mRNA_M-pyrifera_M_contig112060.2524.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112060.2524.1
Unique NamemRNA_M-pyrifera_M_contig112060.2524.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112060.2524.1 vs. uniprot
Match: L8GQC5_ACACA (Clu domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GQC5_ACACA)

HSP 1 Score: 151 bits (381), Expect = 2.860e-39
Identity = 81/161 (50.31%), Postives = 102/161 (63.35%), Query Frame = 1
Query:   16 GDLEGHIGSDGKFYVLDFARAFPAEAPARSHREPRAVYYKLLRPETVRSNETPLSSDAFTTWGKLDSRFQEHNKDVLKATLKLLLQEVPTFADSLD--VHAEEMTGANLVTELHRAGINIRHLGQVRHKCKSRKAKDILLLEMVVRVVKNYLRERMRETMR 492
            GDLEGH G DG+FYV+D AR FPAEAP R+    R ++Y LLRPE VRSN  PLSSDAF+ W K D   + HN +VL+AT +L    +P  A  LD  +  +     NL  E HR G+N+RHLG+VR    +   K+ LL EM  RV KN LR+ +R+ MR
Sbjct:  630 GDLEGHKGKDGRFYVVDLARLFPAEAP-RASESLRCIFYNLLRPELVRSNSVPLSSDAFSQWAKGDPESRVHNMEVLEATRRLHESVIPQLASELDRMLKPDNALQVNLSYEFHRRGVNMRHLGKVRKHATNEFTKEFLLTEMTARVFKNKLRQLLRDRMR 789          
BLAST of mRNA_M-pyrifera_M_contig112060.2524.1 vs. uniprot
Match: A0A152A2T4_9MYCE (Histidine kinase A n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A2T4_9MYCE)

HSP 1 Score: 140 bits (353), Expect = 1.660e-35
Identity = 73/164 (44.51%), Postives = 100/164 (60.98%), Query Frame = 1
Query:    4 LASCGDLEGHIGSDGKFYVLDFARAFPAEAPARSHREPRAVYYKLLRPETVRSNETPLSSDAFTTWGKLDSRFQEHNKDVLKATLKLLLQEVPTFADSLDV-HAEEMTGANLVTELHRAGINIRHLGQVRHKCKSRKAKDILLLEMVVRVVKNYLRERMRETMR 492
            L SCGD+EGH+G DGK Y+LDFAR FP +     +  P  +Y +L+RPE V+SN  PLSSDA T WGK D    EHN +V +A+ +LLL+ +P FA ++D+    E    +L  ELHR GIN RHLG +R     +  +  LL E++ R +K  +    R  M+
Sbjct:  494 LYSCGDIEGHVGLDGKAYLLDFARVFPPQMKIIENAPPSHLY-ELIRPELVKSNPKPLSSDALTGWGKFDQMAPEHNYEVKEASFRLLLKVIPDFAKTIDIMDNSEKRELHLTQELHRVGINCRHLGMIRRNVTCKSMRKTLLSEIMARTMKCEIMSNFRSKMK 656          
BLAST of mRNA_M-pyrifera_M_contig112060.2524.1 vs. uniprot
Match: UPI000644BD45 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644BD45)

HSP 1 Score: 140 bits (352), Expect = 2.260e-35
Identity = 72/152 (47.37%), Postives = 96/152 (63.16%), Query Frame = 1
Query:    4 LASCGDLEGHIGSDGKFYVLDFARAFPAEAPARSHREPRAVYYKLLRPETVRSNETPLSSDAFTTWGKLDSRFQEHNKDVLKATLKLLLQEVPTFADSLD-VHAEEMTGANLVTELHRAGINIRHLGQVRHKCKSRKAKDILLLEMVVRVVK 456
            L  CGD+EGHIGSDG FY+LDFAR FP       H  P  +Y +L+RPE V+SN  PLSSDAFT WGK D    EHN +V +A+ +L LQ +P FA  L  +   +M   +L  ELHR GIN R++G VR   + +  + ++L E++ R +K
Sbjct:  492 LHCCGDIEGHIGSDGHFYLLDFARVFPPILKLNDHSPPSHLY-ELIRPELVKSNTKPLSSDAFTGWGKFDPNTHEHNYEVKEASYRLFLQVIPKFASFLQSLEITDMNELHLTQELHRVGINCRYMGLVRRLVRCQSLRRMMLGEILARTMK 642          
BLAST of mRNA_M-pyrifera_M_contig112060.2524.1 vs. uniprot
Match: F0ZDJ6_DICPU (Clu domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZDJ6_DICPU)

