mRNA_M-pyrifera_M_contig112039.2520.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112039.2520.1
Unique NamemRNA_M-pyrifera_M_contig112039.2520.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112039.2520.1 vs. uniprot
Match: C3Z087_BRAFL (ERAP1_C domain-containing protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z087_BRAFL)

HSP 1 Score: 137 bits (346), Expect = 7.070e-39
Identity = 68/133 (51.13%), Postives = 92/133 (69.17%), Query Frame = 1 
Query:    1 LRALGASKDVALLQRTLDFGLSEEVRSQDLIYVYASVAANLSGRAMAWKFLQDHWDDFTSKLDGTGFILARIVGSLTSVFSSTARADEVEKFFAEHPAPMAERTIQQSLESIRSKASWVARDAKDVEEFLAAQ 399
            LR+LG+     L+QR L+F LS EVRSQD ++V     ++L GR +AWKF+QD WD+  ++  G GF+LAR+V   TS F   ARA EVE FF  HPAP AERT+QQS E+IR  A+W+ARDA  + ++L+ +
Sbjct:   34 LRSLGSVSQPELIQRVLEFALSSEVRSQDTVFVIGGATSSLKGRELAWKFVQDRWDELHTRYQG-GFLLARLVQFSTSGFVEEARAREVEDFFKLHPAPAAERTVQQSCENIRLNAAWLARDAASISDYLSTR 165
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BLAST of mRNA_M-pyrifera_M_contig112039.2520.1 vs. uniprot
Match: A0A8J9ZAA0_BRALA (NPEPPS protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9ZAA0_BRALA)

HSP 1 Score: 139 bits (351), Expect = 9.450e-36
Identity = 68/133 (51.13%), Postives = 93/133 (69.92%), Query Frame = 1 
Query:    1 LRALGASKDVALLQRTLDFGLSEEVRSQDLIYVYASVAANLSGRAMAWKFLQDHWDDFTSKLDGTGFILARIVGSLTSVFSSTARADEVEKFFAEHPAPMAERTIQQSLESIRSKASWVARDAKDVEEFLAAQ 399
            LR+LG+     L+QR L+F LS EVRSQD ++V     ++L GR +AWKF+QD WD+  ++  G GF+LAR+V   TS F   +RA EVE+FF  HPAP AERT+QQS E+IR  A+W+ARDA  + E+L+ +
Sbjct:  789 LRSLGSVSQPELIQRVLEFALSSEVRSQDTVFVIGGATSSLKGRELAWKFVQDRWDELHTRYQG-GFLLARLVQFSTSGFVEESRAREVEEFFKRHPAPAAERTVQQSCENIRLNAAWLARDAASISEYLSTR 920
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BLAST of mRNA_M-pyrifera_M_contig112039.2520.1 vs. uniprot
Match: A0A6P4Y696_BRABE (Aminopeptidase n=3 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Y696_BRABE)

HSP 1 Score: 139 bits (350), Expect = 1.290e-35
Identity = 68/130 (52.31%), Postives = 92/130 (70.77%), Query Frame = 1 
Query:    1 LRALGASKDVALLQRTLDFGLSEEVRSQDLIYVYASVAANLSGRAMAWKFLQDHWDDFTSKLDGTGFILARIVGSLTSVFSSTARADEVEKFFAEHPAPMAERTIQQSLESIRSKASWVARDAKDVEEFL 390
            LR+LG+     L+QR LDF LS EVRSQD ++V     ++L GR +AWKF+QD WD+  ++  G GF+LAR+V   TS F   +RA EVE+FF +HPAP AERT+QQS E+IR  A+W+ARDA ++  +L
Sbjct:  787 LRSLGSVSQPQLIQRVLDFALSSEVRSQDTVFVIGGATSSLKGRELAWKFVQDRWDELHTRYQG-GFLLARLVQFSTSGFVEESRAREVEEFFRQHPAPAAERTVQQSCENIRLNAAWLARDAGNISNYL 915
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BLAST of mRNA_M-pyrifera_M_contig112039.2520.1 vs. uniprot
Match: A0A6U4KU51_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4KU51_HEMAN)

