mRNA_M-pyrifera_M_contig112227.2561.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112227.2561.1
Unique NamemRNA_M-pyrifera_M_contig112227.2561.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: A0A4P9W060_9FUNG (Importin subunit alpha n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W060_9FUNG)

HSP 1 Score: 113 bits (282), Expect = 7.900e-27
Identity = 52/107 (48.60%), Postives = 78/107 (72.90%), Query Frame = 1
Query:    1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQIAALMSANIIPPLIVCMSRGNF 321
            ++A++ +G CR++V LLM+ + A++TPA+R VGN++ GD+  TQ+++N G L  LLSL+T    D + KEACW I+NI AG   QI  ++ ANIIPPLI+ + RG+F
Sbjct:  278 IQAVIEAGVCRRLVELLMHQAFAVQTPALRSVGNIVTGDDLQTQVIINCGALGALLSLLTTSPKDGIRKEACWTISNITAGNAAQIQCVIDANIIPPLILILQRGDF 384          
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: A0A2P5E808_TREOI (Importin subunit alpha n=4 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5E808_TREOI)

HSP 1 Score: 101 bits (251), Expect = 1.530e-22
Identity = 50/108 (46.30%), Postives = 72/108 (66.67%), Query Frame = 1
Query:    1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQIAALMSANIIPPLIVCMSRGNFD 324
            ++A++ SG C ++V LLM+ S  +  PA+R VGN++ GD+T TQ V++  VLPCL  L+T     S+ KEACW I+NI AG + QI A++ ANII PL+  +    FD
Sbjct:  282 IQAVIESGVCPRLVELLMHPSPTVLVPALRTVGNIVTGDDTQTQFVIDNQVLPCLFQLLTQNHKKSIKKEACWTISNITAGNRAQIEAVIKANIILPLVHLLQHAEFD 389          
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: A0A2I0XJT3_9ASPA (Importin subunit alpha n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0XJT3_9ASPA)

HSP 1 Score: 99.8 bits (247), Expect = 4.050e-22
Identity = 45/107 (42.06%), Postives = 72/107 (67.29%), Query Frame = 1
Query:    1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQIAALMSANIIPPLIVCMSRGNF 321
            +++++ +G C ++V LL+  S  +  PA+R VGN++ GD++ TQ ++N G LPCL  L+T     S+ KEACWA++NI AG ++QI A++ ANII PL+  +    F
Sbjct:  211 IQSVIEAGVCPRLVELLLYPSTTVVVPALRTVGNIVTGDDSQTQCIINEGALPCLFQLLTQNYKKSIKKEACWAMSNITAGTKHQIQAVIDANIISPLVQLLQHAEF 317          
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: A0A1D1Y806_9ARAE (Importin subunit alpha n=3 Tax=Araceae TaxID=4454 RepID=A0A1D1Y806_9ARAE)

HSP 1 Score: 97.8 bits (242), Expect = 2.580e-21
Identity = 46/108 (42.59%), Postives = 74/108 (68.52%), Query Frame = 1
Query:    1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQIAALMSANIIPPLIVCMSRGNFD 324
            ++A++ +G C ++V LL++ S ++  PA+R VGN++ GD+  TQ ++    LPCLL+L+TH    S+ KEACW I+NI AG + QI A+++A+II PL+  +    FD
Sbjct:  277 IQAVIEAGVCPRLVELLLHPSASVLIPALRTVGNIVTGDDLQTQYIIEHQALPCLLNLLTHNHKKSIKKEACWTISNITAGNKDQIQAVITADIIGPLVHLLQTAEFD 384          
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: A0A803PW75_CANSA (Uncharacterized protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803PW75_CANSA)

HSP 1 Score: 97.4 bits (241), Expect = 4.250e-21
Identity = 48/107 (44.86%), Postives = 71/107 (66.36%), Query Frame = 1
Query:    1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQIAALMSANIIPPLIVCMSRGNF 321
            ++A++ SG C ++V LLM+ S  +  PA+R VGN++ GD++ TQ V++  VLPCL  L+T     S+ KEACW I+NI AG + QI A++ ANII PL+  +    F
Sbjct:  283 IQAVIESGVCPRLVELLMHPSPTVLVPALRTVGNIVTGDDSQTQFVIDNQVLPCLFQLLTQNHKKSIKKEACWTISNITAGNKAQIQAVIEANIILPLVHLLQNAEF 389          
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: A0A2K3L4S5_TRIPR (Importin subunit alpha-1-like protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L4S5_TRIPR)