HSP 1 Score: 138 bits (347), Expect = 1.070e-34
Identity = 72/164 (43.90%), Postives = 101/164 (61.59%), Query Frame = 1
Query:    1 ELASCGDLEGHIGSDGKFYVLDFARAFPAEAPARSHREPRAVYYKLLRPETVRSNETPLSSDAFTTWGKLDSRFQEHNKDVLKATLKLLLQEVPTFADSLDVHAEEMTGANLVTELHRAGINIRHLGQVRHKCKSRKAKDILLLEMVVRVVKNYLRERMRETMR 492
            +L SCGD+EGHIGSD KFY+LDFAR FP +        P  ++ +L RPE V+SN TPLSSDA T WGK D    EHN +V +A+ +L L+ +P  ++ L+    +    +L  E+HR G+N RHLG VR K K +  +  LL E++ R +K+ +    R  M+
Sbjct:  654 KLYSCGDIEGHIGSDDKFYLLDFARVFPPQMRLFDKGPPTHLF-ELTRPELVKSNSTPLSSDALTGWGKFDPLALEHNNEVKEASFRLFLKVIPELSNYLNNIEMDKREIHLTQEIHRVGVNCRHLGLVRRKVKCKSIRKFLLDEIMARTMKSEIMALFRSKMK 816          
BLAST of mRNA_M-pyrifera_M_contig112060.2524.1 vs. uniprot
Match: A0A8J4PUV0_9MYCE (Clu domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PUV0_9MYCE)

HSP 1 Score: 137 bits (345), Expect = 1.980e-34
Identity = 71/164 (43.29%), Postives = 102/164 (62.20%), Query Frame = 1
Query:    4 LASCGDLEGHIGSDGKFYVLDFARAFPAEAPARSHREPRAVYYKLLRPETVRSNETPLSSDAFTTWGKLDSRFQEHNKDVLKATLKLLLQEVPTFADSLDV-HAEEMTGANLVTELHRAGINIRHLGQVRHKCKSRKAKDILLLEMVVRVVKNYLRERMRETMR 492
            L SCGD+EGHIGSDG FY+LDFAR FP +     +  P  +Y +L+RPE V+SN+ PLSSD+ T WGK D    EHN +V +A+ +L L+ +P  A+ L +  + E    +L  ELHR GIN RH G +R K + +  +  +L E++ R +K+ +    R  M+
Sbjct:  564 LHSCGDIEGHIGSDGNFYLLDFARVFPPQMKLFDNSPPSHLY-ELIRPELVKSNDRPLSSDSLTGWGKFDVNAVEHNYEVKEASFRLFLKVIPDLANRLTILDSSEKREIHLTQELHRVGINCRHFGLLRRKVQCKSMRKAILDEIMARTMKSEIMALFRSKMK 726          
BLAST of mRNA_M-pyrifera_M_contig112060.2524.1 vs. uniprot
Match: D3B1V9_POLPP (Histidine kinase A n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B1V9_POLPP)

HSP 1 Score: 135 bits (340), Expect = 9.330e-34
Identity = 70/153 (45.75%), Postives = 95/153 (62.09%), Query Frame = 1
Query:    4 LASCGDLEGHIGSDGKFYVLDFARAFPAEAPARSHREPRAVYYKLLRPETVRSNETPLSSDAFTTWGKLDSRFQEHNKDVLKATLKLLLQEVPTFADSLD-VHAEEMTGANLVTELHRAGINIRHLGQVRHKCKSRKAKDILLLEMVVRVVKN 459
            L SCGD+EGHIGSDG FY+LDFAR FP       +  P  +Y +L+RPE V+SN  PLSSDA T WGK D+   EHN +V +A+ +L LQ +P F   LD +   E    +   ELHR GIN R+ G +R + +    + +LL E++ R +K+
Sbjct:  578 LHSCGDIEGHIGSDGNFYLLDFARVFPPIVKINDNGPPSHLY-ELIRPELVKSNHKPLSSDALTGWGKFDTNAVEHNYEVKEASYRLFLQVMPRFIKYLDSLEVCEKRELHFTQELHRVGINCRYFGLIRRELRCSSLRKLLLAEILARTMKS 729          
BLAST of mRNA_M-pyrifera_M_contig112060.2524.1 vs. uniprot
Match: UPI000645091F (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000645091F)

