mRNA_M-pyrifera_M_contig11208.2534.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11208.2534.1
Unique NamemRNA_M-pyrifera_M_contig11208.2534.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11208.2534.1 vs. uniprot
Match: D7FV69_ECTSI (DPH-type MB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV69_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 3.330e-39
Identity = 70/104 (67.31%), Postives = 76/104 (73.08%), Query Frame = 1 
Query:    1 MSSIVYEEVPLAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIRVVFNESDLPELRPEEEXXXXXXXXXXXESVLKSESFVVAPVVVPAQA 312
            MS++VYEEV L EM Y DSEQMYYYECPCGDKFEISLEDLYDGED APCPSCTLQI+V+F ES+LPELRPEEE                 E  VVA  +V AQA
Sbjct:    1 MSAVVYEEVALEEMVYNDSEQMYYYECPCGDKFEISLEDLYDGEDIAPCPSCTLQIKVLFEESELPELRPEEEKEEEHGHDSRG-----GEPVVVASTLVEAQA 99
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BLAST of mRNA_M-pyrifera_M_contig11208.2534.1 vs. uniprot
Match: A0A835Z4X0_9STRA (Diphthamide biosynthesis protein 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4X0_9STRA)

HSP 1 Score: 100 bits (250), Expect = 8.330e-26
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    7 SIVYEEVPLAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIRVVFNESDLPELRPEE 216
            S+VYEEV LA+MT++ +EQMY Y CPCGD FEISLEDL DGED APCPSCTL+IRV+++   LP L+  E
Sbjct:    4 SVVYEEVALADMTFDAAEQMYTYSCPCGDLFEISLEDLLDGEDIAPCPSCTLRIRVLYDMESLPPLQQPE 73
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BLAST of mRNA_M-pyrifera_M_contig11208.2534.1 vs. uniprot
Match: A0A662X3X8_9STRA (DPH-type MB domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X3X8_9STRA)

HSP 1 Score: 100 bits (249), Expect = 9.200e-26
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:   13 VYEEVPLAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIRVVFNESDLPELRPEEE 219
            VY+EV + +M +   EQ YYY CPCGDKF I+LEDLYDGED A CPSC+L IRVVF+E +LPEL+ EEE
Sbjct:    3 VYDEVEIEDMEFNAEEQAYYYPCPCGDKFVIALEDLYDGEDIASCPSCSLTIRVVFDEDELPELKEEEE 71
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BLAST of mRNA_M-pyrifera_M_contig11208.2534.1 vs. uniprot
Match: A0A662Y1E6_9STRA (DPH-type MB domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1E6_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.860e-25
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:   13 VYEEVPLAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIRVVFNESDLPELRPEEE 219
            VY+EV + +M +   EQ YYY CPCGDKF I+LEDLYDGED A CPSC+L IRVVF+E +LPEL+ EEE
Sbjct:   27 VYDEVEIEDMEFNAEEQAYYYPCPCGDKFVIALEDLYDGEDIASCPSCSLTIRVVFDEGELPELKEEEE 95
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BLAST of mRNA_M-pyrifera_M_contig11208.2534.1 vs. uniprot
Match: G4YJ90_PHYSP (DPH-type MB domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=G4YJ90_PHYSP)

HSP 1 Score: 98.2 bits (243), Expect = 7.320e-25
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:   13 VYEEVPLAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIRVVFNESDLPELRPEEE 219
            VY+EV + +M ++  EQ+YYY CPCGD+F I LE+LYDGED A CPSC+L IRV+F+E  LPEL+ EEE
Sbjct:    4 VYDEVEIEDMEFDAEEQVYYYPCPCGDRFSIDLEELYDGEDIATCPSCSLTIRVIFDEETLPELKEEEE 72
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BLAST of mRNA_M-pyrifera_M_contig11208.2534.1 vs. uniprot
Match: A0A6A4D2K3_9STRA (DPH-type MB domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4D2K3_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.280e-24
Identity = 43/69 (62.32%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:   13 VYEEVPLAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIRVVFNESDLPELRPEEE 219
            VY+EV + +M ++  EQ+YYY CPCGD+F I LE+LYDGED A CPSC+L IRVVF+E +LPEL+ EE+
Sbjct:    4 VYDEVEIEDMEFDAEEQVYYYPCPCGDRFSIDLEELYDGEDIATCPSCSLTIRVVFDEENLPELKEEED 72
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BLAST of mRNA_M-pyrifera_M_contig11208.2534.1 vs. uniprot
Match: K3WTP3_GLOUD (DPH-type MB domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTP3_GLOUD)

