mRNA_M-pyrifera_M_contig112109.2545.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig112109.2545.1 vs. uniprot
Match: A0A3D4UG30_9BACT (Uncharacterized protein n=2 Tax=Phycisphaerae TaxID=666505 RepID=A0A3D4UG30_9BACT) HSP 1 Score: 140 bits (353), Expect = 1.400e-35 Identity = 76/174 (43.68%), Postives = 106/174 (60.92%), Query Frame = 1
Query: 1 LHASMLGCGHQRVYECALSGGLMLCRRSWDEVYYQDWIQENGFICKGLPADVTILGWNQLGYSIENHPELQEMMAYRARVKRPPYGWNHEMFGHVVFAHLDHFTGFKHWDAPTPPEQLRSVEILGDPIELTFSTREDLEERILRAVRDRDWREEQSSGVRNRVRQQVTMKRFAQ 522
LHAS +GCGHQR+ EC LSGGLML RRSWDE Y ++ + F+ D ++ + +SI NH +L+ ++ RAR+ RP GW+HE F ++A +D + + P R +++L DP LTFST+++LE ILRAVRD WR +S G R RV V+M RFA+
Sbjct: 456 LHASSMGCGHQRIGECVLSGGLMLARRSWDECYRENLFKMQAFLESEPEPDACLIHDRRPCFSIGNHQQLRTIIEERARIPRPIVGWDHEQFDDGIYAPIDAQSQPQFRTDTLPVLNQRPLQLLDDPDALTFSTQDELETGILRAVRDDAWRAARSVGTRTRVTDIVSMDRFAE 629
BLAST of mRNA_M-pyrifera_M_contig112109.2545.1 vs. uniprot
Match: UPI001982EBBC (Uncharacterized protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=UPI001982EBBC) HSP 1 Score: 63.9 bits (154), Expect = 1.080e-8 Identity = 55/168 (32.74%), Postives = 77/168 (45.83%), Query Frame = 1
Query: 28 HQRVYECALSGGLMLCRRSWDEVYYQDWIQENGFICKGLPADVTILGWNQLGYSIENHPELQEMMAYRARVKRP----PYGWNHEMFGHVVFAHLDHFTGFKHWDAPTPPEQLRSVEILGDPIELTFSTREDLEERILRAVRDRDWREEQSSGVRNRVRQQVTMKRFA 519
HQRV ECA+SGGL LCR + ++ + G + + DV + LGYS+ + P + R+ P GW M+ H + +D+ TG +A + + E+LGD TFS LE RAV D WRE S + RVR +T FA
Sbjct: 635 HQRVMECAMSGGLPLCRLTRGLIHALTG-RFCGSLVRDASPDVCSMDREYLGYSVADSPTAMACLTQFQRLGVPLPCVQSGW---MYIHKKW--IDYHTGS---EAIRNSDMMGLEELLGDLSRFTFSDAASLEALASRAVEDPHWRETGSELIAGRVRAGLTHDMFA 793
BLAST of mRNA_M-pyrifera_M_contig112109.2545.1 vs. uniprot
Match: A0A651F4P5_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A651F4P5_9BACT) HSP 1 Score: 60.5 bits (145), Expect = 1.680e-7 Identity = 51/175 (29.14%), Postives = 74/175 (42.29%), Query Frame = 1
Query: 1 LHASMLGCGHQRVYECALSGGLMLCRRSWDEVYYQDWIQENGFICKGLPADVTILGWNQLGYSIENHPELQEMMAYRARVKRPPYGWNHEMFGHVVFAHLDHFTGFKHWDAPTPPEQLRSVEILGDPIELTFSTREDLEERILRAVRDRDWREEQSSGVRNRVRQQVTMKRFAQR 525
LHAS + HQRV ECALSGG CR + ++ D + P + + Q NH L +MA R R+ P + W H + +F E+ +LGD E+TF R E I RA+ D +R + +R R+ +++T FA R
Sbjct: 629 LHASPVATVHQRVIECALSGGFAACRITGSDISILDAVASARLA--NTPPEASYPPLRQEVAFTSNHAHLCMLMAQRQRLGLPVWQW-HCLMQEFRDPERPYFIS----------EEFSPAWLLGDLSEITFWDRPSFERLIDRAMTDDRFRASTTQSIRARIHERLTHDAFAGR 790
BLAST of mRNA_M-pyrifera_M_contig112109.2545.1 vs. uniprot
Match: A0A5Q4ENN5_9BACT (Uncharacterized protein n=1 Tax=Phycisphaeraceae bacterium TaxID=2026777 RepID=A0A5Q4ENN5_9BACT) HSP 1 Score: 55.1 bits (131), Expect = 1.200e-5 Identity = 52/180 (28.89%), Postives = 84/180 (46.67%), Query Frame = 1
Query: 1 LHASMLGCGHQRVYECALSGGLMLCRRSWDEVYYQDWIQENGFICKG--LPADVTILGWNQLGYSIENHPELQEMMAYRARV-KRPPYGWNHEMFGHVVFAHLDHFTGFKHWDAPTPPE-QLRSVEILGDPIELTFSTREDLEERILRAVRDRDWREEQSSGVRNRVRQQVTMKRFAQRL 528
