mRNA_M-pyrifera_M_contig112074.2530.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112074.2530.1
Unique NamemRNA_M-pyrifera_M_contig112074.2530.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig112074.2530.1 vs. uniprot
Match: A0A2E7KJC5_9PLAN (Uncharacterized protein n=6 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KJC5_9PLAN)

HSP 1 Score: 214 bits (545), Expect = 4.150e-69
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 APIWRPPELADAWIQVDDIDLVLPGGETGVDDEALCVAFRILHNLAYYLHNVPHQDSRPVTLDKITVEPETGYWFIDVISEYGSVWSVEFFGNEVRHTG 297
            APIWRPPELADAWIQVDDIDLVLPGGETGVDDEALCVAFRILHNLAYYLHNVPHQDSRPVTLDKITVEPETGYWFIDVISEYGSVWSVEFFGNEVRHTG
Sbjct:  114 APIWRPPELADAWIQVDDIDLVLPGGETGVDDEALCVAFRILHNLAYYLHNVPHQDSRPVTLDKITVEPETGYWFIDVISEYGSVWSVEFFGNEVRHTG 212
[Close]
BLAST of mRNA_M-pyrifera_M_contig112074.2530.1 vs. uniprot
Match: A0A518FPZ3_9PLAN (Uncharacterized protein n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FPZ3_9PLAN)

HSP 1 Score: 165 bits (417), Expect = 1.130e-49
Identity = 75/96 (78.12%), Postives = 84/96 (87.50%), Query Frame = 1 
Query:   10 WRPPELADAWIQVDDIDLVLPGGETGVDDEALCVAFRILHNLAYYLHNVPHQDSRPVTLDKITVEPETGYWFIDVISEYGSVWSVEFFGNEVRHTG 297
            WRPPELADAWI+++DIDL LPG ++GVDD+ LC AFRILHNLAYYLHNVPHQDSRPV+L  ITVE E  +W  DVISEYGSVWSVEFFG+EVR TG
Sbjct:  116 WRPPELADAWIRMEDIDLTLPGNDSGVDDDGLCEAFRILHNLAYYLHNVPHQDSRPVSLHGITVEREPQHWTADVISEYGSVWSVEFFGDEVRQTG 211
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112074.2530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2E7KJC5_9PLAN4.150e-69100.00Uncharacterized protein n=6 Tax=Gimesia TaxID=1649... [more]
A0A518FPZ3_9PLAN1.130e-4978.13Uncharacterized protein n=1 Tax=Gimesia panareensi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112074contigM-pyrifera_M_contig112074:3..302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.4609091-CDS-M-pyrifera_M_contig112074:2..3021622815634.4609091-CDS-M-pyrifera_M_contig112074:2..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112074 3..302 +
1692277497.6513104-CDS-M-pyrifera_M_contig112074:2..3021692277497.6513104-CDS-M-pyrifera_M_contig112074:2..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112074 3..302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112074.2530.1prot_M-pyrifera_M_contig112074.2530.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112074 3..302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112074.2530.1

>prot_M-pyrifera_M_contig112074.2530.1 ID=prot_M-pyrifera_M_contig112074.2530.1|Name=mRNA_M-pyrifera_M_contig112074.2530.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=100bp
APIWRPPELADAWIQVDDIDLVLPGGETGVDDEALCVAFRILHNLAYYLH
NVPHQDSRPVTLDKITVEPETGYWFIDVISEYGSVWSVEFFGNEVRHTG*
back to top

mRNA from alignment at M-pyrifera_M_contig112074:3..302+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112074.2530.1 ID=mRNA_M-pyrifera_M_contig112074.2530.1|Name=mRNA_M-pyrifera_M_contig112074.2530.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig112074:3..302+ (Macrocystis pyrifera P11B4 male)
GCTCCTATCTGGCGTCCGCCGGAGTTAGCCGATGCGTGGATTCAGGTCGA
TGATATTGACCTCGTGCTGCCGGGAGGTGAGACTGGCGTCGATGATGAAG
CGCTCTGCGTCGCCTTTCGCATTCTACACAACCTGGCTTACTACCTGCAT
AACGTCCCCCACCAGGATTCGCGTCCGGTCACCTTGGATAAAATAACGGT
CGAACCCGAGACGGGATACTGGTTTATAGATGTGATCAGCGAGTATGGCA
GCGTGTGGTCGGTGGAATTTTTCGGGAATGAGGTGCGGCACACCGGTTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig112074:3..302+

>mRNA_M-pyrifera_M_contig112074.2530.1 ID=mRNA_M-pyrifera_M_contig112074.2530.1|Name=mRNA_M-pyrifera_M_contig112074.2530.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=600bp|location=Sequence derived from alignment at M-pyrifera_M_contig112074:3..302+ (Macrocystis pyrifera P11B4 male)
GCTCCTATCTGGCGTCCGCCGGAGTTAGCCGATGCGTGGATTCAGGTCGA
TGATATTGACCTCGTGCTGCCGGGAGGTGAGACTGGCGTCGATGATGAAG
CGCTCTGCGTCGCCTTTCGCATTCTACACAACCTGGCTTACTACCTGCAT
AACGTCCCCCACCAGGATTCGCGTCCGGTCACCTTGGATAAAATAACGGT
CGAACCCGAGACGGGATACTGGTTTATAGATGTGATCAGCGAGTATGGCA
GCGTGTGGTCGGTGGAATTTTTCGGGAATGAGGTGCGGCACACCGGTTAA
GCTCCTATCTGGCGTCCGCCGGAGTTAGCCGATGCGTGGATTCAGGTCGA
TGATATTGACCTCGTGCTGCCGGGAGGTGAGACTGGCGTCGATGATGAAG
CGCTCTGCGTCGCCTTTCGCATTCTACACAACCTGGCTTACTACCTGCAT
AACGTCCCCCACCAGGATTCGCGTCCGGTCACCTTGGATAAAATAACGGT
CGAACCCGAGACGGGATACTGGTTTATAGATGTGATCAGCGAGTATGGCA
GCGTGTGGTCGGTGGAATTTTTCGGGAATGAGGTGCGGCACACCGGTTAA
back to top