HSP 1 Score: 97.1 bits (240), Expect = 1.930e-24
Identity = 42/68 (61.76%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:   13 VYEEVPLAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIRVVFNESDLPELRPEE 216
            VY+EV + +M Y+  EQ+YYY CPCGDKF I+L++LYDGED A CPSC+L +RVVF E DLPEL+ ++
Sbjct:    3 VYDEVEIEDMEYDAEEQVYYYPCPCGDKFFITLDELYDGEDIATCPSCSLTLRVVFEEDDLPELKDDD 70
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BLAST of mRNA_M-pyrifera_M_contig11208.2534.1 vs. uniprot
Match: A0A8K1CL36_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CL36_PYTOL)

HSP 1 Score: 95.1 bits (235), Expect = 1.110e-23
Identity = 41/69 (59.42%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:   13 VYEEVPLAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIRVVFNESDLPELRPEEE 219
            VY+EV + +M Y   EQ+YYY CPCGDKF I+LE+LYDGED A CPSC+L +RV+++E +LPEL+ ++E
Sbjct:    3 VYDEVEIEDMEYNAEEQVYYYPCPCGDKFFITLEELYDGEDEATCPSCSLILRVIYDEDNLPELKEDDE 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig11208.2534.1 vs. uniprot
Match: A0A1V9ZHU1_9STRA (Diphthamide biosynthesis protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHU1_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.710e-23
Identity = 40/69 (57.97%), Postives = 56/69 (81.16%), Query Frame = 1 
Query:   13 VYEEVPLAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIRVVFNESDLPELRPEEE 219
            VY+EV + +M ++++EQ+YYY CPCGDKF I L++LYDGED A CPSC+L IR++F+E  LP LR ++E
Sbjct:    3 VYDEVEIEDMEFDEAEQIYYYPCPCGDKFFIGLDELYDGEDIASCPSCSLTIRIIFDEDALPPLREDDE 71
[Close]
BLAST of mRNA_M-pyrifera_M_contig11208.2534.1 vs. uniprot
Match: A0A7S2W7Y0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W7Y0_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.080e-23
Identity = 41/64 (64.06%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:   13 VYEEVPLAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDTAPCPSCTLQIRVVFNESDLPEL 204
            VYEEV L +M Y+++  M++Y+CPCGD FEISLE+L+DGED APCPSC+L+IRV++ E DLP L
Sbjct:    3 VYEEVQLKDMRYDEANLMFFYQCPCGDLFEISLEELHDGEDIAPCPSCSLKIRVLYEEEDLPAL 66
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11208.2534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV69_ECTSI3.330e-3967.31DPH-type MB domain-containing protein n=2 Tax=Ecto... [more]
A0A835Z4X0_9STRA8.330e-2667.14Diphthamide biosynthesis protein 3 n=1 Tax=Tribone... [more]
A0A662X3X8_9STRA9.200e-2666.67DPH-type MB domain-containing protein n=1 Tax=Noth... [more]
A0A662Y1E6_9STRA1.860e-2566.67DPH-type MB domain-containing protein n=1 Tax=Noth... [more]
G4YJ90_PHYSP7.320e-2562.32DPH-type MB domain-containing protein n=12 Tax=Phy... [more]
A0A6A4D2K3_9STRA1.280e-2462.32DPH-type MB domain-containing protein n=3 Tax=Phyt... [more]
K3WTP3_GLOUD1.930e-2461.76DPH-type MB domain-containing protein n=1 Tax=Glob... [more]
A0A8K1CL36_PYTOL1.110e-2359.42Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9ZHU1_9STRA1.710e-2357.97Diphthamide biosynthesis protein n=1 Tax=Achlya hy... [more]
A0A7S2W7Y0_9STRA2.080e-2364.06Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11208contigM-pyrifera_M_contig11208:3963..5963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue1.4e-29
Seed eggNOG ortholog2880.D7FV69
Preferred nameDPH3
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00162,ko:K15455
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04922,map05230
KEGG ModuleM00307
Hectar predicted targeting categoryother localisation
GOsGO:0002097,GO:0002098,GO:0002791,GO:0002792,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006091,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006417,GO:0006448,GO:0006464,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008270,GO:0009055,GO:0009058,GO:0009451,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010608,GO:0016070,GO:0016491,GO:0017182,GO:0017183,GO:0018193,GO:0018202,GO:0019222,GO:0019538,GO:0022900,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032268,GO:0032879,GO:0032880,GO:0034248,GO:0034470,GO:0034641,GO:0034660,GO:0036211,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0048519,GO:0048523,GO:0050708,GO:0050709,GO:0050789,GO:0050794,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051098,GO:0051099,GO:0051171,GO:0051223,GO:0051224,GO:0051246,GO:0055114,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070201,GO:0071704,GO:0080090,GO:0090087,GO:0090304,GO:1900247,GO:1901360,GO:1901564,GO:1903530,GO:1903531,GO:1904950,GO:2000112,GO:2000765
EggNOG free text desc.peptidyl-diphthamide biosynthetic process from peptidyl-histidine
EggNOG OGsCOG5216@1,KOG2923@2759
Ec32 ortholog descriptionZinc finger, DPH-type
Ec32 orthologEc-12_007340.1
EC1.2.4.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko03012,ko03016
Exons2
Model size315
Cds size315
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.620838-CDS-M-pyrifera_M_contig11208:3962..40911622815634.620838-CDS-M-pyrifera_M_contig11208:3962..4091Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11208 3963..4091 -
1692277497.7087386-CDS-M-pyrifera_M_contig11208:3962..40911692277497.7087386-CDS-M-pyrifera_M_contig11208:3962..4091Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11208 3963..4091 -
1622815634.6339319-CDS-M-pyrifera_M_contig11208:5777..59631622815634.6339319-CDS-M-pyrifera_M_contig11208:5777..5963Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11208 5778..5963 -
1692277497.7268167-CDS-M-pyrifera_M_contig11208:5777..59631692277497.7268167-CDS-M-pyrifera_M_contig11208:5777..5963Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11208 5778..5963 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11208.2534.1prot_M-pyrifera_M_contig11208.2534.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11208 3963..5963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11208.2534.1

