mRNA_M-pyrifera_M_contig112075.2532.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112075.2532.1
Unique NamemRNA_M-pyrifera_M_contig112075.2532.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112075.2532.1 vs. uniprot
Match: Q7UTB7_RHOBA (Uncharacterized protein n=1 Tax=Rhodopirellula baltica (strain DSM 10527 / NCIMB 13988 / SH1) TaxID=243090 RepID=Q7UTB7_RHOBA)

HSP 1 Score: 70.5 bits (171), Expect = 1.660e-12
Identity = 38/68 (55.88%), Postives = 42/68 (61.76%), Query Frame = 2 
Query:   14 FCVEGATLPSTTPSASRSRTNPAVCPTLFFVPIHCTAESVRPTGQPAYPTGLVSGKIVLLASPQRIRQ 217
            F +   T PS TP ASRS TNPAVCPT F  P+H T +SVRPTGQ  Y  G VSG       PQR R+
Sbjct:   71 FSLLAETSPSPTPPASRSTTNPAVCPTRFLTPLHTTFQSVRPTGQARYCHGGVSGNKFWHVLPQRNRR 138
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112075.2532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q7UTB7_RHOBA1.660e-1255.88Uncharacterized protein n=1 Tax=Rhodopirellula bal... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112075contigM-pyrifera_M_contig112075:230..586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size357
Cds size357
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.5369458-CDS-M-pyrifera_M_contig112075:229..5861622815634.5369458-CDS-M-pyrifera_M_contig112075:229..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112075 230..586 -
1692277497.6750536-CDS-M-pyrifera_M_contig112075:229..5861692277497.6750536-CDS-M-pyrifera_M_contig112075:229..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112075 230..586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112075.2532.1prot_M-pyrifera_M_contig112075.2532.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112075 230..586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112075.2532.1

>prot_M-pyrifera_M_contig112075.2532.1 ID=prot_M-pyrifera_M_contig112075.2532.1|Name=mRNA_M-pyrifera_M_contig112075.2532.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
MKRRVLRRRRHVAINHSLCITFPNEPSGLPHAVLRSDPLHCRVRPANRAA
SLPHWLGVRQDSSACIAPANPADWDLFSAGEAPLRTSPRSLRTSPRGVKT
RDLFSPPNRQKYPSNTYS*
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mRNA from alignment at M-pyrifera_M_contig112075:230..586-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112075.2532.1 ID=mRNA_M-pyrifera_M_contig112075.2532.1|Name=mRNA_M-pyrifera_M_contig112075.2532.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig112075:230..586- (Macrocystis pyrifera P11B4 male)
ATGAAACGCCGCGTTCTGCGTCGAAGGCGCCACGTTGCCATCAACCACTC
CCTCTGCATCACGTTCCCGAACGAACCCAGCGGTTTGCCCCACGCTGTTC
TTCGTTCCGATCCATTGCACTGCCGAGTCCGTCCGGCCAACCGGGCAGCC
AGCCTACCCCACTGGCTTGGTGTCAGGCAAGATAGTTCTGCTTGCATCGC
CCCAGCGAATCCGGCAGACTGGGACTTGTTCTCAGCGGGGGAGGCCCCGC
TGAGAACAAGTCCCCGCTCACTGAGAACAAGTCCCCGCGGAGTCAAAACT
CGCGACTTGTTCTCACCGCCAAACCGGCAAAAATACCCCTCAAACACCTA
TTCTTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112075:230..586-

>mRNA_M-pyrifera_M_contig112075.2532.1 ID=mRNA_M-pyrifera_M_contig112075.2532.1|Name=mRNA_M-pyrifera_M_contig112075.2532.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig112075:230..586- (Macrocystis pyrifera P11B4 male)
ATGAAACGCCGCGTTCTGCGTCGAAGGCGCCACGTTGCCATCAACCACTC
CCTCTGCATCACGTTCCCGAACGAACCCAGCGGTTTGCCCCACGCTGTTC
TTCGTTCCGATCCATTGCACTGCCGAGTCCGTCCGGCCAACCGGGCAGCC
AGCCTACCCCACTGGCTTGGTGTCAGGCAAGATAGTTCTGCTTGCATCGC
CCCAGCGAATCCGGCAGACTGGGACTTGTTCTCAGCGGGGGAGGCCCCGC
TGAGAACAAGTCCCCGCTCACTGAGAACAAGTCCCCGCGGAGTCAAAACT
CGCGACTTGTTCTCACCGCCAAACCGGCAAAAATACCCCTCAAACACCTA
TTCTTAGATGAAACGCCGCGTTCTGCGTCGAAGGCGCCACGTTGCCATCA
ACCACTCCCTCTGCATCACGTTCCCGAACGAACCCAGCGGTTTGCCCCAC
GCTGTTCTTCGTTCCGATCCATTGCACTGCCGAGTCCGTCCGGCCAACCG
GGCAGCCAGCCTACCCCACTGGCTTGGTGTCAGGCAAGATAGTTCTGCTT
GCATCGCCCCAGCGAATCCGGCAGACTGGGACTTGTTCTCAGCGGGGGAG
GCCCCGCTGAGAACAAGTCCCCGCTCACTGAGAACAAGTCCCCGCGGAGT
CAAAACTCGCGACTTGTTCTCACCGCCAAACCGGCAAAAATACCCCTCAA
ACACCTATTCTTAG
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