mRNA_M-pyrifera_M_contig112141.2555.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112141.2555.1
Unique NamemRNA_M-pyrifera_M_contig112141.2555.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112141.2555.1 vs. uniprot
Match: A0A7Y2F8W1_9BACT (Aldose 1-epimerase n=1 Tax=Pirellulaceae bacterium TaxID=2699754 RepID=A0A7Y2F8W1_9BACT)

HSP 1 Score: 274 bits (700), Expect = 1.080e-88
Identity = 131/193 (67.88%), Postives = 155/193 (80.31%), Query Frame = 1
Query:    1 AKIMTRGATLVELHVPDKDGKIEDVILGFDDVAGYESDANQYFGCTTGRVCNRIDSGQFTLDGKIYSLAKNDGEKHHLHGGADRSLDKVIWNAKPFEDNRTNGVIFTYTSPDGEEGYPGNLSISVTYRVQKMMNVLEIHYEATTDQPTPINLTNHMYLNLAGAGTDSVLDHVLKIPAIQYTVTDEELIPTGEI 579
            AK+MTRGATLV+LHVPD DG + DV+LGFDDV+GYESD NQYFGCTTGRVCNRI  G+FTLDGK YSLA N+ E +HLHGG +RSLDKVIW A+PFE+++ +GV F+Y SPDGEEGYPGNL ++V Y V K  + L I Y ATTDQ TP+NLTNH Y NL G G+ +VLDH LK+ A  +T  D+ LIPTGEI
Sbjct:   49 AKVMTRGATLVQLHVPDADGNMADVVLGFDDVSGYESDDNQYFGCTTGRVCNRIAKGKFTLDGKEYSLAINN-EPNHLHGGVERSLDKVIWKARPFENDKGSGVAFSYKSPDGEEGYPGNLDVTVRYFVPKEGHRLSISYTATTDQATPVNLTNHAYFNLGGEGSKTVLDHTLKLNADTFTPVDDTLIPTGEI 240          
BLAST of mRNA_M-pyrifera_M_contig112141.2555.1 vs. uniprot
Match: A0A7C7X4D2_9PLAN (Aldose 1-epimerase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A7C7X4D2_9PLAN)

HSP 1 Score: 273 bits (697), Expect = 3.560e-88
Identity = 132/195 (67.69%), Postives = 157/195 (80.51%), Query Frame = 1
Query:    1 AKIMTRGATLVELHVPDKDGKIEDVILGFDDVAGYESDANQYFGCTTGRVCNRIDSGQFTLDGKIYSLAKNDGEKHHLHGGADRSLDKVIWNAKPFEDNRTNGVIFTYTSPDGEEGYPGNLSISVTYRVQKMMNVLEIHYEATTDQPTPINLTNHMYLNLAGAGTDSVLDHVLKIPAIQYTVTDEELIPTGEIAS 585
            AKIMTRGATLV+LHVPDKDG   DVI GFD V GYES+ NQYFGCTTGRVCNRI  G+FTLDGK ++LA N+ E +HLHGG++RSLDKVIW A+PF + R +GV F+YTSPDGEEGYPG L ++V + V K  N L I Y ATTD+ TP+NLTNH Y NLAGAG+D+VLDH L++ A +YT TD+ LIPTG+I S
Sbjct:   55 AKIMTRGATLVQLHVPDKDGNSADVINGFDSVTGYESEDNQYFGCTTGRVCNRIAKGKFTLDGKEHTLAINN-EPNHLHGGSERSLDKVIWKARPFSNERGSGVRFSYTSPDGEEGYPGKLDVTVVFSVPKDANRLLISYRATTDKATPVNLTNHAYFNLAGAGSDTVLDHALRLNADKYTPTDDTLIPTGKIES 248          
BLAST of mRNA_M-pyrifera_M_contig112141.2555.1 vs. uniprot
Match: A0A3B9CT42_9PLAN (Aldose 1-epimerase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A3B9CT42_9PLAN)

