mRNA_M-pyrifera_M_contig112227.2561.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: A0A4P9W060_9FUNG (Importin subunit alpha n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W060_9FUNG) HSP 1 Score: 113 bits (282), Expect = 7.900e-27 Identity = 52/107 (48.60%), Postives = 78/107 (72.90%), Query Frame = 1
Query: 1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQIAALMSANIIPPLIVCMSRGNF 321
++A++ +G CR++V LLM+ + A++TPA+R VGN++ GD+ TQ+++N G L LLSL+T D + KEACW I+NI AG QI ++ ANIIPPLI+ + RG+F
Sbjct: 278 IQAVIEAGVCRRLVELLMHQAFAVQTPALRSVGNIVTGDDLQTQVIINCGALGALLSLLTTSPKDGIRKEACWTISNITAGNAAQIQCVIDANIIPPLILILQRGDF 384
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: A0A2P5E808_TREOI (Importin subunit alpha n=4 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5E808_TREOI) HSP 1 Score: 101 bits (251), Expect = 1.530e-22 Identity = 50/108 (46.30%), Postives = 72/108 (66.67%), Query Frame = 1
Query: 1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQIAALMSANIIPPLIVCMSRGNFD 324
++A++ SG C ++V LLM+ S + PA+R VGN++ GD+T TQ V++ VLPCL L+T S+ KEACW I+NI AG + QI A++ ANII PL+ + FD
Sbjct: 282 IQAVIESGVCPRLVELLMHPSPTVLVPALRTVGNIVTGDDTQTQFVIDNQVLPCLFQLLTQNHKKSIKKEACWTISNITAGNRAQIEAVIKANIILPLVHLLQHAEFD 389
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: A0A2I0XJT3_9ASPA (Importin subunit alpha n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0XJT3_9ASPA) HSP 1 Score: 99.8 bits (247), Expect = 4.050e-22 Identity = 45/107 (42.06%), Postives = 72/107 (67.29%), Query Frame = 1
Query: 1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQIAALMSANIIPPLIVCMSRGNF 321
+++++ +G C ++V LL+ S + PA+R VGN++ GD++ TQ ++N G LPCL L+T S+ KEACWA++NI AG ++QI A++ ANII PL+ + F
Sbjct: 211 IQSVIEAGVCPRLVELLLYPSTTVVVPALRTVGNIVTGDDSQTQCIINEGALPCLFQLLTQNYKKSIKKEACWAMSNITAGTKHQIQAVIDANIISPLVQLLQHAEF 317
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: A0A1D1Y806_9ARAE (Importin subunit alpha n=3 Tax=Araceae TaxID=4454 RepID=A0A1D1Y806_9ARAE) HSP 1 Score: 97.8 bits (242), Expect = 2.580e-21 Identity = 46/108 (42.59%), Postives = 74/108 (68.52%), Query Frame = 1
Query: 1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQIAALMSANIIPPLIVCMSRGNFD 324
++A++ +G C ++V LL++ S ++ PA+R VGN++ GD+ TQ ++ LPCLL+L+TH S+ KEACW I+NI AG + QI A+++A+II PL+ + FD
Sbjct: 277 IQAVIEAGVCPRLVELLLHPSASVLIPALRTVGNIVTGDDLQTQYIIEHQALPCLLNLLTHNHKKSIKKEACWTISNITAGNKDQIQAVITADIIGPLVHLLQTAEFD 384
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: A0A803PW75_CANSA (Uncharacterized protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803PW75_CANSA) HSP 1 Score: 97.4 bits (241), Expect = 4.250e-21 Identity = 48/107 (44.86%), Postives = 71/107 (66.36%), Query Frame = 1
Query: 1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQIAALMSANIIPPLIVCMSRGNF 321
++A++ SG C ++V LLM+ S + PA+R VGN++ GD++ TQ V++ VLPCL L+T S+ KEACW I+NI AG + QI A++ ANII PL+ + F
Sbjct: 283 IQAVIESGVCPRLVELLMHPSPTVLVPALRTVGNIVTGDDSQTQFVIDNQVLPCLFQLLTQNHKKSIKKEACWTISNITAGNKAQIQAVIEANIILPLVHLLQNAEF 389
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: A0A2K3L4S5_TRIPR (Importin subunit alpha-1-like protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L4S5_TRIPR) HSP 1 Score: 90.5 bits (223), Expect = 4.580e-20 Identity = 42/86 (48.84%), Postives = 62/86 (72.09%), Query Frame = 1
Query: 1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQI 258
++ I+ +G C ++V LL + S ++ PA+R VGN++ GD+T TQ+++NLGVL CLL L+TH S+ KEACW I+NI AG + QI
Sbjct: 61 IQEIIEAGLCNRLVQLLQDPSASVLIPALRTVGNIVTGDDTQTQLMINLGVLHCLLRLLTHNHEKSIKKEACWTISNITAGTKEQI 146
