mRNA_M-pyrifera_M_contig112074.2531.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112074.2531.1
Unique NamemRNA_M-pyrifera_M_contig112074.2531.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig112074.2531.1 vs. uniprot
Match: A0A517PHV5_9PLAN (D-lactate dehydrogenase n=8 Tax=Gimesia TaxID=1649453 RepID=A0A517PHV5_9PLAN)

HSP 1 Score: 173 bits (438), Expect = 4.210e-51
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1 
Query:    1 TGQIGYAGLDVYEEEAGIFFHDISNQVLDDDVLARLMTFNNVVITSHQAFLTNEALDNIAETTYANIDEFFAGKRGAELTHHVG 252
            TGQIGYAGLDVYEEEAGIFFHDISNQVLDDDVLARLMTFNNVVITSHQAFLTNEALDNIAETTYANIDEFFAGKRGAELTHHVG
Sbjct:  301 TGQIGYAGLDVYEEEAGIFFHDISNQVLDDDVLARLMTFNNVVITSHQAFLTNEALDNIAETTYANIDEFFAGKRGAELTHHVG 384
[Close]
BLAST of mRNA_M-pyrifera_M_contig112074.2531.1 vs. uniprot
Match: A0A517X613_9PLAN (D-lactate dehydrogenase n=5 Tax=Gimesia TaxID=1649453 RepID=A0A517X613_9PLAN)

HSP 1 Score: 157 bits (396), Expect = 7.220e-45
Identity = 76/84 (90.48%), Postives = 81/84 (96.43%), Query Frame = 1 
Query:    1 TGQIGYAGLDVYEEEAGIFFHDISNQVLDDDVLARLMTFNNVVITSHQAFLTNEALDNIAETTYANIDEFFAGKRGAELTHHVG 252
            +GQIGYAGLDVYEEEAGIFF+DISNQVLDDDVLARLMTFNNVVITSHQAFLT EALDNIAETT+ANI E+FAGKRG ELT+HVG
Sbjct:  298 SGQIGYAGLDVYEEEAGIFFNDISNQVLDDDVLARLMTFNNVVITSHQAFLTREALDNIAETTFANIAEYFAGKRGTELTYHVG 381
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BLAST of mRNA_M-pyrifera_M_contig112074.2531.1 vs. uniprot
Match: A0A517VDP4_9PLAN (D-lactate dehydrogenase n=5 Tax=Planctomycetaceae TaxID=126 RepID=A0A517VDP4_9PLAN)

HSP 1 Score: 148 bits (374), Expect = 1.260e-41
Identity = 71/83 (85.54%), Postives = 79/83 (95.18%), Query Frame = 1 
Query:    1 TGQIGYAGLDVYEEEAGIFFHDISNQVLDDDVLARLMTFNNVVITSHQAFLTNEALDNIAETTYANIDEFFAGKRGAELTHHV 249
            +GQIGYAGLDVYEEEAGIFF DIS+QVL+DD+LARLMTFNNVVITSHQAFLT+EALDNIAETT +NI+EFFAGKR  +LTHHV
Sbjct:  295 SGQIGYAGLDVYEEEAGIFFRDISDQVLNDDILARLMTFNNVVITSHQAFLTHEALDNIAETTLSNIEEFFAGKRETDLTHHV 377
[Close]
BLAST of mRNA_M-pyrifera_M_contig112074.2531.1 vs. uniprot
Match: A0A518DC08_9BACT (D-lactate dehydrogenase n=2 Tax=Pirellulimonas nuda TaxID=2528009 RepID=A0A518DC08_9BACT)

HSP 1 Score: 135 bits (341), Expect = 1.090e-36
Identity = 67/83 (80.72%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:    1 TGQIGYAGLDVYEEEAGIFFHDISNQVLDDDVLARLMTFNNVVITSHQAFLTNEALDNIAETTYANIDEFFAGKRGAELTHHV 249
            +GQIGYAGLDVYEEEAGIFFHD+S +VL DDVLARL+TFNNVVITSHQAFLT EAL NIAETT ANI E  AG+RGA+LT+ V
Sbjct:  299 SGQIGYAGLDVYEEEAGIFFHDVSGKVLSDDVLARLLTFNNVVITSHQAFLTREALSNIAETTLANIAEHQAGRRGAQLTNAV 381
[Close]
BLAST of mRNA_M-pyrifera_M_contig112074.2531.1 vs. uniprot
Match: A0A356A3Z1_9PLAN (Hydroxyacid dehydrogenase (Fragment) n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A356A3Z1_9PLAN)