HSP 1 Score: 272 bits (695), Expect = 6.920e-88
Identity = 130/195 (66.67%), Postives = 156/195 (80.00%), Query Frame = 1
Query:    1 AKIMTRGATLVELHVPDKDGKIEDVILGFDDVAGYESDANQYFGCTTGRVCNRIDSGQFTLDGKIYSLAKNDGEKHHLHGGADRSLDKVIWNAKPFEDNRTNGVIFTYTSPDGEEGYPGNLSISVTYRVQKMMNVLEIHYEATTDQPTPINLTNHMYLNLAGAGTDSVLDHVLKIPAIQYTVTDEELIPTGEIAS 585
            AKIMTRGATLVELH PDKDGK  D+ILG+DDVAGYES+ NQYFGCTTGRVCNRI  G+FTLDG+ Y+LA N+ + +HLHGGA+RSLDKV+W A PF +    G+ F YTSPDGEEGYPG L +SV+Y +    N L I+Y+ATTD+ TP+NLTNH Y NL GAG+D+VL+H LK+ A  YT TD+ LIPTG+I S
Sbjct:   48 AKIMTRGATLVELHAPDKDGKSADIILGWDDVAGYESEDNQYFGCTTGRVCNRIAKGKFTLDGEEYTLATNN-DPNHLHGGAERSLDKVVWKATPFTNKFGQGIRFNYTSPDGEEGYPGKLKVSVSYVLANSANRLTINYKATTDKATPVNLTNHAYFNLGGAGSDTVLNHQLKLNADNYTPTDDTLIPTGKIES 241          
BLAST of mRNA_M-pyrifera_M_contig112141.2555.1 vs. uniprot
Match: A0A1P8WA82_9PLAN (Aldose 1-epimerase n=1 Tax=Fuerstiella marisgermanici TaxID=1891926 RepID=A0A1P8WA82_9PLAN)

HSP 1 Score: 270 bits (690), Expect = 3.290e-87
Identity = 128/193 (66.32%), Postives = 155/193 (80.31%), Query Frame = 1
Query:    1 AKIMTRGATLVELHVPDKDGKIEDVILGFDDVAGYESDANQYFGCTTGRVCNRIDSGQFTLDGKIYSLAKNDGEKHHLHGGADRSLDKVIWNAKPFEDNRTNGVIFTYTSPDGEEGYPGNLSISVTYRVQKMMNVLEIHYEATTDQPTPINLTNHMYLNLAGAGTDSVLDHVLKIPAIQYTVTDEELIPTGEI 579
            AK+M RGATLVELHVP K+GK EDVILG+D VAGYES+ NQYFGCTTGRVCNRI  G+F++ GK Y++A NDG  +HLHGG +RSLDKV+W+AK + +++  GV F YTSPDGEEGYPGNL   V Y + K  N + I Y+ATTDQPTP+NLTNH Y NLAGAG+D+VLDHVL + A +YT  D+ LIPTG+I
Sbjct:   48 AKVMARGATLVELHVPGKNGKSEDVILGWDSVAGYESEDNQYFGCTTGRVCNRIAKGKFSIGGKDYTVATNDGP-NHLHGGVERSLDKVVWDAKAYSNDKGQGVRFKYTSPDGEEGYPGNLKCQVVYFLAKNANRISISYKATTDQPTPVNLTNHAYFNLAGAGSDTVLDHVLTLNADKYTPADDTLIPTGKI 239          
BLAST of mRNA_M-pyrifera_M_contig112141.2555.1 vs. uniprot
Match: A0A353B9A6_9PLAN (Aldose 1-epimerase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A353B9A6_9PLAN)

HSP 1 Score: 268 bits (685), Expect = 2.940e-86
Identity = 127/195 (65.13%), Postives = 158/195 (81.03%), Query Frame = 1
Query:    1 AKIMTRGATLVELHVPDKDGKIEDVILGFDDVAGYESDANQYFGCTTGRVCNRIDSGQFTLDGKIYSLAKNDGEKHHLHGGADRSLDKVIWNAKPFEDNRTNGVIFTYTSPDGEEGYPGNLSISVTYRVQKMMNVLEIHYEATTDQPTPINLTNHMYLNLAGAGTDSVLDHVLKIPAIQYTVTDEELIPTGEIAS 585
            AK+MTRGATLVELHVPD+DG++ DV+ GFDDVAGYES  N YFGCT GRV NRI  G+FTLDGK YSLA N+ E +HLHGG +RSLDKV+W+AKP ++    GV F+YTSPDGEEGYPG L+++VTY + K  NVL+I Y A+TD+ TPINLTNH Y NL+G G++++ +HVL++ A +YT  D+ LIPTGEIAS
Sbjct:   51 AKVMTRGATLVELHVPDRDGQLADVVFGFDDVAGYESADNAYFGCTAGRVANRIARGKFTLDGKEYSLAINN-EPNHLHGGVERSLDKVVWDAKPLDNKYGRGVRFSYTSPDGEEGYPGTLTVTVTYILPKKRNVLDIRYTASTDKATPINLTNHAYFNLSGHGSETIHEHVLRLNADKYTPVDDTLIPTGEIAS 244          
BLAST of mRNA_M-pyrifera_M_contig112141.2555.1 vs. uniprot
Match: A0A3M1MTB3_9BACT (Aldose 1-epimerase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M1MTB3_9BACT)

