mRNA_M-pyrifera_M_contig112109.2545.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112109.2545.1
Unique NamemRNA_M-pyrifera_M_contig112109.2545.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112109.2545.1 vs. uniprot
Match: A0A3D4UG30_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D4UG30_9BACT)

HSP 1 Score: 140 bits (353), Expect = 1.400e-35
Identity = 76/174 (43.68%), Postives = 106/174 (60.92%), Query Frame = 1
Query:    1 LHASMLGCGHQRVYECALSGGLMLCRRSWDEVYYQDWIQENGFICKGLPADVTILGWNQLGYSIENHPELQEMMAYRARVKRPPYGWNHEMFGHVVFAHLDHFTGFKHWDAPTPPEQLRSVEILGDPIELTFSTREDLEERILRAVRDRDWREEQSSGVRNRVRQQVTMKRFAQ 522
            LHAS +GCGHQR+ EC LSGGLML RRSWDE Y ++  +   F+      D  ++   +  +SI NH +L+ ++  RAR+ RP  GW+HE F   ++A +D  +  +      P    R +++L DP  LTFST+++LE  ILRAVRD  WR  +S G R RV   V+M RFA+
Sbjct:  456 LHASSMGCGHQRIGECVLSGGLMLARRSWDECYRENLFKMQAFLESEPEPDACLIHDRRPCFSIGNHQQLRTIIEERARIPRPIVGWDHEQFDDGIYAPIDAQSQPQFRTDTLPVLNQRPLQLLDDPDALTFSTQDELETGILRAVRDDAWRAARSVGTRTRVTDIVSMDRFAE 629          
BLAST of mRNA_M-pyrifera_M_contig112109.2545.1 vs. uniprot
Match: UPI001982EBBC (Uncharacterized protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=UPI001982EBBC)

HSP 1 Score: 63.9 bits (154), Expect = 1.080e-8
Identity = 55/168 (32.74%), Postives = 77/168 (45.83%), Query Frame = 1
Query:   28 HQRVYECALSGGLMLCRRSWDEVYYQDWIQENGFICKGLPADVTILGWNQLGYSIENHPELQEMMAYRARVKRP----PYGWNHEMFGHVVFAHLDHFTGFKHWDAPTPPEQLRSVEILGDPIELTFSTREDLEERILRAVRDRDWREEQSSGVRNRVRQQVTMKRFA 519
            HQRV ECA+SGGL LCR +   ++     +  G + +    DV  +    LGYS+ + P     +    R+  P      GW   M+ H  +  +D+ TG    +A    + +   E+LGD    TFS    LE    RAV D  WRE  S  +  RVR  +T   FA
Sbjct:  635 HQRVMECAMSGGLPLCRLTRGLIHALTG-RFCGSLVRDASPDVCSMDREYLGYSVADSPTAMACLTQFQRLGVPLPCVQSGW---MYIHKKW--IDYHTGS---EAIRNSDMMGLEELLGDLSRFTFSDAASLEALASRAVEDPHWRETGSELIAGRVRAGLTHDMFA 793          
BLAST of mRNA_M-pyrifera_M_contig112109.2545.1 vs. uniprot
Match: A0A651F4P5_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A651F4P5_9BACT)

HSP 1 Score: 60.5 bits (145), Expect = 1.680e-7
Identity = 51/175 (29.14%), Postives = 74/175 (42.29%), Query Frame = 1
Query:    1 LHASMLGCGHQRVYECALSGGLMLCRRSWDEVYYQDWIQENGFICKGLPADVTILGWNQLGYSIENHPELQEMMAYRARVKRPPYGWNHEMFGHVVFAHLDHFTGFKHWDAPTPPEQLRSVEILGDPIELTFSTREDLEERILRAVRDRDWREEQSSGVRNRVRQQVTMKRFAQR 525
            LHAS +   HQRV ECALSGG   CR +  ++   D +          P + +     Q      NH  L  +MA R R+  P + W H +          +F            E+     +LGD  E+TF  R   E  I RA+ D  +R   +  +R R+ +++T   FA R
Sbjct:  629 LHASPVATVHQRVIECALSGGFAACRITGSDISILDAVASARLA--NTPPEASYPPLRQEVAFTSNHAHLCMLMAQRQRLGLPVWQW-HCLMQEFRDPERPYFIS----------EEFSPAWLLGDLSEITFWDRPSFERLIDRAMTDDRFRASTTQSIRARIHERLTHDAFAGR 790          
