mRNA_M-pyrifera_M_contig112103.2543.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112103.2543.1
Unique NamemRNA_M-pyrifera_M_contig112103.2543.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112103.2543.1 vs. uniprot
Match: A0A5A8CTN0_CAFRO (EF-hand domain-containing protein n=4 Tax=Sar TaxID=2698737 RepID=A0A5A8CTN0_CAFRO)

HSP 1 Score: 58.2 bits (139), Expect = 4.750e-8
Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 1 
Query:   19 SGTIDRESFQRLLS--DLKIPASSLVPHAPAEAATVMTPRSEFDAGRLFERYDSNHSGQLERGEFHALVKDLG 231
            +GTI R+SF R++S  D+K PA      AP E   + TPR++F+AGR+FERYD   +G +++ +F AL+   G
Sbjct:   61 AGTISRDSFARMVSELDIKAPAGG----APRE---LPTPRTDFEAGRVFERYDDAAAGGVDKAQFEALLYQNG 126
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BLAST of mRNA_M-pyrifera_M_contig112103.2543.1 vs. uniprot
Match: A0A1V9ZTR5_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTR5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.150e-7
Identity = 38/90 (42.22%), Postives = 48/90 (53.33%), Query Frame = 1 
Query:    1 RYDAHRSGTIDRESFQRLLSDLKIPAS------SLVPHAPAEAATV-----MTPR-SEFDAGRLFERYDSNHSGQLERGEFHALVKDLGK 234
            RYD  + G I R  F +LL D            +L P A  +AA +      T R SEF+AG+LFERYDSN SG L+  EFH+  +D  K
Sbjct:   58 RYDREKLGHITRVDFMQLLQDYTASYPQRKWDMALSPCALTDAAGIPLGFERTARNSEFEAGQLFERYDSNRSGSLDLKEFHSFFRDFKK 147
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BLAST of mRNA_M-pyrifera_M_contig112103.2543.1 vs. uniprot
Match: A0A1V9ZRA6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZRA6_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 7.330e-7
Identity = 34/90 (37.78%), Postives = 45/90 (50.00%), Query Frame = 1 
Query:    1 RYDAHRSGTIDRESFQRLLSDL------KIPASSLVPHAPAEAATV------MTPRSEFDAGRLFERYDSNHSGQLERGEFHALVKDLGK 234
            RYD  + G I R  F  LL D       +    ++ P A  +AA +          SEF+AG+LFERYD+N SG L+  EFH   +D  K
Sbjct:   57 RYDREKLGHITRFDFMELLKDYTDSYPHRKSEMAISPCALTDAAGIPLGFERTAKNSEFEAGQLFERYDTNRSGTLDLKEFHGFFRDFKK 146
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BLAST of mRNA_M-pyrifera_M_contig112103.2543.1 vs. uniprot
Match: A0A067CH11_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CH11_SAPPC)