HSP 1 Score: 268 bits (684), Expect = 3.480e-86
Identity = 126/195 (64.62%), Postives = 158/195 (81.03%), Query Frame = 1
Query:    1 AKIMTRGATLVELHVPDKDGKIEDVILGFDDVAGYESDANQYFGCTTGRVCNRIDSGQFTLDGKIYSLAKNDGEKHHLHGGADRSLDKVIWNAKPFEDNRTNGVIFTYTSPDGEEGYPGNLSISVTYRVQKMMNVLEIHYEATTDQPTPINLTNHMYLNLAGAGTDSVLDHVLKIPAIQYTVTDEELIPTGEIAS 585
            AK+MTRGATLV+LHVPD+ G++ DVILGFDDV+GYES+ANQYFGCT GRVCNRI  G+FTL+G+ Y LA N+G  +HLHGG +RSLDKV+W A+ +E+++  GV F+YTSPDGEEGYPGNL++  TY + +  N L + Y ATTD+ TP+NLTNH Y NLAG G+ SVL+H L+I A +YT  D+ LIPTGEIAS
Sbjct:   52 AKVMTRGATLVQLHVPDRQGRMADVILGFDDVSGYESEANQYFGCTVGRVCNRIAKGRFTLNGQEYVLAVNNGP-NHLHGGVERSLDKVVWEARAYENDQGQGVTFSYTSPDGEEGYPGNLTVKATYFLPRDKNNLVLRYSATTDKATPVNLTNHAYFNLAGHGSPSVLEHRLRINADRYTPVDDTLIPTGEIAS 245          
BLAST of mRNA_M-pyrifera_M_contig112141.2555.1 vs. uniprot
Match: A0A5C6B587_9BACT (Aldose 1-epimerase n=1 Tax=Stieleria varia TaxID=2528005 RepID=A0A5C6B587_9BACT)

HSP 1 Score: 266 bits (680), Expect = 1.140e-85
Identity = 128/193 (66.32%), Postives = 152/193 (78.76%), Query Frame = 1
Query:    1 AKIMTRGATLVELHVPDKDGKIEDVILGFDDVAGYESDANQYFGCTTGRVCNRIDSGQFTLDGKIYSLAKNDGEKHHLHGGADRSLDKVIWNAKPFEDNRTNGVIFTYTSPDGEEGYPGNLSISVTYRVQKMMNVLEIHYEATTDQPTPINLTNHMYLNLAGAGTDSVLDHVLKIPAIQYTVTDEELIPTGEI 579
            AKIMTRGATLV+LHVPD DGK  DVI GFDDVAGYES+ NQYFGCTTGRVCNRI  G+F+LDGK Y+LA N+ E +HLHGG +RSLDKV+W AKPF + +  GV F+YTSPDGEEGYPGNL ++V + V    N + I Y A TD+ TP+NLTNH Y NL GAG+++VL+H L + A QYT  D+ LIPTGEI
Sbjct:   55 AKIMTRGATLVQLHVPDSDGKSADVIFGFDDVAGYESEDNQYFGCTTGRVCNRIAKGKFSLDGKDYTLAINN-EPNHLHGGVERSLDKVVWKAKPFANEKGTGVTFSYTSPDGEEGYPGNLDVTVRFFVPTDANRVSITYTAKTDKATPVNLTNHAYFNLGGAGSETVLNHKLMLNAPQYTPVDDTLIPTGEI 246          
BLAST of mRNA_M-pyrifera_M_contig112141.2555.1 vs. uniprot
Match: A0A517NTM4_9BACT (Aldose 1-epimerase n=1 Tax=Planctomycetes bacterium K23_9 TaxID=1930275 RepID=A0A517NTM4_9BACT)