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: A0A2K3PE24_TRIPR (Importin subunit alpha n=4 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PE24_TRIPR) HSP 1 Score: 93.2 bits (230), Expect = 1.170e-19 Identity = 49/123 (39.84%), Postives = 81/123 (65.85%), Query Frame = 1
Query: 1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQIAALMSANIIPPLIVCMSRGNFDVQQEAAWAISNICTG 369
V+A+V + C ++V LL+ + + PA++I+G++ +GD+ TQ+++N G L CL L+T S + +E C AI+NI AG Q+ A++ A++I PL VC+++ F+V+ EA WAISN G
Sbjct: 324 VQAVVEANVCPRLVELLLFPTSKVIVPALQILGDIASGDDAQTQVLINSGALHCLKFLLTQ-SDKIILEETCLAISNITAGNSAQLQAVLDADLITPL-VCLTKAEFNVRNEAVWAISNATHG 444
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: A0A8J6CLG2_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CLG2_9ROSI) HSP 1 Score: 91.7 bits (226), Expect = 4.490e-19 Identity = 49/123 (39.84%), Postives = 79/123 (64.23%), Query Frame = 1
Query: 1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQIAALMSANIIPPLIVCMSRGNFDVQQEAAWAISNICTG 369
++A+V +G C ++V LLM+ S ++ T A+ + N++ GD +TQ V++ LPCL L+T+ + + AC I+NI A + QI A++ ANII PL+ + NFD+Q++AA AISN +G
Sbjct: 855 IQAVVEAGVCGRVVELLMHPSPSVITSALYTIKNIVTGDNVLTQCVISHQALPCLSKLLTNNYENRIKVVACSTISNITARNEEQIQAIIEANIIAPLVHLLQDFNFDIQKQAATAISNATSG 977
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: A0A314XXJ8_PRUYE (Importin subunit alpha-4 n=1 Tax=Prunus yedoensis var. nudiflora TaxID=2094558 RepID=A0A314XXJ8_PRUYE) HSP 1 Score: 89.7 bits (221), Expect = 5.280e-19 Identity = 44/108 (40.74%), Postives = 71/108 (65.74%), Query Frame = 1
Query: 1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQIAALMSANIIPPLIVCMSRGNFD 324
++A++ +G C+++V LL + S + PA+R VGN++ GD++ TQ +++ VLP L L+T S+ KEACW I+NI AG + QI A++ A+II PL+ + FD
Sbjct: 61 IQAVIEAGVCQRLVELLTHPSPTVLIPALRTVGNIVTGDDSQTQFIIDNQVLPHLHQLLTQNHKKSIKKEACWTISNITAGNKIQIQAVIEADIILPLVQLLQHAEFD 168
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Match: UPI001FB0E4E7 (importin subunit alpha-4-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB0E4E7) HSP 1 Score: 90.9 bits (224), Expect = 7.470e-19 Identity = 45/108 (41.67%), Postives = 68/108 (62.96%), Query Frame = 1
Query: 1 VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGVLPCLLSLITHFSYDSVCKEACWAIANIAAGAQYQIAALMSANIIPPLIVCMSRGNFD 324
++ ++ + C ++V LLM+ S + PA+R +GN++ GD++ TQ V+ GVLP L L+T S+ KEACW I+NI AG + QI A+ ANII PL+ + FD
Sbjct: 280 IQTVIEADVCPRLVELLMHPSPTVLVPALRTIGNIVTGDDSQTQFVIENGVLPYLNQLLTQNHKKSIKKEACWTISNITAGNRNQIQAVFEANIILPLVHLLQHAEFD 387 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112227.2561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig112227.2561.1 >prot_M-pyrifera_M_contig112227.2561.1 ID=prot_M-pyrifera_M_contig112227.2561.1|Name=mRNA_M-pyrifera_M_contig112227.2561.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=123bp VEAIVHSGACRKIVHLLMNNSLAIKTPAVRIVGNLLAGDETMTQIVMNLGback to top mRNA from alignment at M-pyrifera_M_contig112227:148..569+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig112227.2561.1 ID=mRNA_M-pyrifera_M_contig112227.2561.1|Name=mRNA_M-pyrifera_M_contig112227.2561.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=422bp|location=Sequence derived from alignment at M-pyrifera_M_contig112227:148..569+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig112227:148..569+ >mRNA_M-pyrifera_M_contig112227.2561.1 ID=mRNA_M-pyrifera_M_contig112227.2561.1|Name=mRNA_M-pyrifera_M_contig112227.2561.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=738bp|location=Sequence derived from alignment at M-pyrifera_M_contig112227:148..569+ (Macrocystis pyrifera P11B4 male)back to top |