HSP 1 Score: 90.5 bits (223), Expect = 4.580e-20
Identity = 42/86 (48.84%), Postives = 62/86 (72.09%), Query Frame = 1
Query:    1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQI 258
            ++ I+ +G C ++V LL + S ++  PA+R VGN++ GD+T TQ+++NLGVL CLL L+TH    S+ KEACW I+NI AG + QI
Sbjct:   61 IQEIIEAGLCNRLVQLLQDPSASVLIPALRTVGNIVTGDDTQTQLMINLGVLHCLLRLLTHNHEKSIKKEACWTISNITAGTKEQI 146          
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: A0A2K3PE24_TRIPR (Importin subunit alpha n=4 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PE24_TRIPR)

HSP 1 Score: 93.2 bits (230), Expect = 1.170e-19
Identity = 49/123 (39.84%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQIAALMSANIIPPLIVCMSRGNFDVQQEAAWAISNICTG 369
            V+A+V +  C ++V LL+  +  +  PA++I+G++ +GD+  TQ+++N G L CL  L+T  S   + +E C AI+NI AG   Q+ A++ A++I PL VC+++  F+V+ EA WAISN   G
Sbjct:  324 VQAVVEANVCPRLVELLLFPTSKVIVPALQILGDIASGDDAQTQVLINSGALHCLKFLLTQ-SDKIILEETCLAISNITAGNSAQLQAVLDADLITPL-VCLTKAEFNVRNEAVWAISNATHG 444          
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: A0A8J6CLG2_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CLG2_9ROSI)

HSP 1 Score: 91.7 bits (226), Expect = 4.490e-19
Identity = 49/123 (39.84%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQIAALMSANIIPPLIVCMSRGNFDVQQEAAWAISNICTG 369
            ++A+V +G C ++V LLM+ S ++ T A+  + N++ GD  +TQ V++   LPCL  L+T+   + +   AC  I+NI A  + QI A++ ANII PL+  +   NFD+Q++AA AISN  +G
Sbjct:  855 IQAVVEAGVCGRVVELLMHPSPSVITSALYTIKNIVTGDNVLTQCVISHQALPCLSKLLTNNYENRIKVVACSTISNITARNEEQIQAIIEANIIAPLVHLLQDFNFDIQKQAATAISNATSG 977          
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: A0A314XXJ8_PRUYE (Importin subunit alpha-4 n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314XXJ8_PRUYE)

HSP 1 Score: 89.7 bits (221), Expect = 5.280e-19
Identity = 44/108 (40.74%), Postives = 71/108 (65.74%), Query Frame = 1
Query:    1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQIAALMSANIIPPLIVCMSRGNFD 324
            ++A++ +G C+++V LL + S  +  PA+R VGN++ GD++ TQ +++  VLP L  L+T     S+ KEACW I+NI AG + QI A++ A+II PL+  +    FD
Sbjct:   61 IQAVIEAGVCQRLVELLTHPSPTVLIPALRTVGNIVTGDDSQTQFIIDNQVLPHLHQLLTQNHKKSIKKEACWTISNITAGNKIQIQAVIEADIILPLVQLLQHAEFD 168          
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: UPI001FB0E4E7 (importin subunit alpha-4-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0E4E7)

HSP 1 Score: 90.9 bits (224), Expect = 7.470e-19
Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 1
Query:    1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQIAALMSANIIPPLIVCMSRGNFD 324
            ++ ++ +  C ++V LLM+ S  +  PA+R +GN++ GD++ TQ V+  GVLP L  L+T     S+ KEACW I+NI AG + QI A+  ANII PL+  +    FD
Sbjct:  280 IQTVIEADVCPRLVELLMHPSPTVLVPALRTIGNIVTGDDSQTQFVIENGVLPYLNQLLTQNHKKSIKKEACWTISNITAGNRNQIQAVFEANIILPLVHLLQHAEFD 387          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4P9W060_9FUNG7.900e-2748.60Importin subunit alpha n=1 Tax=Blyttiomyces helicu... [more]
A0A2P5E808_TREOI1.530e-2246.30Importin subunit alpha n=4 Tax=Cannabaceae TaxID=3... [more]
A0A2I0XJT3_9ASPA4.050e-2242.06Importin subunit alpha n=2 Tax=Dendrobium catenatu... [more]
A0A1D1Y806_9ARAE2.580e-2142.59Importin subunit alpha n=3 Tax=Araceae TaxID=4454 ... [more]
A0A803PW75_CANSA4.250e-2144.86Uncharacterized protein n=1 Tax=Cannabis sativa Ta... [more]
A0A2K3L4S5_TRIPR4.580e-2048.84Importin subunit alpha-1-like protein n=1 Tax=Trif... [more]
A0A2K3PE24_TRIPR1.170e-1939.84Importin subunit alpha n=4 Tax=Trifolium pratense ... [more]
A0A8J6CLG2_9ROSI4.490e-1939.84Uncharacterized protein n=1 Tax=Gossypium anomalum... [more]
A0A314XXJ8_PRUYE5.280e-1940.74Importin subunit alpha-4 n=1 Tax=Prunus yedoensis ... [more]
UPI001FB0E4E77.470e-1941.67importin subunit alpha-4-like n=1 Tax=Impatiens gl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112227contigM-pyrifera_M_contig112227:148..569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score112.8
Seed ortholog evalue1.1e-22
Seed eggNOG ortholog4537.OPUNC01G14070.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope
EggNOG OGs37HJI@33090,3GAGW@35493,3KURU@4447,COG5064@1,KOG0166@2759
COG Functional cat.U
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
Exons2
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.1842434-CDS-M-pyrifera_M_contig112227:147..2131622815636.1842434-CDS-M-pyrifera_M_contig112227:147..213Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112227 148..213 +
1692277498.5124853-CDS-M-pyrifera_M_contig112227:147..2131692277498.5124853-CDS-M-pyrifera_M_contig112227:147..213Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112227 148..213 +
1622815636.1963918-CDS-M-pyrifera_M_contig112227:266..5691622815636.1963918-CDS-M-pyrifera_M_contig112227:266..569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112227 267..569 +
1692277498.533374-CDS-M-pyrifera_M_contig112227:266..5691692277498.533374-CDS-M-pyrifera_M_contig112227:266..569Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112227 267..569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112227.2561.1prot_M-pyrifera_M_contig112227.2561.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112227 148..569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112227.2561.1