HSP 1 Score: 266 bits (680), Expect = 1.440e-85
Identity = 128/193 (66.32%), Postives = 155/193 (80.31%), Query Frame = 1
Query:    1 AKIMTRGATLVELHVPDKDGKIEDVILGFDDVAGYESDANQYFGCTTGRVCNRIDSGQFTLDGKIYSLAKNDGEKHHLHGGADRSLDKVIWNAKPFEDNRTNGVIFTYTSPDGEEGYPGNLSISVTYRVQKMMNVLEIHYEATTDQPTPINLTNHMYLNLAGAGTDSVLDHVLKIPAIQYTVTDEELIPTGEI 579
            AK+MTRGATLV L VPDK+G + DV+LGFDDV+GYESD NQYFGCT GRVCNRI  G+FTLDGK YSLA N+ E +HLHGG +RSLDKV+W+AKPF +++ +GV F+YTSPDGEEGYPGNL  +V Y V    + L I Y ATTD+ TP+NLTNH Y NL+G G+++VLDHVL I A ++T  D+ LIPTGEI
Sbjct:   49 AKVMTRGATLVGLDVPDKEGDMADVLLGFDDVSGYESDDNQYFGCTAGRVCNRIAKGKFTLDGKEYSLAINN-EPNHLHGGVERSLDKVVWDAKPFSNDKGSGVTFSYTSPDGEEGYPGNLKATVRYFVAAKGHRLSISYSATTDKATPVNLTNHAYFNLSGEGSETVLDHVLMINADRFTPVDDTLIPTGEI 240          
BLAST of mRNA_M-pyrifera_M_contig112141.2555.1 vs. uniprot
Match: A0A3L7RIT8_9BACT (Aldose 1-epimerase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7RIT8_9BACT)

HSP 1 Score: 264 bits (674), Expect = 9.740e-85
Identity = 126/194 (64.95%), Postives = 153/194 (78.87%), Query Frame = 1
Query:    1 AKIMTRGATLVELHVPDKDGKIEDVILGFDDVAGYESDANQYFGCTTGRVCNRIDSGQFTLDGKIYSLAKNDGEKHHLHGGADRSLDKVIWNAKPFEDNRTNGVIFTYTSPDGEEGYPGNLSISVTYRVQKMMNVLEIHYEATTDQPTPINLTNHMYLNLAGAGTDSVLDHVLKIPAIQYTVTDEELIPTGEIA 582
            AK+MTRGATLV+LHVPDKDGK  DVILGFDDV GYES+ NQYFGCTTGRVCNRI  G+F L+GK Y+LA N+ E +HLHGG D+SLDK++W A P+   +  GV FT TSPDG+EGYPG L I+V+Y V    N + I Y ATTD+ TP+NLTNH Y NLAG G+++VL+H L+I A  YTV+D+ +IPTGEIA
Sbjct:   49 AKVMTRGATLVQLHVPDKDGKAADVILGFDDVTGYESEDNQYFGCTTGRVCNRIAKGKFLLEGKEYTLAINN-EPNHLHGGLDKSLDKLVWKALPYSGEKGQGVKFTATSPDGDEGYPGTLEITVSYFVANDTNSISISYTATTDKATPVNLTNHAYFNLAGEGSETVLNHSLRINADNYTVSDDTMIPTGEIA 241          
BLAST of mRNA_M-pyrifera_M_contig112141.2555.1 vs. uniprot
Match: A0A517Z1X2_9PLAN (Aldose 1-epimerase n=1 Tax=Maioricimonas rarisocia TaxID=2528026 RepID=A0A517Z1X2_9PLAN)