BLAST of mRNA_M-pyrifera_M_contig112109.2545.1 vs. uniprot
Match: A0A5Q4ENN5_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A5Q4ENN5_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 1.200e-5
Identity = 52/180 (28.89%), Postives = 84/180 (46.67%), Query Frame = 1
Query:    1 LHASMLGCGHQRVYECALSGGLMLCRRSWDEVYYQDWIQENGFICKG--LPADVTILGWNQLGYSIENHPELQEMMAYRARV-KRPPYGWNHEMFGHVVFAHLDHFTGFKHWDAPTPPE-QLRSVEILGDPIELTFSTREDLEERILRAVRDRDWREEQSSGVRNRVRQQVTMKRFAQRL 528
            LHAS+    HQRV ECA+SGG+ LCRR ++ +  Q   +   F+      P    +   +    +I++   L  M A R R+ +R P     +++              + W  P      + S  +LGD  E TF++ E+LE  + +AV    WR   S G+ NR R++ T +   +R+
Sbjct:  645 LHASVHSLWHQRVLECAMSGGVPLCRRKFENL--QAMQRATAFLIHEHCAPEYGKLKSRDHRLRTIDSVDALM-MAAQRQRLGERAPI---EQIYN-------------ERWALPEVKRPDVASAMLLGDLCETTFASEEELERLVEKAVEMPAWRRSVSGGISNRARRRFTYQASVKRI 805          
BLAST of mRNA_M-pyrifera_M_contig112109.2545.1 vs. uniprot
Match: A0A2E2NAT9_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E2NAT9_9BACT)

HSP 1 Score: 53.1 bits (126), Expect = 5.480e-5
Identity = 45/177 (25.42%), Postives = 75/177 (42.37%), Query Frame = 1
Query:    1 LHASMLGCGHQRVYECALSGGLMLCRRSWDEVYYQDWIQENGFICKGLPADVTILGWNQLGYSIENHPELQEMMAYRARVKRPPYGWNHEMFGHVVFAHLDHFT-GFKHWDAPTPPEQLRSVEILGDPIELTFSTREDLEERILRAVRDRDWREEQSSGVRNRVRQQVTMKRFAQRL 528
            LH  ++   HQRV+ECA SGGL +     D +    +      +    P  V      +  +++E+ P  + M+  RA+   PP           +    D    G ++ D   P   +    +LGD   + F+    LE  + RA+ DR WR+  S+ +  R    ++   FA+RL
Sbjct:  594 LHIDLMALTHQRVFECAFSGGLAVSAFQLDALATTRYRAREELLASATPRSVND-ATGERTFALEDAPSGRAMIEQRAKFGLPPIT--------DITCPKDLVPRGDRYRDVALPAFDV--CGLLGDVASVAFTDESSLEAVLDRAINDRSWRDATSADIARRASGVLSTDAFAKRL 759          
BLAST of mRNA_M-pyrifera_M_contig112109.2545.1 vs. uniprot
Match: A0A3M2BFV9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2BFV9_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 7.420e-5
Identity = 57/185 (30.81%), Postives = 73/185 (39.46%), Query Frame = 1
Query:    1 LHASMLGCGHQRVYECALSGGLMLCRRSWDEVYYQDWIQENGFICKGLPADVTILGWNQLGYSIENHPELQEMMAYRARVK---------RPPYGWNHEMFGHVVFAHLDHFTGFKHWDAPTPPEQLRSVEILGDPIELTFSTREDLEERILRAVRDRDWREEQSSGVRNRVRQQVTMKRFAQRL 528
            LHASM    HQRV ECALSGGL LCR     +           +C   P  V   G   L +  + H  L+ +    AR           RP    N + F  V F            D  T      +  +LGDP E  F  R  +E  I RAV D  WR  ++  + + VR  +T     +RL