HSP 1 Score: 130 bits (326), Expect = 2.600e-36
Identity = 64/83 (77.11%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    1 TGQIGYAGLDVYEEEAGIFFHDISNQVLDDDVLARLMTFNNVVITSHQAFLTNEALDNIAETTYANIDEFFAGKRGAELTHHV 249
            +G IG AGLDVYEEEAGIFF+DIS+Q+L+DDVLARLMTFNNVVITSHQAFLT EALDNIAETT  N++EF  G RG  LT+ V
Sbjct:  115 SGHIGSAGLDVYEEEAGIFFNDISDQILNDDVLARLMTFNNVVITSHQAFLTREALDNIAETTLQNVNEFLEGHRGDSLTNGV 197
[Close]
BLAST of mRNA_M-pyrifera_M_contig112074.2531.1 vs. uniprot
Match: A0A3E0NDW0_9BACT (2-hydroxyacid dehydrogenase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3E0NDW0_9BACT)

HSP 1 Score: 132 bits (332), Expect = 8.780e-36
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:    4 GQIGYAGLDVYEEEAGIFFHDISNQVLDDDVLARLMTFNNVVITSHQAFLTNEALDNIAETTYANIDEFFAGKRGAELTHHV 249
            G+IG+AGLDVYEEEAGIFF D+SN+VL DDVLARLMTFNNVV+TSHQAFLT EAL NIA TT  N+ EF AGKRGAEL+H V
Sbjct:  250 GKIGFAGLDVYEEEAGIFFQDLSNKVLTDDVLARLMTFNNVVVTSHQAFLTREALANIARTTLDNVAEFAAGKRGAELSHAV 331
[Close]
BLAST of mRNA_M-pyrifera_M_contig112074.2531.1 vs. uniprot
Match: A0A356AG48_9PLAN (Hydroxyacid dehydrogenase n=1 Tax=Planctomycetaceae bacterium TaxID=2026779 RepID=A0A356AG48_9PLAN)

HSP 1 Score: 130 bits (328), Expect = 3.310e-35
Identity = 64/83 (77.11%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    1 TGQIGYAGLDVYEEEAGIFFHDISNQVLDDDVLARLMTFNNVVITSHQAFLTNEALDNIAETTYANIDEFFAGKRGAELTHHV 249
            +G IG AGLDVYEEEAGIFF+DIS+Q+L+DDVLARLM+FNNVVITSHQAFLT EALDNIAETT  N++EF AG RG  LT+ V
Sbjct:  249 SGHIGSAGLDVYEEEAGIFFNDISDQILNDDVLARLMSFNNVVITSHQAFLTQEALDNIAETTLQNVNEFLAGHRGKSLTNGV 331
[Close]
BLAST of mRNA_M-pyrifera_M_contig112074.2531.1 vs. uniprot
Match: A0A1D8T9J3_9NOCA (Hydroxyacid dehydrogenase n=2 Tax=Rhodococcus sp. WMMA185 TaxID=679318 RepID=A0A1D8T9J3_9NOCA)

HSP 1 Score: 129 bits (324), Expect = 1.520e-34
Identity = 60/83 (72.29%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:    1 TGQIGYAGLDVYEEEAGIFFHDISNQVLDDDVLARLMTFNNVVITSHQAFLTNEALDNIAETTYANIDEFFAGKRGAELTHHV 249
            +G++G AGLDVYEEE+G+FFHD+S+QVL DDVLARL+TFNNVV+TSHQ FLT EAL NIAETT ANI+E+  G+RGA+LT+ V
Sbjct:  249 SGKVGAAGLDVYEEESGVFFHDVSDQVLSDDVLARLLTFNNVVVTSHQGFLTREALANIAETTIANIEEYEQGRRGADLTNAV 331
[Close]
BLAST of mRNA_M-pyrifera_M_contig112074.2531.1 vs. uniprot
Match: A0A2E9VWS8_9PLAN (Hydroxyacid dehydrogenase n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E9VWS8_9PLAN)