HSP 1 Score: 261 bits (667), Expect = 1.080e-83
Identity = 128/195 (65.64%), Postives = 155/195 (79.49%), Query Frame = 1
Query:    1 AKIMTRGATLVELHVPDKDGKIEDVILGFDDVAGYESDANQYFGCTTGRVCNRIDSGQFTLDGKIYSLAKNDGEKHHLHGGADRSLDKVIWNAKPFEDNRTNGVIFTYTSPDGEEGYPGNLSISVTYRVQKMMNVLEIHYEATTDQPTPINLTNHMYLNLAGAGTDSVLDHVLKIPAIQYTVTDEELIPTGEIAS 585
            AK+MTRGATL ELHVPDK+G + DV+LGFD VAGYES+ANQYFGCTTGRV NRI  G+FTLDG+ Y+LA N+ E +HLHGG +RSLDKV+W+AK  +    +GV FTY SPDGEEGYPG L ++VTY +    N L I Y A+TD+ TP+NLTNH Y NLAG G+D+VLDH LKI A +YT TD+ LIPTGE+A+
Sbjct:   58 AKLMTRGATLTELHVPDKEGNVADVVLGFDSVAGYESEANQYFGCTTGRVANRIAEGKFTLDGEEYTLAINN-EPNHLHGGTERSLDKVVWDAKTVKTKFGDGVRFTYVSPDGEEGYPGKLRVTVTYTLSDD-NDLRISYTASTDKATPVNLTNHSYFNLAGHGSDTVLDHRLKINADKYTPTDDTLIPTGELAA 250          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112141.2555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Y2F8W1_9BACT1.080e-8867.88Aldose 1-epimerase n=1 Tax=Pirellulaceae bacterium... [more]
A0A7C7X4D2_9PLAN3.560e-8867.69Aldose 1-epimerase n=1 Tax=Planctomycetaceae bacte... [more]
A0A3B9CT42_9PLAN6.920e-8866.67Aldose 1-epimerase n=1 Tax=Planctomycetaceae bacte... [more]
A0A1P8WA82_9PLAN3.290e-8766.32Aldose 1-epimerase n=1 Tax=Fuerstiella marisgerman... [more]
A0A353B9A6_9PLAN2.940e-8665.13Aldose 1-epimerase n=1 Tax=Planctomycetaceae bacte... [more]
A0A3M1MTB3_9BACT3.480e-8664.62Aldose 1-epimerase n=1 Tax=Planctomycetes bacteriu... [more]
A0A5C6B587_9BACT1.140e-8566.32Aldose 1-epimerase n=1 Tax=Stieleria varia TaxID=2... [more]
A0A517NTM4_9BACT1.440e-8566.32Aldose 1-epimerase n=1 Tax=Planctomycetes bacteriu... [more]
A0A3L7RIT8_9BACT9.740e-8564.95Aldose 1-epimerase n=1 Tax=Planctomycetes bacteriu... [more]
A0A517Z1X2_9PLAN1.080e-8365.64Aldose 1-epimerase n=1 Tax=Maioricimonas rarisocia... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112141contigM-pyrifera_M_contig112141:2..586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score199.5
Seed ortholog evalue1.4e-48
Seed eggNOG ortholog1121943.KB899989_gene3288
Preferred namemro
KEGG rclassRC00563
KEGG koko:K01785
KEGG ReactionR01602,R10619
KEGG Pathwayko00010,ko00052,ko01100,ko01110,ko01120,ko01130,map00010,map00052,map01100,map01110,map01120,map01130
KEGG ModuleM00632
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Converts alpha-aldose to the beta-anomer
EggNOG OGs1MVMN@1224,1RNZN@1236,1XJKW@135619,COG2017@1,COG2017@2
EC5.1.3.3
COG Functional cat.G
Best tax levelOceanospirillales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size585
Cds size576
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.5179703-UTR-M-pyrifera_M_contig112141:1..101622815635.5179703-UTR-M-pyrifera_M_contig112141:1..10Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112141 2..10 +
1692277498.121698-UTR-M-pyrifera_M_contig112141:1..101692277498.121698-UTR-M-pyrifera_M_contig112141:1..10Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112141 2..10 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.5309687-CDS-M-pyrifera_M_contig112141:10..5861622815635.5309687-CDS-M-pyrifera_M_contig112141:10..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112141 11..586 +
1692277498.1367013-CDS-M-pyrifera_M_contig112141:10..5861692277498.1367013-CDS-M-pyrifera_M_contig112141:10..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112141 11..586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112141.2555.1prot_M-pyrifera_M_contig112141.2555.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112141 11..586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112141.2555.1

>prot_M-pyrifera_M_contig112141.2555.1 ID=prot_M-pyrifera_M_contig112141.2555.1|Name=mRNA_M-pyrifera_M_contig112141.2555.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=192bp
MTRGATLVELHVPDKDGKIEDVILGFDDVAGYESDANQYFGCTTGRVCNR
IDSGQFTLDGKIYSLAKNDGEKHHLHGGADRSLDKVIWNAKPFEDNRTNG
VIFTYTSPDGEEGYPGNLSISVTYRVQKMMNVLEIHYEATTDQPTPINLT
NHMYLNLAGAGTDSVLDHVLKIPAIQYTVTDEELIPTGEIAS
back to top