>prot_M-pyrifera_M_contig11208.2534.1 ID=prot_M-pyrifera_M_contig11208.2534.1|Name=mRNA_M-pyrifera_M_contig11208.2534.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=105bp
MSSIVYEEVPLAEMTYEDSEQMYYYECPCGDKFEISLEDLYDGEDTAPCP
SCTLQIRVVFNESDLPELRPEEEEDEEEEGQEEGESVLKSESFVVAPVVV
PAQA*
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mRNA from alignment at M-pyrifera_M_contig11208:3963..5963-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11208.2534.1 ID=mRNA_M-pyrifera_M_contig11208.2534.1|Name=mRNA_M-pyrifera_M_contig11208.2534.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2001bp|location=Sequence derived from alignment at M-pyrifera_M_contig11208:3963..5963- (Macrocystis pyrifera P11B4 male)
ATGTCCTCGATTGTGTACGAAGAGGTGCCTCTGGCCGAGATGACCTACGA
AGACTCGGAGCAGATGTACTACTACGAGTGTCCCTGCGGTGACAAATTTG
AGATTTCTTTGGAGGACCTATACGACGGCGAAGACACCGCTCCCTGTCCG
AGCTGCACGCTGCAGATCAGGGTCGTTTTCAACGAGGTGCGCGGGTTCCC
CTCGTGGGTTGTTTCTCTGTGATTTTTGCCTCTCCTACAAGTGAGCCTAA
CGAGCCTTGACGCTGCGTCAAGCAGTGTTATCTAGGTCATGTCTCCTTCG
CGTGTGAAGTGGCTGCAATGCAGCAGTAGCTTCCCCGTTCGCGCTTTTGA
ATTTTGTGGTCCTCCGGCAACTACGTGCTTGCTATTGATTGGGGTAAGGA
GTAAGGAGTGCCGCCGCCTCGCCCGTACGTGTGCACGTGCACGTGCCCAA
AAGGCCCAATGCACACAGAGTGTAGTAAAAACCTACCACAGGTATTATTA
ATACCTGGTACTGATGTACAGCAGTACAGCAGTATGTTGTTACTGCCGTT
GCCCATCTACGGCACGTTGTTGTTGTGTGCATGATGCACTATTAATACTG
CTGTAGTACAGCTGTGTAAGTATTACAACAGCAGGAGTACCGGTACTATC
TGTACATCTATTATTAGTCGGTGGGCGGACACATACCGGTCTCGTCCTGG
TTGGCGCTATGAATTACACACGATATAGAAAACGCGCGAACGGCTTACAT
ATCATCCAACTCGTAAAATTCAGTAAAAAATGGGGGGTACAAGTACAGAC
GAGGTGTATTTCAAAGCTGCAGCTTGCTTGGCCTGCAAAAGTTGAGTACC
AGGTATCAACTATCAATCAGTCGAACTCACAGCTGGCAGCTGACGTATTT
CATAAAAAAAAATTAATACTTGTAAATCAGCTTGTAAATCAGCAGATTTA
CACAGCAGCACGTACTCGTACGACTGCTGTATAGGAGCAAAGTATCGTAC
GTACCGAATACGACATAACAAACCACCCCAAGGGATAGCTGCTGTAAATT
GCGTTTTGTTTTCTTTCCACCAGTACGTAGTGGTTTCCTATGTGGTATCT
AACGTACCCCGGTGATAATGGACATGTTTTACTCGAGCTTTGCCACATTT
ACCACCGGGGGGTGGTTTATAGTGGGGGGGGGGTGATAGGAGTACAGAGG
GTATTATTTTGGCACACGTGGCACACGGAAGCAGGGGGGAGATAACAAGG
GGGGGGTTGGCGCTGCTGCGTTCAGGGGAGCTGGCGCTGCTGATGCCGGG
GCTTGAGGCGCGGTGAGCTGTGACGCTGTGGCGGGCGCAGGACTCACTGC
TGTGACTGGCATGGCACGCGTTGCCGTGGCTGGGTCGTCTATTAGAGCTG
CTGCCGGGGCTTGAGGGCCACAGGCGTGGCAGAGGTGATTTGCAGACGGA
CGAAAAACGAAGCGATCGTGGTCCCGCTCGTGGCTAAATACGCCAGTCGA
CCGTGTTGGGGAAGCCGGCTTCTCCCGGGCCACAGCAACGTTCTGCCCAC
GATGACGGGCCGCCCGTGAGGAAGGGCTCCGCGCCTGTTCGTTGTTGTCG
TCGTTCTCCAGGATTTACGCCGCCGAAAGATAACGATGCTGCAGCACATT
TGTGTGGGCCCCCCCGGGGGTGATATTTTTTCTGTTGTTCGGAAGGCGTA
TCGGCCCAAGGGGGTGGTATCTAGCGTGCCCCGGTGATGAACCTCGTCGG
GTGGCAGACATGATAGCAACACTCCGGCAATATATATTATTTGAATTTGA
GTTGGGTACGTATTGATGCCCCTCGTCCGGTTGCGACGCCCTTTCGCTCT
TTCCGCCTTCCCGTGAAACCAGAGCGATCTCCCAGAGCTGCGGCCGGAGG
AGGAGGAGGATGAGGAGGAGGAGGGGCAGGAGGAGGGAGAGAGCGTGCTA
AAGAGCGAGTCCTTCGTTGTGGCGCCGGTGGTTGTGCCGGCCCAGGCGTA
A
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11208:3963..5963-