HSP 1 Score: 128 bits (322), Expect = 2.570e-34
Identity = 63/83 (75.90%), Postives = 73/83 (87.95%), Query Frame = 1 
Query:    1 TGQIGYAGLDVYEEEAGIFFHDISNQVLDDDVLARLMTFNNVVITSHQAFLTNEALDNIAETTYANIDEFFAGKRGAELTHHV 249
            +G IG AGLDVYEEEAG+FF+DIS+Q+L+DDVLARLMTFNNVVITSHQAFLT+EALDNIAETT  NI+EF  G +G  LT+ V
Sbjct:  249 SGHIGSAGLDVYEEEAGVFFNDISDQILNDDVLARLMTFNNVVITSHQAFLTHEALDNIAETTLQNINEFLKGGQGDSLTNGV 331
[Close]
BLAST of mRNA_M-pyrifera_M_contig112074.2531.1 vs. uniprot
Match: A0A8B5WXP4_9GAMM (2-hydroxyacid dehydrogenase n=1 Tax=Candidatus Competibacteraceae bacterium TaxID=2053538 RepID=A0A8B5WXP4_9GAMM)

HSP 1 Score: 128 bits (321), Expect = 8.770e-34
Identity = 62/83 (74.70%), Postives = 74/83 (89.16%), Query Frame = 1 
Query:    1 TGQIGYAGLDVYEEEAGIFFHDISNQVLDDDVLARLMTFNNVVITSHQAFLTNEALDNIAETTYANIDEFFAGKRGAELTHHV 249
            +G+IG AGLDVYEEEAGIFFH++S++VL DDVLARLM+FNNVV+TSHQAFLT+EAL NIA+TT  N+ EF  GKRGAELT+ V
Sbjct:  295 SGKIGSAGLDVYEEEAGIFFHNLSHKVLTDDVLARLMSFNNVVVTSHQAFLTHEALSNIADTTLQNLGEFSEGKRGAELTNAV 377
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112074.2531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517PHV5_9PLAN4.210e-51100.00D-lactate dehydrogenase n=8 Tax=Gimesia TaxID=1649... [more]
A0A517X613_9PLAN7.220e-4590.48D-lactate dehydrogenase n=5 Tax=Gimesia TaxID=1649... [more]
A0A517VDP4_9PLAN1.260e-4185.54D-lactate dehydrogenase n=5 Tax=Planctomycetaceae ... [more]
A0A518DC08_9BACT1.090e-3680.72D-lactate dehydrogenase n=2 Tax=Pirellulimonas nud... [more]
A0A356A3Z1_9PLAN2.600e-3677.11Hydroxyacid dehydrogenase (Fragment) n=1 Tax=Planc... [more]
A0A3E0NDW0_9BACT8.780e-3679.272-hydroxyacid dehydrogenase n=1 Tax=Planctomycetes... [more]
A0A356AG48_9PLAN3.310e-3577.11Hydroxyacid dehydrogenase n=1 Tax=Planctomycetacea... [more]
A0A1D8T9J3_9NOCA1.520e-3472.29Hydroxyacid dehydrogenase n=2 Tax=Rhodococcus sp. ... [more]
A0A2E9VWS8_9PLAN2.570e-3475.90Hydroxyacid dehydrogenase n=2 Tax=Planctomycetacea... [more]
A0A8B5WXP4_9GAMM8.770e-3474.702-hydroxyacid dehydrogenase n=1 Tax=Candidatus Com... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112074contigM-pyrifera_M_contig112074:332..586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score162.9
Seed ortholog evalue6.4e-38
Seed eggNOG ortholog344747.PM8797T_05565
Preferred nameldhA
KEGG rclassRC00044
KEGG koko:K03778
KEGG ReactionR00704
KEGG Pathwayko00620,ko01120,map00620,map01120
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004457,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006006,GO:0006066,GO:0006067,GO:0006082,GO:0006083,GO:0006089,GO:0006090,GO:0006091,GO:0006103,GO:0006105,GO:0006113,GO:0006139,GO:0006163,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008720,GO:0009117,GO:0009123,GO:0009126,GO:0009132,GO:0009135,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009179,GO:0009185,GO:0009199,GO:0009205,GO:0009259,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0015942,GO:0015980,GO:0016491,GO:0016614,GO:0016616,GO:0016999,GO:0017144,GO:0019318,GO:0019362,GO:0019637,GO:0019660,GO:0019664,GO:0019666,GO:0019693,GO:0019752,GO:0032787,GO:0034308,GO:0034641,GO:0036094,GO:0043167,GO:0043168,GO:0043436,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046483,GO:0046496,GO:0048037,GO:0050662,GO:0050896,GO:0051186,GO:0051287,GO:0055086,GO:0055114,GO:0070404,GO:0071704,GO:0072521,GO:0072524,GO:0097159,GO:1901135,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901615
EggNOG free text desc.D-isomer specific 2-hydroxyacid dehydrogenase
EggNOG OGs2IXS0@203682,COG1052@1,COG1052@2
EC1.1.1.28
COG Functional cat.C
BiGG ReactioniJN746.PP_1649,iPC815.YPO2329,iSFV_1184.SFV_1805,iSF_1195.SF1814,iSFxv_1172.SFxv_2031,iS_1188.S1459
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.4937685-CDS-M-pyrifera_M_contig112074:331..5861622815634.4937685-CDS-M-pyrifera_M_contig112074:331..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112074 332..586 -
1692277497.6620035-CDS-M-pyrifera_M_contig112074:331..5861692277497.6620035-CDS-M-pyrifera_M_contig112074:331..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112074 332..586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112074.2531.1prot_M-pyrifera_M_contig112074.2531.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112074 332..586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112074.2531.1