LHAS+ HQRV ECA+SGG+ LCRR ++ + Q + F+ P + + +I++ L M A R R+ +R P +++ + W P + S +LGD E TF++ E+LE + +AV WR S G+ NR R++ T + +R+
Sbjct: 645 LHASVHSLWHQRVLECAMSGGVPLCRRKFENL--QAMQRATAFLIHEHCAPEYGKLKSRDHRLRTIDSVDALM-MAAQRQRLGERAPI---EQIYN-------------ERWALPEVKRPDVASAMLLGDLCETTFASEEELERLVEKAVEMPAWRRSVSGGISNRARRRFTYQASVKRI 805
BLAST of mRNA_M-pyrifera_M_contig112109.2545.1 vs. uniprot
Match: A0A2E2NAT9_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A2E2NAT9_9BACT) HSP 1 Score: 53.1 bits (126), Expect = 5.480e-5 Identity = 45/177 (25.42%), Postives = 75/177 (42.37%), Query Frame = 1
Query: 1 LHASMLGCGHQRVYECALSGGLMLCRRSWDEVYYQDWIQENGFICKGLPADVTILGWNQLGYSIENHPELQEMMAYRARVKRPPYGWNHEMFGHVVFAHLDHFT-GFKHWDAPTPPEQLRSVEILGDPIELTFSTREDLEERILRAVRDRDWREEQSSGVRNRVRQQVTMKRFAQRL 528
LH ++ HQRV+ECA SGGL + D + + + P V + +++E+ P + M+ RA+ PP + D G ++ D P + +LGD + F+ LE + RA+ DR WR+ S+ + R ++ FA+RL
Sbjct: 594 LHIDLMALTHQRVFECAFSGGLAVSAFQLDALATTRYRAREELLASATPRSVND-ATGERTFALEDAPSGRAMIEQRAKFGLPPIT--------DITCPKDLVPRGDRYRDVALPAFDV--CGLLGDVASVAFTDESSLEAVLDRAINDRSWRDATSADIARRASGVLSTDAFAKRL 759
BLAST of mRNA_M-pyrifera_M_contig112109.2545.1 vs. uniprot
Match: A0A3M2BFV9_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3M2BFV9_9BACT) HSP 1 Score: 52.8 bits (125), Expect = 7.420e-5 Identity = 57/185 (30.81%), Postives = 73/185 (39.46%), Query Frame = 1
Query: 1 LHASMLGCGHQRVYECALSGGLMLCRRSWDEVYYQDWIQENGFICKGLPADVTILGWNQLGYSIENHPELQEMMAYRARVK---------RPPYGWNHEMFGHVVFAHLDHFTGFKHWDAPTPPEQLRSVEILGDPIELTFSTREDLEERILRAVRDRDWREEQSSGVRNRVRQQVTMKRFAQRL 528
LHASM HQRV ECALSGGL LCR + +C P V G L + + H L+ + AR RP N + F V F D T + +LGDP E F R +E I RAV D WR ++ + + VR +T +RL
Sbjct: 633 LHASMCTLVHQRVMECALSGGLPLCRLVQPNLGASRQRAIAELVCTAEPDRVQSDG--TLVFRTDAHEPLRRLRTTFARAGFELPDEFAVRPRTAENMKRF-RVAF------------DGET------AEGLLGDPAEAMFRDRLSMERLIERAVSDDVWRNARTQQIADHVRTHLTHDALVKRL 796 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112109.2545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig112109.2545.1 >prot_M-pyrifera_M_contig112109.2545.1 ID=prot_M-pyrifera_M_contig112109.2545.1|Name=mRNA_M-pyrifera_M_contig112109.2545.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=172bp MLGCGHQRVYECALSGGLMLCRRSWDEVYYQDWIQENGFICKGLPADVTIback to top mRNA from alignment at M-pyrifera_M_contig112109:1..582- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig112109.2545.1 ID=mRNA_M-pyrifera_M_contig112109.2545.1|Name=mRNA_M-pyrifera_M_contig112109.2545.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig112109:1..582- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig112109:1..582- >mRNA_M-pyrifera_M_contig112109.2545.1 ID=mRNA_M-pyrifera_M_contig112109.2545.1|Name=mRNA_M-pyrifera_M_contig112109.2545.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1032bp|location=Sequence derived from alignment at M-pyrifera_M_contig112109:1..582- (Macrocystis pyrifera P11B4 male)back to top |