HSP 1 Score: 133 bits (334), Expect = 1.630e-35
Identity = 68/130 (52.31%), Postives = 88/130 (67.69%), Query Frame = 1 
Query:    1 LRALGASKDVALLQRTLDFGLSEEVRSQDLIYVYASVAANLSGRAMAWKFLQDHWDDFTSKLDGTGFILARIVGSLTSVFSSTARADEVEKFFAEHPAPMAERTIQQSLESIRSKASWVARDAKDVEEFL 390
            LRALG +K+  L+QR L   +   +RSQD+ YV+ ++A N +G A++WKFLQD+W           F+LARIV S TS F+S ARA EVE FF +H AP AER IQQ+LE IRS A W+ RDA  V+E+L
Sbjct:  170 LRALGYAKEEKLIQRLLAMSIDGSIRSQDVFYVFGTLANNRAGAALSWKFLQDNWSTIIEMFASGQFLLARIVKSATSCFASQARAAEVEAFFKDHEAPGAERAIQQALEVIRSNAGWLERDAASVDEWL 299
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BLAST of mRNA_M-pyrifera_M_contig112039.2520.1 vs. uniprot
Match: A0A7S0WB32_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WB32_9CRYP)

HSP 1 Score: 133 bits (335), Expect = 2.210e-35
Identity = 68/132 (51.52%), Postives = 89/132 (67.42%), Query Frame = 1 
Query:    1 LRALGASKDVALLQRTLDFGLSEEVRSQDLIYVYASVAANLSGRAMAWKFLQDHWDDFTSKLDGTGFILARIVGSLTSVFSSTARADEVEKFFAEHPAPMAERTIQQSLESIRSKASWVARDAKDVEEFLAA 396
            LRALG ++D AL+QR L       VRSQD+ Y++ ++A+N +G A++WK+LQD+W           F+LARIV S TS F+S ARA EVE FF  H AP AER IQQ+LE IRS A+W+ RD K V+ +L A
Sbjct:  200 LRALGYARDGALIQRLLSMSTDGSVRSQDVFYIFGTLASNRAGAALSWKYLQDNWATIIEMFASGQFLLARIVKSATSCFASHARASEVEAFFQSHEAPGAERAIQQALEVIRSNAAWLERDGKSVDAWLQA 331
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BLAST of mRNA_M-pyrifera_M_contig112039.2520.1 vs. uniprot
Match: UPI001601C64C (LOW QUALITY PROTEIN: puromycin-sensitive aminopeptidase-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601C64C)

HSP 1 Score: 137 bits (346), Expect = 4.500e-35
Identity = 68/133 (51.13%), Postives = 92/133 (69.17%), Query Frame = 1 
Query:    1 LRALGASKDVALLQRTLDFGLSEEVRSQDLIYVYASVAANLSGRAMAWKFLQDHWDDFTSKLDGTGFILARIVGSLTSVFSSTARADEVEKFFAEHPAPMAERTIQQSLESIRSKASWVARDAKDVEEFLAAQ 399
            LR+LG+     L+QR L+F LS EVRSQD ++V     ++L GR +AWKF+QD WD+  ++  G GF+LAR+V   TS F   ARA EVE FF  HPAP AERT+QQS E+IR  A+W+ARDA  + ++L+ +
Sbjct:  839 LRSLGSVSQPELIQRVLEFALSSEVRSQDTVFVIGGATSSLKGRELAWKFVQDRWDELHTRYQG-GFLLARLVQFSTSGFVEEARAREVEDFFKLHPAPAAERTVQQSCENIRLNAAWLARDAASISDYLSTR 970
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BLAST of mRNA_M-pyrifera_M_contig112039.2520.1 vs. uniprot
Match: A0A194PVA5_PAPXU (Aminopeptidase n=6 Tax=Papilio TaxID=7145 RepID=A0A194PVA5_PAPXU)

