mRNA_M-pyrifera_M_contig112127.2551.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112127.2551.1
Unique NamemRNA_M-pyrifera_M_contig112127.2551.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig112127.2551.1 vs. uniprot
Match: UPI00193DCAE6 (CCR4-NOT transcription complex subunit 11-like n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193DCAE6)

HSP 1 Score: 99.0 bits (245), Expect = 4.320e-25
Identity = 43/70 (61.43%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    4 YISNCIATCEAVEDKYHKHRLVRLVCVFLGSLIRSRRVRIKELFVEIQAFCVEFSRIKEAQVLYTLLRSV 213
            YISNCI+TCE +ED+Y ++RLVRLVCVFL SLIR++ + ++ELF+E+Q+FC+EFSRI+EA  L+ LL+ +
Sbjct:   38 YISNCISTCETIEDRYMQNRLVRLVCVFLQSLIRNKIINVQELFIEVQSFCIEFSRIREAAALFRLLKQL 107
[Close]
BLAST of mRNA_M-pyrifera_M_contig112127.2551.1 vs. uniprot
Match: A0A8D8ZF59_9HEMI (CCR4-NOT transcription complex subunit 11 n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8ZF59_9HEMI)

HSP 1 Score: 98.6 bits (244), Expect = 7.030e-25
Identity = 43/70 (61.43%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    4 YISNCIATCEAVEDKYHKHRLVRLVCVFLGSLIRSRRVRIKELFVEIQAFCVEFSRIKEAQVLYTLLRSV 213
            YISNCI+TCE ++D+Y ++RLVRLVCVFL SLIR++ + ++ELF+E+QAFC+EFSRI+EA  L+ LL+ +
Sbjct:   28 YISNCISTCETIKDRYMQNRLVRLVCVFLQSLIRNKIINVQELFIEVQAFCIEFSRIREAAALFRLLKQL 97
[Close]
BLAST of mRNA_M-pyrifera_M_contig112127.2551.1 vs. uniprot
Match: A0A5N4CCX4_CAMDR (CCR4-NOT transcription complex subunit 11 n=1 Tax=Camelus dromedarius TaxID=9838 RepID=A0A5N4CCX4_CAMDR)

HSP 1 Score: 97.4 bits (241), Expect = 9.220e-25
Identity = 43/70 (61.43%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    4 YISNCIATCEAVEDKYHKHRLVRLVCVFLGSLIRSRRVRIKELFVEIQAFCVEFSRIKEAQVLYTLLRSV 213
            YISNCI+TCE ++DKY ++RLVRLVCVFL SLIR++ + +++LF+E+QAFC+EFSRI+EA  L+ LL+++
Sbjct:   26 YISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTL 95
[Close]
BLAST of mRNA_M-pyrifera_M_contig112127.2551.1 vs. uniprot
Match: A0A6I9N6U0_9TELE (CCR4-NOT transcription complex subunit 11 n=2 Tax=Eupercaria TaxID=1489922 RepID=A0A6I9N6U0_9TELE)

HSP 1 Score: 97.4 bits (241), Expect = 1.030e-24
Identity = 43/70 (61.43%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    4 YISNCIATCEAVEDKYHKHRLVRLVCVFLGSLIRSRRVRIKELFVEIQAFCVEFSRIKEAQVLYTLLRSV 213
            YISNCI+TCE ++DKY ++RLVRLVCVFL SLIR++ + +++LF+E+QAFC+EFSRI+EA  L+ LL+++
Sbjct:   31 YISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTL 100
[Close]
BLAST of mRNA_M-pyrifera_M_contig112127.2551.1 vs. uniprot
Match: A0A7R9FLF4_9NEOP (CCR4-NOT transcription complex subunit 11 n=3 Tax=Timema TaxID=61471 RepID=A0A7R9FLF4_9NEOP)

HSP 1 Score: 98.6 bits (244), Expect = 1.110e-24
Identity = 43/70 (61.43%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    4 YISNCIATCEAVEDKYHKHRLVRLVCVFLGSLIRSRRVRIKELFVEIQAFCVEFSRIKEAQVLYTLLRSV 213
            YISNCI+TCE ++D+Y ++RLVRLVCVFL SLIR++ + ++ELF+E+QAFC+EFSRI+EA  L+ LL+ +
Sbjct:   65 YISNCISTCETIKDRYMQNRLVRLVCVFLQSLIRNKIINVQELFIEVQAFCIEFSRIREAAALFRLLKQL 134
[Close]
BLAST of mRNA_M-pyrifera_M_contig112127.2551.1 vs. uniprot
Match: UPI00103A23A7 (CCR4-NOT transcription complex subunit 11 n=1 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI00103A23A7)