HSP 1 Score: 134 bits (338), Expect = 1.730e-33
Identity = 71/153 (46.41%), Postives = 95/153 (62.09%), Query Frame = 1
Query:    4 LASCGDLEGHIGSDGKFYVLDFARAFPAEAPARSHREPRAVYYKLLRPETVRSNETPLSSDAFTTWGKLDSRFQEHNKDVLKATLKLLLQEVPTFADSLD-VHAEEMTGANLVTELHRAGINIRHLGQVRHKCKSRKAKDILLLEMVVRVVKN 459
            L SCGD+EGHIG+DG FY+LDFAR FP       +  P  +Y +LLRPE V+SN  PLSSDA T WGK D    EHN +V +A+ KL L+ +P F   LD +   E    +L  ELHR GIN R+LG ++ +      + I+L EM+ R +++
Sbjct:  467 LHSCGDIEGHIGNDGNFYLLDFARVFPPVVKIIENGPPSHLY-ELLRPELVKSNSKPLSSDALTGWGKFDPNSSEHNYEVKEASYKLFLKVIPKFVKYLDGLDMCEKKELHLTQELHRVGINCRYLGLIKRQVHCPCVRRIILCEMLARTIRS 618          
BLAST of mRNA_M-pyrifera_M_contig112060.2524.1 vs. uniprot
Match: L8GUF9_ACACA (Tetratricopeptide repeat domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GUF9_ACACA)

HSP 1 Score: 134 bits (336), Expect = 3.080e-33
Identity = 70/169 (41.42%), Postives = 109/169 (64.50%), Query Frame = 1
Query:    1 ELASCGDLEGHIGSDGKFYVLDFARAFPAEAPARSHREPRAVY-YKLLRPETVRSNETPLSSDAFTTWGKLDSRFQEHNKDVLKATLKLLLQEVPTFADSLDV---HAEE-MTGANLVTELHRAGINIRHLGQVRHKCKSRKAKDILLLEMVVRVVKNYLRERMRETMR 492
            EL +  D+EGH G DG++YV+DFAR FP E P+ ++ + + +  + LLRPE V+SN+ PL+ DAFT W K D     +N  V +AT +LL + +P  A  LD     AE+  T  +L+  +H AG+N+RHLG +R K  + + +D++++EM+ RVV+  L+E+ R+  R
Sbjct:  143 ELYAPVDIEGHKGLDGRYYVVDFARTFPPERPSPANMKRKGIILFNLLRPELVKSNDVPLTPDAFTLWAKADENKDLYNTRVTEATRRLLHELIPAVAAKLDEMQRSAEKGSTHLDLIEVIHAAGVNVRHLGYIRRKALNEQVQDMIMVEMIARVVRKQLQEKFRKKTR 311          
BLAST of mRNA_M-pyrifera_M_contig112060.2524.1 vs. uniprot
Match: Q54YP3_DICDI (Clu domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q54YP3_DICDI)

HSP 1 Score: 132 bits (333), Expect = 8.110e-33
Identity = 73/164 (44.51%), Postives = 102/164 (62.20%), Query Frame = 1
Query:    4 LASCGDLEGHIGSDGKFYVLDFARAFPAEAPARSHREPRAVYYKLLRPETVRSNETPLSSDAFTTWGKLDSRFQEHNKDVLKATLKLLLQEVPTFADSLD-VHAEEMTGANLVTELHRAGINIRHLGQVRHKCKSRKAKDILLLEMVVRVVKNYLRERMRETMR 492
            L SCGD+EGHIGSD K Y+LDFAR FP +        P  ++ +L+RPE V+SN  PLSSDA T WGK DS   EHN  V +A+ +L L+ +P  A  L+ +   E+   +L  ELHR G+N RH+G VR   K++  + ILL E++ R +K+ + +  R  M+
Sbjct:  574 LYSCGDIEGHIGSDSKRYLLDFARVFPPQMKLFDKGPPTHLF-ELIRPELVKSNSVPLSSDALTGWGKFDSLALEHNNQVKEASFRLFLKVIPELAHYLNNLDKREI---HLTQELHRVGVNCRHMGLVRRYVKNKYVRKILLDEIMARTMKSEMMQLFRSKMK 733          
BLAST of mRNA_M-pyrifera_M_contig112060.2524.1 vs. uniprot
Match: F4PYX7_CAVFA (Histidine kinase A n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PYX7_CAVFA)