mRNA from alignment at M-pyrifera_M_contig112141:2..586+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112141.2555.1 ID=mRNA_M-pyrifera_M_contig112141.2555.1|Name=mRNA_M-pyrifera_M_contig112141.2555.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=585bp|location=Sequence derived from alignment at M-pyrifera_M_contig112141:2..586+ (Macrocystis pyrifera P11B4 male)
GCCAAGATCATGACCCGCGGAGCCACACTTGTTGAACTCCATGTGCCAGA CAAAGACGGCAAAATCGAGGACGTGATCCTCGGCTTCGATGATGTAGCCG GGTACGAATCAGACGCCAACCAGTATTTCGGCTGCACCACCGGACGCGTC TGCAACCGCATCGACAGCGGACAGTTCACACTCGACGGCAAGATCTACTC CCTCGCCAAGAATGACGGCGAAAAGCATCACTTGCACGGCGGTGCAGACC GCAGCCTCGACAAGGTCATCTGGAATGCGAAGCCGTTTGAGGACAACAGG ACAAATGGCGTCATCTTCACATATACGAGCCCTGATGGAGAAGAAGGCTA TCCCGGAAACCTCTCGATCAGTGTGACCTATCGAGTCCAAAAGATGATGA ACGTCCTGGAGATTCACTACGAGGCGACGACCGATCAGCCGACACCGATC AACCTGACGAACCATATGTATTTGAACTTAGCAGGTGCAGGGACAGATTC GGTTCTCGATCATGTCCTCAAGATCCCTGCGATTCAGTACACGGTCACCG ATGAGGAATTAATTCCCACAGGAGAAATAGCAAGC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig112141:2..586+

>mRNA_M-pyrifera_M_contig112141.2555.1 ID=mRNA_M-pyrifera_M_contig112141.2555.1|Name=mRNA_M-pyrifera_M_contig112141.2555.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1152bp|location=Sequence derived from alignment at M-pyrifera_M_contig112141:2..586+ (Macrocystis pyrifera P11B4 male)
ATGACCCGCGGAGCCACACTTGTTGAACTCCATGTGCCAGACAAAGACGG
CAAAATCGAGGACGTGATCCTCGGCTTCGATGATGTAGCCGGGTACGAAT
CAGACGCCAACCAGTATTTCGGCTGCACCACCGGACGCGTCTGCAACCGC
ATCGACAGCGGACAGTTCACACTCGACGGCAAGATCTACTCCCTCGCCAA
GAATGACGGCGAAAAGCATCACTTGCACGGCGGTGCAGACCGCAGCCTCG
ACAAGGTCATCTGGAATGCGAAGCCGTTTGAGGACAACAGGACAAATGGC
GTCATCTTCACATATACGAGCCCTGATGGAGAAGAAGGCTATCCCGGAAA
CCTCTCGATCAGTGTGACCTATCGAGTCCAAAAGATGATGAACGTCCTGG
AGATTCACTACGAGGCGACGACCGATCAGCCGACACCGATCAACCTGACG
AACCATATGTATTTGAACTTAGCAGGTGCAGGGACAGATTCGGTTCTCGA
TCATGTCCTCAAGATCCCTGCGATTCAGTACACGGTCACCGATGAGGAAT
TAATTCCCACAGGAGAAATAGCAAGCATGACCCGCGGAGCCACACTTGTT
GAACTCCATGTGCCAGACAAAGACGGCAAAATCGAGGACGTGATCCTCGG
CTTCGATGATGTAGCCGGGTACGAATCAGACGCCAACCAGTATTTCGGCT
GCACCACCGGACGCGTCTGCAACCGCATCGACAGCGGACAGTTCACACTC
GACGGCAAGATCTACTCCCTCGCCAAGAATGACGGCGAAAAGCATCACTT
GCACGGCGGTGCAGACCGCAGCCTCGACAAGGTCATCTGGAATGCGAAGC
CGTTTGAGGACAACAGGACAAATGGCGTCATCTTCACATATACGAGCCCT
GATGGAGAAGAAGGCTATCCCGGAAACCTCTCGATCAGTGTGACCTATCG
AGTCCAAAAGATGATGAACGTCCTGGAGATTCACTACGAGGCGACGACCG
ATCAGCCGACACCGATCAACCTGACGAACCATATGTATTTGAACTTAGCA
GGTGCAGGGACAGATTCGGTTCTCGATCATGTCCTCAAGATCCCTGCGAT
TCAGTACACGGTCACCGATGAGGAATTAATTCCCACAGGAGAAATAGCAA
GC
back to top