HSP 1 Score: 97.8 bits (242), Expect = 1.410e-24
Identity = 42/70 (60.00%), Postives = 60/70 (85.71%), Query Frame = 1 
Query:    4 YISNCIATCEAVEDKYHKHRLVRLVCVFLGSLIRSRRVRIKELFVEIQAFCVEFSRIKEAQVLYTLLRSV 213
            YISNCI+TCE + D+Y ++RLVRLVCVFL SLIR++ + +KE+F+E++AFC+EFSRI+EA  L+ LL+ +
Sbjct:   53 YISNCISTCETIRDRYMQNRLVRLVCVFLQSLIRNKIINVKEIFIEVEAFCIEFSRIREAAALFRLLKQL 122
[Close]
BLAST of mRNA_M-pyrifera_M_contig112127.2551.1 vs. uniprot
Match: UPI0008DE7913 (CCR4-NOT transcription complex subunit 11-like n=1 Tax=Bactrocera latifrons TaxID=174628 RepID=UPI0008DE7913)

HSP 1 Score: 97.1 bits (240), Expect = 1.460e-24
Identity = 47/70 (67.14%), Postives = 59/70 (84.29%), Query Frame = 1 
Query:    4 YISNCIATCEAVEDKYHKHRLVRLVCVFLGSLIRSRRVRIKELFVEIQAFCVEFSRIKEAQVLYTLLRSV 213
            YISNCI+TCE V+DKY + RLVRLVCVFL SLIR++ + +KEL +EI+AFCV FSRIKEA  LY LL+++
Sbjct:   16 YISNCISTCETVKDKYMQSRLVRLVCVFLQSLIRNKIINVKELLIEIEAFCVGFSRIKEAVGLYRLLKNL 85
[Close]
BLAST of mRNA_M-pyrifera_M_contig112127.2551.1 vs. uniprot
Match: A0A3R7SYJ8_PENVA (CCR4-NOT transcription complex subunit 11 n=5 Tax=Penaeus TaxID=133894 RepID=A0A3R7SYJ8_PENVA)

HSP 1 Score: 98.6 bits (244), Expect = 3.370e-24
Identity = 43/70 (61.43%), Postives = 61/70 (87.14%), Query Frame = 1 
Query:    4 YISNCIATCEAVEDKYHKHRLVRLVCVFLGSLIRSRRVRIKELFVEIQAFCVEFSRIKEAQVLYTLLRSV 213
            YISNCI+TCE ++D+Y ++RLVRLVCVFL SLIR++ + ++ELF+E+QAFC+EFSRI+EA  L+ LL+ +
Sbjct:  113 YISNCISTCETIKDRYMQNRLVRLVCVFLQSLIRNKIINVQELFIEVQAFCIEFSRIREAAALFRLLKQL 182
[Close]
BLAST of mRNA_M-pyrifera_M_contig112127.2551.1 vs. uniprot
Match: A0A2H6NE16_MICLE (CCR4-NOT transcription complex subunit 11 n=2 Tax=Sauria TaxID=32561 RepID=A0A2H6NE16_MICLE)

HSP 1 Score: 97.4 bits (241), Expect = 4.550e-24
Identity = 43/70 (61.43%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    4 YISNCIATCEAVEDKYHKHRLVRLVCVFLGSLIRSRRVRIKELFVEIQAFCVEFSRIKEAQVLYTLLRSV 213
            YISNCI+TCE ++DKY ++RLVRLVCVFL SLIR++ + +++LF+E+QAFC+EFSRI+EA  L+ LL+++
Sbjct:   85 YISNCISTCEQIKDKYMQNRLVRLVCVFLQSLIRNKIINVQDLFIEVQAFCIEFSRIREAAGLFRLLKTL 154
[Close]
BLAST of mRNA_M-pyrifera_M_contig112127.2551.1 vs. uniprot
Match: A0A0P8XN96_DROAN (CCR4-NOT transcription complex subunit 11 n=26 Tax=Sophophora TaxID=32341 RepID=A0A0P8XN96_DROAN)