HSP 1 Score: 54.7 bits (130), Expect = 7.630e-7
Identity = 32/88 (36.36%), Postives = 46/88 (52.27%), Query Frame = 1 
Query:    1 RYDAHRSGTIDRESFQRLLSDLKIPASS----LVPHAPAEAATV------MTPRSEFDAGRLFERYDSNHSGQLERGEFHALVKDLGK 234
            RYD  + G I R+ F +LL+D           + P A  ++A +       +  SEF+AG+LFERYD++ SG L   EFH   +D  K
Sbjct:   53 RYDREKLGHITRDDFMQLLTDYNASQPQRKWEMAPCALTDSAGIPLGFERTSRNSEFEAGQLFERYDTDRSGTLNLKEFHGFFRDFKK 140
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BLAST of mRNA_M-pyrifera_M_contig112103.2543.1 vs. uniprot
Match: W4GKB8_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GKB8_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 3.710e-6
Identity = 35/90 (38.89%), Postives = 46/90 (51.11%), Query Frame = 1 
Query:    1 RYDAHRSGTIDRESFQRLLSDLKI--PASS----LVPHAPAEAATV------MTPRSEFDAGRLFERYDSNHSGQLERGEFHALVKDLGK 234
            RYD  ++  + R  F  LL D     P       ++P A  +AA V       +  SEF+AG+LFERYD+N SG LE GEF    +D  K
Sbjct:   79 RYDREKANHVTRSDFLDLLRDYTTWYPGRKWNMPVMPCALTDAAGVPLGFERTSRNSEFEAGQLFERYDTNRSGTLELGEFQLFFRDFKK 168
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BLAST of mRNA_M-pyrifera_M_contig112103.2543.1 vs. uniprot
Match: A0A024UT27_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UT27_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 3.230e-5
Identity = 34/90 (37.78%), Postives = 45/90 (50.00%), Query Frame = 1 
Query:    1 RYDAHRSGTIDRESFQRLLSDLKI--PASS----LVPHAPAEAATV------MTPRSEFDAGRLFERYDSNHSGQLERGEFHALVKDLGK 234
            RYD  ++  I R  F  LL D     P       ++P A  +AA +       +  SEF+AG+LFERYD+N SG LE  EF    +D  K
Sbjct:   77 RYDREKANHITRSDFLDLLRDYTAWYPGRKWNMPVMPCALTDAAGIPLGFERTSRNSEFEAGQLFERYDTNRSGTLEATEFQLFFRDFKK 166
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BLAST of mRNA_M-pyrifera_M_contig112103.2543.1 vs. uniprot
Match: A0A6G0WK53_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WK53_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 3.290e-5
Identity = 37/90 (41.11%), Postives = 46/90 (51.11%), Query Frame = 1 
Query:    1 RYDAHRSGTIDRESFQRLLSDLKI--PASS----LVPHAPAEAATV-----MTPRS-EFDAGRLFERYDSNHSGQLERGEFHALVKDLGK 234
            RYD  ++  I R  F  LL D     P       ++P A  +AA +      T R+ EF+AG+LFERYDSN SG LE  EF    KD  K
Sbjct:   83 RYDREKAHHITRSDFLELLRDYTAWYPGRKWDMPVMPCALTDAAGIPLGFERTARNTEFEAGQLFERYDSNRSGTLEIKEFQLFYKDFKK 172
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BLAST of mRNA_M-pyrifera_M_contig112103.2543.1 vs. uniprot
Match: A0A024UU91_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UU91_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 3.310e-5
Identity = 34/90 (37.78%), Postives = 45/90 (50.00%), Query Frame = 1 
Query:    1 RYDAHRSGTIDRESFQRLLSDLKI--PASS----LVPHAPAEAATV------MTPRSEFDAGRLFERYDSNHSGQLERGEFHALVKDLGK 234
            RYD  ++  I R  F  LL D     P       ++P A  +AA +       +  SEF+AG+LFERYD+N SG LE  EF    +D  K
Sbjct:   77 RYDREKANHITRSDFLDLLRDYTAWYPGRKWNMPVMPCALTDAAGIPLGFERTSRNSEFEAGQLFERYDTNRSGTLEATEFQLFFRDFKK 166
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112103.2543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A5A8CTN0_CAFRO4.750e-843.84EF-hand domain-containing protein n=4 Tax=Sar TaxI... [more]
A0A1V9ZTR5_9STRA1.150e-742.22Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A1V9ZRA6_9STRA7.330e-737.78Uncharacterized protein (Fragment) n=1 Tax=Thraust... [more]
A0A067CH11_SAPPC7.630e-736.36Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
W4GKB8_9STRA3.710e-638.89Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A024UT27_9STRA3.230e-537.78Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0WK53_9STRA3.290e-541.11Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024UU91_9STRA3.310e-537.78Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112103contigM-pyrifera_M_contig112103:53..289 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.9773898-CDS-M-pyrifera_M_contig112103:52..2891622815634.9773898-CDS-M-pyrifera_M_contig112103:52..289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112103 53..289 +
1692277497.866986-CDS-M-pyrifera_M_contig112103:52..2891692277497.866986-CDS-M-pyrifera_M_contig112103:52..289Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112103 53..289 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112103.2543.1prot_M-pyrifera_M_contig112103.2543.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112103 53..289 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112103.2543.1

>prot_M-pyrifera_M_contig112103.2543.1 ID=prot_M-pyrifera_M_contig112103.2543.1|Name=mRNA_M-pyrifera_M_contig112103.2543.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=79bp
RYDAHRSGTIDRESFQRLLSDLKIPASSLVPHAPAEAATVMTPRSEFDAG
RLFERYDSNHSGQLERGEFHALVKDLGKK
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mRNA from alignment at M-pyrifera_M_contig112103:53..289+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112103.2543.1 ID=mRNA_M-pyrifera_M_contig112103.2543.1|Name=mRNA_M-pyrifera_M_contig112103.2543.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=237bp|location=Sequence derived from alignment at M-pyrifera_M_contig112103:53..289+ (Macrocystis pyrifera P11B4 male)
AGGTATGATGCGCATAGGAGCGGAACGATTGACCGTGAGTCGTTTCAGCG
ATTGTTGTCTGATTTGAAGATTCCTGCATCTTCTCTCGTCCCCCATGCAC
CTGCAGAGGCTGCAACAGTGATGACTCCTCGCAGTGAATTCGATGCCGGG
CGTTTATTCGAGCGGTATGACTCGAATCATAGCGGTCAATTGGAAAGAGG
CGAATTTCATGCTCTTGTCAAGGACTTGGGCAAAAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112103:53..289+

>mRNA_M-pyrifera_M_contig112103.2543.1 ID=mRNA_M-pyrifera_M_contig112103.2543.1|Name=mRNA_M-pyrifera_M_contig112103.2543.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig112103:53..289+ (Macrocystis pyrifera P11B4 male)
AGGTATGATGCGCATAGGAGCGGAACGATTGACCGTGAGTCGTTTCAGCG
ATTGTTGTCTGATTTGAAGATTCCTGCATCTTCTCTCGTCCCCCATGCAC
CTGCAGAGGCTGCAACAGTGATGACTCCTCGCAGTGAATTCGATGCCGGG
CGTTTATTCGAGCGGTATGACTCGAATCATAGCGGTCAATTGGAAAGAGG
CGAATTTCATGCTCTTGTCAAGGACTTGGGCAAAAAAAGGTATGATGCGC
ATAGGAGCGGAACGATTGACCGTGAGTCGTTTCAGCGATTGTTGTCTGAT
TTGAAGATTCCTGCATCTTCTCTCGTCCCCCATGCACCTGCAGAGGCTGC
AACAGTGATGACTCCTCGCAGTGAATTCGATGCCGGGCGTTTATTCGAGC
GGTATGACTCGAATCATAGCGGTCAATTGGAAAGAGGCGAATTTCATGCT
CTTGTCAAGGACTTGGGCAAAAAA
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