>prot_M-pyrifera_M_contig112227.2561.1 ID=prot_M-pyrifera_M_contig112227.2561.1|Name=mRNA_M-pyrifera_M_contig112227.2561.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp
VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLG
VLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQIAALMSANIIPPLIV
CMSRGNFDVQQEAAWAISNICTG
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mRNA from alignment at M-pyrifera_M_contig112227:148..569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112227.2561.1 ID=mRNA_M-pyrifera_M_contig112227.2561.1|Name=mRNA_M-pyrifera_M_contig112227.2561.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=422bp|location=Sequence derived from alignment at M-pyrifera_M_contig112227:148..569+ (Macrocystis pyrifera P11B4 male)
GTGGAGGCGATTGTACATAGCGGCGCATGCCGCAAGATAGTTCACCTCCT GATGAACAACTCTCTGGTGGGATGTCCCTCTGCTGCAGCGTCTACCAAAA CTGGCGCTGACCTGTGTAGGCGATCAAAACGCCAGCCGTGCGGATTGTGG GAAACCTCCTGGCGGGCGACGAGACGATGACGCAGATTGTGATGAACCTG GGCGTGCTGCCATGTCTGCTGTCGCTCATCACACACTTCAGCTACGACTC GGTGTGCAAGGAGGCCTGCTGGGCCATCGCCAACATCGCGGCTGGCGCAC AGTACCAGATCGCGGCCTTAATGTCCGCCAACATCATCCCGCCCCTCATA GTGTGCATGAGCAGGGGCAACTTCGACGTCCAGCAGGAGGCGGCCTGGGC CATCTCCAACATCTGCACGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112227:148..569+

>mRNA_M-pyrifera_M_contig112227.2561.1 ID=mRNA_M-pyrifera_M_contig112227.2561.1|Name=mRNA_M-pyrifera_M_contig112227.2561.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig112227:148..569+ (Macrocystis pyrifera P11B4 male)
GTGGAGGCGATTGTACATAGCGGCGCATGCCGCAAGATAGTTCACCTCCT
GATGAACAACTCTCTGGTGGAGGCGATTGTACATAGCGGCGCATGCCGCA
AGATAGTTCACCTCCTGATGAACAACTCTCTGGCGATCAAAACGCCAGCC
GTGCGGATTGTGGGAAACCTCCTGGCGGGCGACGAGACGATGACGCAGAT
TGTGATGAACCTGGGCGTGCTGCCATGTCTGCTGTCGCTCATCACACACT
TCAGCTACGACTCGGTGTGCAAGGAGGCCTGCTGGGCCATCGCCAACATC
GCGGCTGGCGCACAGTACCAGATCGCGGCCTTAATGTCCGCCAACATCAT
CCCGCCCCTCATAGTGTGCATGAGCAGGGGCAACTTCGACGTCCAGCAGG
AGGCGGCCTGGGCCATCTCCAACATCTGCACGGGCGCGATCAAAACGCCA
GCCGTGCGGATTGTGGGAAACCTCCTGGCGGGCGACGAGACGATGACGCA
GATTGTGATGAACCTGGGCGTGCTGCCATGTCTGCTGTCGCTCATCACAC
ACTTCAGCTACGACTCGGTGTGCAAGGAGGCCTGCTGGGCCATCGCCAAC
ATCGCGGCTGGCGCACAGTACCAGATCGCGGCCTTAATGTCCGCCAACAT
CATCCCGCCCCTCATAGTGTGCATGAGCAGGGGCAACTTCGACGTCCAGC
AGGAGGCGGCCTGGGCCATCTCCAACATCTGCACGGGC
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