mRNA_M-pyrifera_M_contig112042.2521.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112042.2521.1
Unique NamemRNA_M-pyrifera_M_contig112042.2521.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112042.2521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112042contigM-pyrifera_M_contig112042:99..515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.0293407-CDS-M-pyrifera_M_contig112042:98..5151622815634.0293407-CDS-M-pyrifera_M_contig112042:98..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112042 99..515 +
1692277497.4643297-CDS-M-pyrifera_M_contig112042:98..5151692277497.4643297-CDS-M-pyrifera_M_contig112042:98..515Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112042 99..515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112042.2521.1prot_M-pyrifera_M_contig112042.2521.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112042 99..515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112042.2521.1

>prot_M-pyrifera_M_contig112042.2521.1 ID=prot_M-pyrifera_M_contig112042.2521.1|Name=mRNA_M-pyrifera_M_contig112042.2521.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=139bp
DEPCAGNDCSNHGVCVQPGYCTCSSGWGGEDCSVADQLVVSGTTLDAHLE
TYSWQYYHIVTGAADEGLLVEVTQTSDLGDIDLYLGLNSYPTTHSYIYKD
SSSTSRTMSAQINDVREGTYYVGLYGYCAADYEIFFSLT
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mRNA from alignment at M-pyrifera_M_contig112042:99..515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112042.2521.1 ID=mRNA_M-pyrifera_M_contig112042.2521.1|Name=mRNA_M-pyrifera_M_contig112042.2521.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=417bp|location=Sequence derived from alignment at M-pyrifera_M_contig112042:99..515+ (Macrocystis pyrifera P11B4 male)
GACGAGCCGTGCGCAGGCAACGACTGCTCGAACCACGGCGTGTGCGTGCA
GCCAGGCTACTGCACATGCAGCAGCGGATGGGGAGGCGAGGACTGCTCTG
TAGCAGACCAGCTGGTGGTGTCTGGAACCACTTTGGATGCGCACTTGGAA
ACCTACAGCTGGCAGTACTACCATATCGTCACCGGCGCTGCTGACGAGGG
ACTGTTGGTGGAAGTGACGCAGACGAGCGACTTGGGAGACATTGATCTCT
ACCTGGGTCTGAACTCTTATCCCACTACACACTCATACATCTACAAGGAC
TCCTCTTCCACTTCCCGCACCATGTCTGCCCAAATCAACGATGTGCGTGA
GGGAACTTACTATGTGGGCCTCTATGGCTACTGTGCGGCCGACTACGAGA
TCTTTTTCTCCCTCACT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112042:99..515+

>mRNA_M-pyrifera_M_contig112042.2521.1 ID=mRNA_M-pyrifera_M_contig112042.2521.1|Name=mRNA_M-pyrifera_M_contig112042.2521.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=834bp|location=Sequence derived from alignment at M-pyrifera_M_contig112042:99..515+ (Macrocystis pyrifera P11B4 male)
GACGAGCCGTGCGCAGGCAACGACTGCTCGAACCACGGCGTGTGCGTGCA
GCCAGGCTACTGCACATGCAGCAGCGGATGGGGAGGCGAGGACTGCTCTG
TAGCAGACCAGCTGGTGGTGTCTGGAACCACTTTGGATGCGCACTTGGAA
ACCTACAGCTGGCAGTACTACCATATCGTCACCGGCGCTGCTGACGAGGG
ACTGTTGGTGGAAGTGACGCAGACGAGCGACTTGGGAGACATTGATCTCT
ACCTGGGTCTGAACTCTTATCCCACTACACACTCATACATCTACAAGGAC
TCCTCTTCCACTTCCCGCACCATGTCTGCCCAAATCAACGATGTGCGTGA
GGGAACTTACTATGTGGGCCTCTATGGCTACTGTGCGGCCGACTACGAGA
TCTTTTTCTCCCTCACTGACGAGCCGTGCGCAGGCAACGACTGCTCGAAC
CACGGCGTGTGCGTGCAGCCAGGCTACTGCACATGCAGCAGCGGATGGGG
AGGCGAGGACTGCTCTGTAGCAGACCAGCTGGTGGTGTCTGGAACCACTT
TGGATGCGCACTTGGAAACCTACAGCTGGCAGTACTACCATATCGTCACC
GGCGCTGCTGACGAGGGACTGTTGGTGGAAGTGACGCAGACGAGCGACTT
GGGAGACATTGATCTCTACCTGGGTCTGAACTCTTATCCCACTACACACT
CATACATCTACAAGGACTCCTCTTCCACTTCCCGCACCATGTCTGCCCAA
ATCAACGATGTGCGTGAGGGAACTTACTATGTGGGCCTCTATGGCTACTG
TGCGGCCGACTACGAGATCTTTTTCTCCCTCACT
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