HSP 1 Score: 130 bits (326), Expect = 7.100e-32
Identity = 69/153 (45.10%), Postives = 94/153 (61.44%), Query Frame = 1
Query:    4 LASCGDLEGHIGSDGKFYVLDFARAFPAEAPARSHREPRAVYYKLLRPETVRSNETPLSSDAFTTWGKLDSRFQEHNKDVLKATLKLLLQEVPTFADSLD-VHAEEMTGANLVTELHRAGINIRHLGQVRHKCKSRKAKDILLLEMVVRVVKN 459
            L SCGD+EGHIGSDG  Y+LDFAR +P       +  P  +Y +L+RPE V+SN+ PLSSDA T WGK D    EHN +V +A+ +L LQ +P F   LD + + E    +L  ELHR GIN R+LG  R        + I+L E++ R +++
Sbjct:  632 LHSCGDIEGHIGSDGLHYLLDFARVYPPIVKINDNTPPSHLY-ELIRPELVKSNKNPLSSDALTGWGKFDPNSTEHNYEVKEASYRLFLQVIPKFVYHLDHMDSMEKRELHLTQELHRMGINCRYLGLARRLFTCNSLRKIILGEILARTMRS 783          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112060.2524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
L8GQC5_ACACA2.860e-3950.31Clu domain-containing protein n=1 Tax=Acanthamoeba... [more]
A0A152A2T4_9MYCE1.660e-3544.51Histidine kinase A n=1 Tax=Tieghemostelium lacteum... [more]
UPI000644BD452.260e-3547.37hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F0ZDJ6_DICPU1.070e-3443.90Clu domain-containing protein n=1 Tax=Dictyosteliu... [more]
A0A8J4PUV0_9MYCE1.980e-3443.29Clu domain-containing protein n=1 Tax=Polysphondyl... [more]
D3B1V9_POLPP9.330e-3445.75Histidine kinase A n=1 Tax=Polysphondylium pallidu... [more]
UPI000645091F1.730e-3346.41hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
L8GUF9_ACACA3.080e-3341.42Tetratricopeptide repeat domain containing protein... [more]
Q54YP3_DICDI8.110e-3344.51Clu domain-containing protein n=1 Tax=Dictyosteliu... [more]
F4PYX7_CAVFA7.100e-3245.10Histidine kinase A n=1 Tax=Cavenderia fasciculata ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112060contigM-pyrifera_M_contig112060:76..567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue2.5e-30
Seed eggNOG ortholog5786.XP_003285476.1
KEGG koko:K10273,ko:K10275,ko:K10279,ko:K10282
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Translation initiation factor eIF3 subunit 135
EggNOG OGs3XFK3@554915,KOG1839@1,KOG1839@2759,KOG1947@1,KOG1947@2759
COG Functional cat.S
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04121
Exons1
Model size492
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.1513846-CDS-M-pyrifera_M_contig112060:75..5671622815634.1513846-CDS-M-pyrifera_M_contig112060:75..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112060 76..567 +
1692277497.5222874-CDS-M-pyrifera_M_contig112060:75..5671692277497.5222874-CDS-M-pyrifera_M_contig112060:75..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112060 76..567 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112060.2524.1prot_M-pyrifera_M_contig112060.2524.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112060 76..567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112060.2524.1

