +   HP  +VES++L+   PP + Y+  LP+  +++G    LSSLQLE+V Y  Q+HE  L D SRAGY  GDG G+
Sbjct:  127 YDDYVPTKLTIGLKHPDCVVESSSLSVVSPPDVKYQLSLPNSVIEKG---MLSSLQLESVVYACQKHEDFLPDGSRAGYLIGDGPGV 210          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112233.2564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8GWV7_ACACA2.850e-2756.99Nuclear helicase, putative n=1 Tax=Acanthamoeba ca... [more]
A0A6A0GSS1_HYAAZ3.640e-1446.07Uncharacterized protein n=2 Tax=Hyalella azteca Ta... [more]
A0A0F9TJF6_9ZZZZ6.890e-1443.48Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
UPI001E67901D1.730e-1339.18protein strawberry notch homolog 1-like isoform X1... [more]
A0A8J5ND44_HOMAM2.380e-1340.45Strawberry notch 1-like n=16 Tax=Astacidea TaxID=6... [more]
A0A0P5TE37_9CRUS5.940e-1342.70Putative Strawberry notch n=3 Tax=Daphnia magna Ta... [more]
A0A0P5BEC0_9CRUS6.010e-1342.70Protein strawberry notch n=6 Tax=Daphnia magna Tax... [more]
A0A2P2IC24_9CRUS7.810e-1343.82Protein strawberry notch homolog 1-like (Fragment)... [more]
A0A6A7FWW7_9CRUS8.200e-1343.82Protein strawberry notch homolog 1-like (Fragment)... [more]
A0A6G3MDQ0_HENSL3.820e-1242.53Protein strawberry notch homolog 1 (Trinotate pred... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112233contigM-pyrifera_M_contig112233:214..492 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.3e-10
Seed eggNOG ortholog2903.EOD41135
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular response to interleukin-11
EggNOG OGsKOG1513@1,KOG1513@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size279
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.3086674-CDS-M-pyrifera_M_contig112233:213..4921622815636.3086674-CDS-M-pyrifera_M_contig112233:213..492Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112233 214..492 +
1692277498.5820198-CDS-M-pyrifera_M_contig112233:213..4921692277498.5820198-CDS-M-pyrifera_M_contig112233:213..492Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112233 214..492 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112233.2564.1prot_M-pyrifera_M_contig112233.2564.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112233 214..492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112233.2564.1

>prot_M-pyrifera_M_contig112233.2564.1 ID=prot_M-pyrifera_M_contig112233.2564.1|Name=mRNA_M-pyrifera_M_contig112233.2564.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=93bp
QLEDDQLYSNYILSIPLHCAHPAHIVESTTLASARPPPLTYEADLPSCCL
DRGDKSTLSSLQLETVRYVGQRHEQTLADNSRAGYFCGDGTGM
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mRNA from alignment at M-pyrifera_M_contig112233:214..492+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112233.2564.1 ID=mRNA_M-pyrifera_M_contig112233.2564.1|Name=mRNA_M-pyrifera_M_contig112233.2564.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=279bp|location=Sequence derived from alignment at M-pyrifera_M_contig112233:214..492+ (Macrocystis pyrifera P11B4 male)
CAGCTGGAGGACGACCAGCTCTACAGCAACTACATCCTCTCCATCCCTCT GCACTGTGCTCACCCTGCACACATCGTGGAGAGCACCACCCTGGCCTCTG CGCGGCCGCCACCTCTCACCTATGAGGCAGACCTTCCCAGCTGTTGCCTC GACAGGGGCGACAAATCAACATTGAGTTCTCTCCAGCTGGAGACCGTGCG CTACGTTGGCCAGCGCCACGAGCAGACCCTCGCCGACAACAGCCGCGCGG GCTACTTCTGTGGCGACGGCACCGGTATG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112233:214..492+

>mRNA_M-pyrifera_M_contig112233.2564.1 ID=mRNA_M-pyrifera_M_contig112233.2564.1|Name=mRNA_M-pyrifera_M_contig112233.2564.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig112233:214..492+ (Macrocystis pyrifera P11B4 male)
CAGCTGGAGGACGACCAGCTCTACAGCAACTACATCCTCTCCATCCCTCT
GCACTGTGCTCACCCTGCACACATCGTGGAGAGCACCACCCTGGCCTCTG
CGCGGCCGCCACCTCTCACCTATGAGGCAGACCTTCCCAGCTGTTGCCTC
GACAGGGGCGACAAATCAACATTGAGTTCTCTCCAGCTGGAGACCGTGCG
CTACGTTGGCCAGCGCCACGAGCAGACCCTCGCCGACAACAGCCGCGCGG
GCTACTTCTGTGGCGACGGCACCGGTATGCAGCTGGAGGACGACCAGCTC
TACAGCAACTACATCCTCTCCATCCCTCTGCACTGTGCTCACCCTGCACA
CATCGTGGAGAGCACCACCCTGGCCTCTGCGCGGCCGCCACCTCTCACCT
ATGAGGCAGACCTTCCCAGCTGTTGCCTCGACAGGGGCGACAAATCAACA
TTGAGTTCTCTCCAGCTGGAGACCGTGCGCTACGTTGGCCAGCGCCACGA
GCAGACCCTCGCCGACAACAGCCGCGCGGGCTACTTCTGTGGCGACGGCA
CCGGTATG
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