Sbjct:  633 LHASMCTLVHQRVMECALSGGLPLCRLVQPNLGASRQRAIAELVCTAEPDRVQSDG--TLVFRTDAHEPLRRLRTTFARAGFELPDEFAVRPRTAENMKRF-RVAF------------DGET------AEGLLGDPAEAMFRDRLSMERLIERAVSDDVWRNARTQQIADHVRTHLTHDALVKRL 796          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112109.2545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A3D4UG30_9BACT1.400e-3543.68Uncharacterized protein n=2 Tax=Phycisphaerae TaxI... [more]
UPI001982EBBC1.080e-832.74Uncharacterized protein n=1 Tax=Pyrinomonadaceae b... [more]
A0A651F4P5_9BACT1.680e-729.14Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]
A0A5Q4ENN5_9BACT1.200e-528.89Uncharacterized protein n=1 Tax=Phycisphaeraceae b... [more]
A0A2E2NAT9_9BACT5.480e-525.42Uncharacterized protein n=1 Tax=Phycisphaerae bact... [more]
A0A3M2BFV9_9BACT7.420e-530.81Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112109contigM-pyrifera_M_contig112109:1..582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.1
Seed ortholog evalue1.2e-06
Seed eggNOG ortholog1142394.PSMK_25270
KEGG koko:K02016
KEGG TC3.A.1.14
KEGG Pathwayko02010,map02010
KEGG ModuleM00240
Hectar predicted targeting categoryother localisation
EggNOG free text desc.abc-type fe3 -hydroxamate transport system, periplasmic component
EggNOG OGsCOG0614@1,COG0614@2
COG Functional cat.P
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02000
Exons2
Model size528
Cds size516
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112109.2545.1prot_M-pyrifera_M_contig112109.2545.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112109 1..570 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.0516047-CDS-M-pyrifera_M_contig112109:0..2441622815635.0516047-CDS-M-pyrifera_M_contig112109:0..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112109 1..244 -
1692277497.898782-CDS-M-pyrifera_M_contig112109:0..2441692277497.898782-CDS-M-pyrifera_M_contig112109:0..244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112109 1..244 -
1622815635.0652976-CDS-M-pyrifera_M_contig112109:298..5701622815635.0652976-CDS-M-pyrifera_M_contig112109:298..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112109 299..570 -
1692277497.9174335-CDS-M-pyrifera_M_contig112109:298..5701692277497.9174335-CDS-M-pyrifera_M_contig112109:298..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112109 299..570 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.0764253-UTR-M-pyrifera_M_contig112109:570..5821622815635.0764253-UTR-M-pyrifera_M_contig112109:570..582Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112109 571..582 -
1692277497.9304392-UTR-M-pyrifera_M_contig112109:570..5821692277497.9304392-UTR-M-pyrifera_M_contig112109:570..582Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112109 571..582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112109.2545.1