>prot_M-pyrifera_M_contig112060.2524.1 ID=prot_M-pyrifera_M_contig112060.2524.1|Name=mRNA_M-pyrifera_M_contig112060.2524.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=164bp
ELASCGDLEGHIGSDGKFYVLDFARAFPAEAPARSHREPRAVYYKLLRPE
TVRSNETPLSSDAFTTWGKLDSRFQEHNKDVLKATLKLLLQEVPTFADSL
DVHAEEMTGANLVTELHRAGINIRHLGQVRHKCKSRKAKDILLLEMVVRV
VKNYLRERMRETMR
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mRNA from alignment at M-pyrifera_M_contig112060:76..567+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112060.2524.1 ID=mRNA_M-pyrifera_M_contig112060.2524.1|Name=mRNA_M-pyrifera_M_contig112060.2524.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig112060:76..567+ (Macrocystis pyrifera P11B4 male)
GAGCTGGCTAGCTGTGGTGATCTGGAGGGACACATTGGCAGCGATGGCAA GTTCTATGTGCTCGACTTTGCAAGAGCATTCCCTGCAGAGGCACCAGCAA GGAGCCACCGAGAGCCAAGGGCAGTTTACTACAAACTGCTCCGACCTGAA ACTGTGAGGAGCAATGAGACTCCACTGAGCTCTGACGCCTTCACAACGTG GGGAAAGCTCGATTCTCGTTTCCAAGAGCACAATAAGGACGTGCTCAAGG CCACTCTCAAGCTCCTCCTTCAAGAGGTACCTACTTTCGCTGATAGCCTC GATGTTCATGCAGAGGAGATGACAGGCGCCAACCTCGTGACTGAGCTCCA CAGGGCAGGCATCAACATTCGCCACCTTGGTCAGGTGCGACACAAGTGCA AGAGCAGGAAGGCCAAGGACATTCTCTTGCTCGAGATGGTGGTGAGGGTG GTGAAGAATTACCTCAGAGAGAGAATGAGAGAGACCATGAGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112060:76..567+

>mRNA_M-pyrifera_M_contig112060.2524.1 ID=mRNA_M-pyrifera_M_contig112060.2524.1|Name=mRNA_M-pyrifera_M_contig112060.2524.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig112060:76..567+ (Macrocystis pyrifera P11B4 male)
GAGCTGGCTAGCTGTGGTGATCTGGAGGGACACATTGGCAGCGATGGCAA
GTTCTATGTGCTCGACTTTGCAAGAGCATTCCCTGCAGAGGCACCAGCAA
GGAGCCACCGAGAGCCAAGGGCAGTTTACTACAAACTGCTCCGACCTGAA
ACTGTGAGGAGCAATGAGACTCCACTGAGCTCTGACGCCTTCACAACGTG
GGGAAAGCTCGATTCTCGTTTCCAAGAGCACAATAAGGACGTGCTCAAGG
CCACTCTCAAGCTCCTCCTTCAAGAGGTACCTACTTTCGCTGATAGCCTC
GATGTTCATGCAGAGGAGATGACAGGCGCCAACCTCGTGACTGAGCTCCA
CAGGGCAGGCATCAACATTCGCCACCTTGGTCAGGTGCGACACAAGTGCA
AGAGCAGGAAGGCCAAGGACATTCTCTTGCTCGAGATGGTGGTGAGGGTG
GTGAAGAATTACCTCAGAGAGAGAATGAGAGAGACCATGAGAGAGCTGGC
TAGCTGTGGTGATCTGGAGGGACACATTGGCAGCGATGGCAAGTTCTATG
TGCTCGACTTTGCAAGAGCATTCCCTGCAGAGGCACCAGCAAGGAGCCAC
CGAGAGCCAAGGGCAGTTTACTACAAACTGCTCCGACCTGAAACTGTGAG
GAGCAATGAGACTCCACTGAGCTCTGACGCCTTCACAACGTGGGGAAAGC
TCGATTCTCGTTTCCAAGAGCACAATAAGGACGTGCTCAAGGCCACTCTC
AAGCTCCTCCTTCAAGAGGTACCTACTTTCGCTGATAGCCTCGATGTTCA
TGCAGAGGAGATGACAGGCGCCAACCTCGTGACTGAGCTCCACAGGGCAG
GCATCAACATTCGCCACCTTGGTCAGGTGCGACACAAGTGCAAGAGCAGG
AAGGCCAAGGACATTCTCTTGCTCGAGATGGTGGTGAGGGTGGTGAAGAA
TTACCTCAGAGAGAGAATGAGAGAGACCATGAGA
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