>mRNA_M-pyrifera_M_contig11208.2534.1 ID=mRNA_M-pyrifera_M_contig11208.2534.1|Name=mRNA_M-pyrifera_M_contig11208.2534.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=630bp|location=Sequence derived from alignment at M-pyrifera_M_contig11208:3963..5963- (Macrocystis pyrifera P11B4 male)
ATGTCCTCGATTGTGTACGAAGAGGTGCCTCTGGCCGAGATGACCTACGA
AGACTCGGAGCAGATGTACTACTACGAGTGTCCCTGCGGTGACAAATTTG
AGATTTCTTTGGAGGACCTATACGACGGCGAAGACACCGCTCCCTGTCCG
AGCTGCACGCTGCAGATCAGGGTCGTTTTCAACGAGATGTCCTCGATTGT
GTACGAAGAGGTGCCTCTGGCCGAGATGACCTACGAAGACTCGGAGCAGA
TGTACTACTACGAGTGTCCCTGCGGTGACAAATTTGAGATTTCTTTGGAG
GACCTATACGACGGCGAAGACACCGCTCCCTGTCCGAGCTGCACGCTGCA
GATCAGGGTCGTTTTCAACGAGAGCGATCTCCCAGAGCTGCGGCCGGAGG
AGGAGGAGGATGAGGAGGAGGAGGGGCAGGAGGAGGGAGAGAGCGTGCTA
AAGAGCGAGTCCTTCGTTGTGGCGCCGGTGGTTGTGCCGGCCCAGGCGTA
AAGCGATCTCCCAGAGCTGCGGCCGGAGGAGGAGGAGGATGAGGAGGAGG
AGGGGCAGGAGGAGGGAGAGAGCGTGCTAAAGAGCGAGTCCTTCGTTGTG
GCGCCGGTGGTTGTGCCGGCCCAGGCGTAA
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