HSP 1 Score: 98.6 bits (244), Expect = 6.940e-24
Identity = 47/68 (69.12%), Postives = 58/68 (85.29%), Query Frame = 1 
Query:    4 YISNCIATCEAVEDKYHKHRLVRLVCVFLGSLIRSRRVRIKELFVEIQAFCVEFSRIKEAQVLYTLLR 207
            YISNCI+TCE V+DKY + RLVRLVCVFL SLIR++ V +KELF+EI+AFCV FS+IKEA  LY L++
Sbjct:  144 YISNCISTCETVKDKYMQSRLVRLVCVFLQSLIRNKIVNVKELFIEIEAFCVGFSKIKEAAALYRLIK 211
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112127.2551.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00193DCAE64.320e-2561.43CCR4-NOT transcription complex subunit 11-like n=1... [more]
A0A8D8ZF59_9HEMI7.030e-2561.43CCR4-NOT transcription complex subunit 11 n=1 Tax=... [more]
A0A5N4CCX4_CAMDR9.220e-2561.43CCR4-NOT transcription complex subunit 11 n=1 Tax=... [more]
A0A6I9N6U0_9TELE1.030e-2461.43CCR4-NOT transcription complex subunit 11 n=2 Tax=... [more]
A0A7R9FLF4_9NEOP1.110e-2461.43CCR4-NOT transcription complex subunit 11 n=3 Tax=... [more]
UPI00103A23A71.410e-2460.00CCR4-NOT transcription complex subunit 11 n=1 Tax=... [more]
UPI0008DE79131.460e-2467.14CCR4-NOT transcription complex subunit 11-like n=1... [more]
A0A3R7SYJ8_PENVA3.370e-2461.43CCR4-NOT transcription complex subunit 11 n=5 Tax=... [more]
A0A2H6NE16_MICLE4.550e-2461.43CCR4-NOT transcription complex subunit 11 n=2 Tax=... [more]
A0A0P8XN96_DROAN6.940e-2469.12CCR4-NOT transcription complex subunit 11 n=26 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112127contigM-pyrifera_M_contig112127:333..545 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score99.0
Seed ortholog evalue9.5e-19
Seed eggNOG ortholog132113.XP_003490141.1
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006401,GO:0006402,GO:0006417,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0017148,GO:0019222,GO:0019439,GO:0030014,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032268,GO:0032269,GO:0032991,GO:0034248,GO:0034249,GO:0034641,GO:0034655,GO:0043170,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:0090304,GO:1901360,GO:1901361,GO:1901575,GO:2000112,GO:2000113
EggNOG free text desc.Uncharacterized conserved protein (DUF2363)
EggNOG OGs38HRB@33154,3BF07@33208,3D1AV@33213,3SJYI@50557,41WJ2@6656,46H4D@7399,COG3823@1,KOG4508@2759
COG Functional cat.O
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.3455987-CDS-M-pyrifera_M_contig112127:332..5451622815635.3455987-CDS-M-pyrifera_M_contig112127:332..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112127 333..545 +
1692277498.0421531-CDS-M-pyrifera_M_contig112127:332..5451692277498.0421531-CDS-M-pyrifera_M_contig112127:332..545Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112127 333..545 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112127.2551.1prot_M-pyrifera_M_contig112127.2551.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112127 333..545 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112127.2551.1

>prot_M-pyrifera_M_contig112127.2551.1 ID=prot_M-pyrifera_M_contig112127.2551.1|Name=mRNA_M-pyrifera_M_contig112127.2551.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=71bp
RYISNCIATCEAVEDKYHKHRLVRLVCVFLGSLIRSRRVRIKELFVEIQA
FCVEFSRIKEAQVLYTLLRSV
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mRNA from alignment at M-pyrifera_M_contig112127:333..545+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112127.2551.1 ID=mRNA_M-pyrifera_M_contig112127.2551.1|Name=mRNA_M-pyrifera_M_contig112127.2551.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=213bp|location=Sequence derived from alignment at M-pyrifera_M_contig112127:333..545+ (Macrocystis pyrifera P11B4 male)
AGGTACATTTCGAACTGCATTGCGACTTGCGAGGCAGTGGAGGACAAGTA
CCACAAGCACCGTTTGGTGCGTCTGGTGTGCGTGTTCCTGGGGAGTCTGA
TTCGTTCGCGGCGCGTGCGCATCAAGGAGCTCTTCGTGGAGATCCAAGCC
TTTTGCGTCGAGTTCTCCCGCATCAAGGAGGCGCAGGTCCTCTACACGCT
GCTGCGCTCCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112127:333..545+

>mRNA_M-pyrifera_M_contig112127.2551.1 ID=mRNA_M-pyrifera_M_contig112127.2551.1|Name=mRNA_M-pyrifera_M_contig112127.2551.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=426bp|location=Sequence derived from alignment at M-pyrifera_M_contig112127:333..545+ (Macrocystis pyrifera P11B4 male)
AGGTACATTTCGAACTGCATTGCGACTTGCGAGGCAGTGGAGGACAAGTA
CCACAAGCACCGTTTGGTGCGTCTGGTGTGCGTGTTCCTGGGGAGTCTGA
TTCGTTCGCGGCGCGTGCGCATCAAGGAGCTCTTCGTGGAGATCCAAGCC
TTTTGCGTCGAGTTCTCCCGCATCAAGGAGGCGCAGGTCCTCTACACGCT
GCTGCGCTCCGTCAGGTACATTTCGAACTGCATTGCGACTTGCGAGGCAG
TGGAGGACAAGTACCACAAGCACCGTTTGGTGCGTCTGGTGTGCGTGTTC
CTGGGGAGTCTGATTCGTTCGCGGCGCGTGCGCATCAAGGAGCTCTTCGT
GGAGATCCAAGCCTTTTGCGTCGAGTTCTCCCGCATCAAGGAGGCGCAGG
TCCTCTACACGCTGCTGCGCTCCGTC
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