>prot_M-pyrifera_M_contig112074.2531.1 ID=prot_M-pyrifera_M_contig112074.2531.1|Name=mRNA_M-pyrifera_M_contig112074.2531.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=85bp
TGQIGYAGLDVYEEEAGIFFHDISNQVLDDDVLARLMTFNNVVITSHQAF
LTNEALDNIAETTYANIDEFFAGKRGAELTHHVG*
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mRNA from alignment at M-pyrifera_M_contig112074:332..586-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112074.2531.1 ID=mRNA_M-pyrifera_M_contig112074.2531.1|Name=mRNA_M-pyrifera_M_contig112074.2531.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=255bp|location=Sequence derived from alignment at M-pyrifera_M_contig112074:332..586- (Macrocystis pyrifera P11B4 male)
ACCGGCCAGATCGGCTACGCCGGCCTGGATGTCTATGAAGAAGAGGCGGG
CATTTTCTTCCACGATATCTCAAATCAGGTTCTCGACGACGACGTACTGG
CCCGACTGATGACATTCAACAATGTCGTTATCACTTCGCATCAGGCATTC
CTGACGAATGAGGCCCTGGATAACATCGCTGAAACCACCTACGCCAACAT
CGATGAATTTTTCGCCGGCAAACGAGGCGCCGAGCTGACGCACCACGTCG
GGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112074:332..586-

>mRNA_M-pyrifera_M_contig112074.2531.1 ID=mRNA_M-pyrifera_M_contig112074.2531.1|Name=mRNA_M-pyrifera_M_contig112074.2531.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=510bp|location=Sequence derived from alignment at M-pyrifera_M_contig112074:332..586- (Macrocystis pyrifera P11B4 male)
ACCGGCCAGATCGGCTACGCCGGCCTGGATGTCTATGAAGAAGAGGCGGG
CATTTTCTTCCACGATATCTCAAATCAGGTTCTCGACGACGACGTACTGG
CCCGACTGATGACATTCAACAATGTCGTTATCACTTCGCATCAGGCATTC
CTGACGAATGAGGCCCTGGATAACATCGCTGAAACCACCTACGCCAACAT
CGATGAATTTTTCGCCGGCAAACGAGGCGCCGAGCTGACGCACCACGTCG
GGTAAACCGGCCAGATCGGCTACGCCGGCCTGGATGTCTATGAAGAAGAG
GCGGGCATTTTCTTCCACGATATCTCAAATCAGGTTCTCGACGACGACGT
ACTGGCCCGACTGATGACATTCAACAATGTCGTTATCACTTCGCATCAGG
CATTCCTGACGAATGAGGCCCTGGATAACATCGCTGAAACCACCTACGCC
AACATCGATGAATTTTTCGCCGGCAAACGAGGCGCCGAGCTGACGCACCA
CGTCGGGTAA
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