>prot_M-pyrifera_M_contig112109.2545.1 ID=prot_M-pyrifera_M_contig112109.2545.1|Name=mRNA_M-pyrifera_M_contig112109.2545.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=172bp
MLGCGHQRVYECALSGGLMLCRRSWDEVYYQDWIQENGFICKGLPADVTI
LGWNQLGYSIENHPELQEMMAYRARVKRPPYGWNHEMFGHVVFAHLDHFT
GFKHWDAPTPPEQLRSVEILGDPIELTFSTREDLEERILRAVRDRDWREE
QSSGVRNRVRQQVTMKRFAQRL
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mRNA from alignment at M-pyrifera_M_contig112109:1..582-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112109.2545.1 ID=mRNA_M-pyrifera_M_contig112109.2545.1|Name=mRNA_M-pyrifera_M_contig112109.2545.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig112109:1..582- (Macrocystis pyrifera P11B4 male)
CTGCACGCTTCGATGCTCGGGTGCGGGCATCAACGCGTGTATGAATGTGC TCTGTCGGGCGGGCTGATGCTCTGCCGACGATCATGGGACGAGGTGTACT ATCAGGACTGGATCCAGGAAAACGGATTCATCTGCAAGGGGCTCCCAGCG GATGTGACAATCTTGGGATGGAATCAGCTGGGATACTCGATCGAGAATCA TCCCGAGCTACAGGAAATGATGGCGTATCGGGCGCGGGTGAAACGTCCTC CCTATGGATGGAATCATGAAATGTTCGGGCATGTGTACGATGACTTCGGG ACAGACAATGTCCGGATCCGTGCAGACATCCCTGTGAGCGTCTTTGCTCA TCTCGATCACTTTACAGGTTTCAAGCACTGGGATGCTCCGACCCCTCCCG AGCAGTTGCGGTCGGTAGAGATCTTGGGTGATCCGATCGAGCTGACATTC TCTACACGAGAAGATCTCGAAGAACGGATCCTGAGAGCAGTGCGGGATCG GGATTGGCGGGAAGAGCAATCCAGCGGCGTGCGGAATCGGGTGCGACAGC AAGTCACGATGAAACGATTTGCGCAGCGCCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112109:1..582-

>mRNA_M-pyrifera_M_contig112109.2545.1 ID=mRNA_M-pyrifera_M_contig112109.2545.1|Name=mRNA_M-pyrifera_M_contig112109.2545.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig112109:1..582- (Macrocystis pyrifera P11B4 male)
ATGCTCGGGTGCGGGCATCAACGCGTGTATGAATGTGCTCTGTCGGGCGG
GCTGATGCTCTGCCGACGATCATGGGACGAGGTGTACTATCAGGACTGGA
TCCAGGAAAACGGATTCATCTGCAAGGGGCTCCCAGCGGATGTGACAATC
TTGGGATGGAATCAGCTGGGATACTCGATCGAGAATCATCCCGAGCTACA
GGAAATGATGGCGTATCGGGCGCGGGTGAAACGTCCTCCCTATGGATGGA
ATCATGAAATGTTCGGGCATGTATGCTCGGGTGCGGGCATCAACGCGTGT
ATGAATGTGCTCTGTCGGGCGGGCTGATGCTCTGCCGACGATCATGGGAC
GAGGTGTACTATCAGGACTGGATCCAGGAAAACGGATTCATCTGCAAGGG
GCTCCCAGCGGATGTGACAATCTTGGGATGGAATCAGCTGGGATACTCGA
TCGAGAATCATCCCGAGCTACAGGAAATGATGGCGTATCGGGCGCGGGTG
AAACGTCCTCCCTATGGATGGAATCATGAAATGTTCGGGCATGTCGTCTT
TGCTCATCTCGATCACTTTACAGGTTTCAAGCACTGGGATGCTCCGACCC
CTCCCGAGCAGTTGCGGTCGGTAGAGATCTTGGGTGATCCGATCGAGCTG
ACATTCTCTACACGAGAAGATCTCGAAGAACGGATCCTGAGAGCAGTGCG
GGATCGGGATTGGCGGGAAGAGCAATCCAGCGGCGTGCGGAATCGGGTGC
GACAGCAAGTCACGATGAAACGATTTGCGCAGCGCCTGCGTCTTTGCTCA
TCTCGATCACTTTACAGGTTTCAAGCACTGGGATGCTCCGACCCCTCCCG
AGCAGTTGCGGTCGGTAGAGATCTTGGGTGATCCGATCGAGCTGACATTC
TCTACACGAGAAGATCTCGAAGAACGGATCCTGAGAGCAGTGCGGGATCG
GGATTGGCGGGAAGAGCAATCCAGCGGCGTGCGGAATCGGGTGCGACAGC
AAGTCACGATGAAACGATTTGCGCAGCGCCTG
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