mRNA_M-pyrifera_M_contig112105.2544.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112105.2544.1
Unique NamemRNA_M-pyrifera_M_contig112105.2544.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112105.2544.1 vs. uniprot
Match: A0A5C5ZIC7_9BACT (Uncharacterized protein n=2 Tax=Pseudobythopirellula maris TaxID=2527991 RepID=A0A5C5ZIC7_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 1.860e-7
Identity = 49/167 (29.34%), Postives = 77/167 (46.11%), Query Frame = 1 
Query:  100 WFDDFRIALFFALLGRNLQHAEQVADYIGDDLPFDEGSWDRDANDRLAYSLICEYICKKKVSLDAAE------TITQGRSKRPKLLLSLLVAIQKGDPTAFEKPFRDLVNHFKNREM-KLAKRDINTVRIVTSFDAGVILNLATMEGMEVTLPDDDIADFVITNTSL 579
            W + FR  LF  LL  +     ++A+++  DLP+DE  +D    D     L+   I  + VS D AE      +I + R+KR KLLL  LVAI++ D  +        + H+  RE  K    D  T+      +  ++  LA  +GM +     D+   ++T  SL
Sbjct:  112 WAEVFRDGLFLGLLAGDDSACSRLAEWVTPDLPYDEAFYDLTPADNAWLKLVSFLI--RGVSFDRAECQPLIESIAKARTKRAKLLLEPLVAIEQADQDSLLPAMAAWMRHYLKREFAKEMFPDYVTI------EGSIVTALAKRKGMSLEGLPGDLLSAIVTRKSL 270
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112105.2544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5C5ZIC7_9BACT1.860e-729.34Uncharacterized protein n=2 Tax=Pseudobythopirellu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112105contigM-pyrifera_M_contig112105:4..582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size579
Cds size579
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815635.0165915-CDS-M-pyrifera_M_contig112105:3..5821622815635.0165915-CDS-M-pyrifera_M_contig112105:3..582Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112105 4..582 +
1692277497.881085-CDS-M-pyrifera_M_contig112105:3..5821692277497.881085-CDS-M-pyrifera_M_contig112105:3..582Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112105 4..582 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112105.2544.1prot_M-pyrifera_M_contig112105.2544.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112105 4..582 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112105.2544.1

>prot_M-pyrifera_M_contig112105.2544.1 ID=prot_M-pyrifera_M_contig112105.2544.1|Name=mRNA_M-pyrifera_M_contig112105.2544.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=193bp
LGADLFCGAWRDGVLLDSGEAIDSEQCRSEYESWFDDFRIALFFALLGRN
LQHAEQVADYIGDDLPFDEGSWDRDANDRLAYSLICEYICKKKVSLDAAE
TITQGRSKRPKLLLSLLVAIQKGDPTAFEKPFRDLVNHFKNREMKLAKRD
INTVRIVTSFDAGVILNLATMEGMEVTLPDDDIADFVITNTSL
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mRNA from alignment at M-pyrifera_M_contig112105:4..582+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112105.2544.1 ID=mRNA_M-pyrifera_M_contig112105.2544.1|Name=mRNA_M-pyrifera_M_contig112105.2544.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=579bp|location=Sequence derived from alignment at M-pyrifera_M_contig112105:4..582+ (Macrocystis pyrifera P11B4 male)
CTAGGTGCAGACCTGTTTTGCGGTGCCTGGCGTGACGGAGTATTGCTTGA
TTCTGGTGAAGCAATAGACAGCGAGCAGTGTCGGAGCGAATATGAGTCAT
GGTTCGACGATTTTCGGATCGCTCTTTTTTTTGCACTTCTTGGTAGAAAC
TTGCAACACGCCGAACAAGTTGCGGACTACATCGGAGATGACCTTCCCTT
TGATGAAGGATCTTGGGACCGTGATGCCAATGATCGATTGGCCTACTCAC
TGATTTGTGAGTACATTTGCAAGAAGAAAGTTTCGCTCGATGCAGCTGAA
ACGATCACACAAGGTCGCTCCAAACGACCAAAACTGTTGCTGTCGCTACT
CGTTGCCATTCAAAAGGGAGACCCGACAGCTTTTGAGAAGCCGTTTCGGG
ATCTCGTAAACCACTTCAAGAACCGAGAGATGAAGCTTGCGAAGAGAGAT
ATCAATACGGTCAGAATTGTTACTTCATTTGACGCTGGCGTGATATTGAA
TCTAGCAACCATGGAAGGCATGGAAGTTACCCTTCCTGACGATGACATCG
CAGATTTCGTAATTACGAACACTTCGCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112105:4..582+

>mRNA_M-pyrifera_M_contig112105.2544.1 ID=mRNA_M-pyrifera_M_contig112105.2544.1|Name=mRNA_M-pyrifera_M_contig112105.2544.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1158bp|location=Sequence derived from alignment at M-pyrifera_M_contig112105:4..582+ (Macrocystis pyrifera P11B4 male)
CTAGGTGCAGACCTGTTTTGCGGTGCCTGGCGTGACGGAGTATTGCTTGA
TTCTGGTGAAGCAATAGACAGCGAGCAGTGTCGGAGCGAATATGAGTCAT
GGTTCGACGATTTTCGGATCGCTCTTTTTTTTGCACTTCTTGGTAGAAAC
TTGCAACACGCCGAACAAGTTGCGGACTACATCGGAGATGACCTTCCCTT
TGATGAAGGATCTTGGGACCGTGATGCCAATGATCGATTGGCCTACTCAC
TGATTTGTGAGTACATTTGCAAGAAGAAAGTTTCGCTCGATGCAGCTGAA
ACGATCACACAAGGTCGCTCCAAACGACCAAAACTGTTGCTGTCGCTACT
CGTTGCCATTCAAAAGGGAGACCCGACAGCTTTTGAGAAGCCGTTTCGGG
ATCTCGTAAACCACTTCAAGAACCGAGAGATGAAGCTTGCGAAGAGAGAT
ATCAATACGGTCAGAATTGTTACTTCATTTGACGCTGGCGTGATATTGAA
TCTAGCAACCATGGAAGGCATGGAAGTTACCCTTCCTGACGATGACATCG
CAGATTTCGTAATTACGAACACTTCGCTGCTAGGTGCAGACCTGTTTTGC
GGTGCCTGGCGTGACGGAGTATTGCTTGATTCTGGTGAAGCAATAGACAG
CGAGCAGTGTCGGAGCGAATATGAGTCATGGTTCGACGATTTTCGGATCG
CTCTTTTTTTTGCACTTCTTGGTAGAAACTTGCAACACGCCGAACAAGTT
GCGGACTACATCGGAGATGACCTTCCCTTTGATGAAGGATCTTGGGACCG
TGATGCCAATGATCGATTGGCCTACTCACTGATTTGTGAGTACATTTGCA
AGAAGAAAGTTTCGCTCGATGCAGCTGAAACGATCACACAAGGTCGCTCC
AAACGACCAAAACTGTTGCTGTCGCTACTCGTTGCCATTCAAAAGGGAGA
CCCGACAGCTTTTGAGAAGCCGTTTCGGGATCTCGTAAACCACTTCAAGA
ACCGAGAGATGAAGCTTGCGAAGAGAGATATCAATACGGTCAGAATTGTT
ACTTCATTTGACGCTGGCGTGATATTGAATCTAGCAACCATGGAAGGCAT
GGAAGTTACCCTTCCTGACGATGACATCGCAGATTTCGTAATTACGAACA
CTTCGCTG
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