HSP 1 Score: 134 bits (338), Expect = 5.330e-34
Identity = 64/129 (49.61%), Postives = 91/129 (70.54%), Query Frame = 1 
Query:    4 RALGASKDVALLQRTLDFGLSEEVRSQDLIYVYASVAANLSGRAMAWKFLQDHWDDFTSKLDGTGFILARIVGSLTSVFSSTARADEVEKFFAEHPAPMAERTIQQSLESIRSKASWVARDAKDVEEFL 390
            RALGA KD  LL+R LDF +S+EVRSQD ++V  SVA + +GR +AW+F +DHW +F  +  G GF+LAR+V S T  F+S A A E+E+FF  H +P  ER++QQ+LE++R  A+W+ RD    + +L
Sbjct:  773 RALGAVKDPELLKRVLDFAISDEVRSQDTVFVIVSVAVSKNGRDLAWQFFKDHWQEFMDRYQG-GFLLARLVKSTTENFASEASAQEIEEFFRTHHSPGTERSVQQALETVRLNAAWLRRDLASTDAYL 900
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BLAST of mRNA_M-pyrifera_M_contig112039.2520.1 vs. uniprot
Match: UPI001040034F (puromycin-sensitive aminopeptidase isoform X1 n=2 Tax=Ostrinia furnacalis TaxID=93504 RepID=UPI001040034F)

HSP 1 Score: 134 bits (338), Expect = 5.360e-34
Identity = 66/131 (50.38%), Postives = 90/131 (68.70%), Query Frame = 1 
Query:    4 RALGASKDVALLQRTLDFGLSEEVRSQDLIYVYASVAANLSGRAMAWKFLQDHWDDFTSKLDGTGFILARIVGSLTSVFSSTARADEVEKFFAEHPAPMAERTIQQSLESIRSKASWVARDAKDVEEFLAA 396
            RALGA +D ALL R LDF LS+EVRSQD ++V  SVA + +GR +AW+F +DHW +F  +  G GF+LAR+V S T  F+S A A E+E FF  H +P  ER++QQ+LE++R  A+W+ RD      +L A
Sbjct:  817 RALGAVRDPALLTRVLDFALSDEVRSQDTVFVVVSVAVSRNGRDLAWQFFKDHWQEFMDRYQG-GFLLARLVKSTTENFASEAAAQEIEAFFRAHHSPGTERSVQQALETVRLNAAWLRRDLASATAYLQA 946
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BLAST of mRNA_M-pyrifera_M_contig112039.2520.1 vs. uniprot
Match: UPI0006793288 (aminopeptidase M1 isoform X2 n=1 Tax=Papilio xuthus TaxID=66420 RepID=UPI0006793288)

HSP 1 Score: 134 bits (338), Expect = 5.370e-34
Identity = 64/129 (49.61%), Postives = 91/129 (70.54%), Query Frame = 1 
Query:    4 RALGASKDVALLQRTLDFGLSEEVRSQDLIYVYASVAANLSGRAMAWKFLQDHWDDFTSKLDGTGFILARIVGSLTSVFSSTARADEVEKFFAEHPAPMAERTIQQSLESIRSKASWVARDAKDVEEFL 390
            RALGA KD  LL+R LDF +S+EVRSQD ++V  SVA + +GR +AW+F +DHW +F  +  G GF+LAR+V S T  F+S A A E+E+FF  H +P  ER++QQ+LE++R  A+W+ RD    + +L
Sbjct:  825 RALGAVKDPELLKRVLDFAISDEVRSQDTVFVIVSVAVSKNGRDLAWQFFKDHWQEFMDRYQG-GFLLARLVKSTTENFASEASAQEIEEFFRTHHSPGTERSVQQALETVRLNAAWLRRDLASTDAYL 952
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BLAST of mRNA_M-pyrifera_M_contig112039.2520.1 vs. uniprot
Match: A0A6J2KJQ9_BOMMA (Aminopeptidase n=3 Tax=Bombyx TaxID=7090 RepID=A0A6J2KJQ9_BOMMA)

HSP 1 Score: 134 bits (337), Expect = 7.310e-34
Identity = 65/129 (50.39%), Postives = 93/129 (72.09%), Query Frame = 1 
Query:    4 RALGASKDVALLQRTLDFGLSEEVRSQDLIYVYASVAANLSGRAMAWKFLQDHWDDFTSKLDGTGFILARIVGSLTSVFSSTARADEVEKFFAEHPAPMAERTIQQSLESIRSKASWVARDAKDVEEFL 390
            RALGA +D ALL+R LDF +S+EVRSQD ++V  SVA + +GR +AW+F +DH+ +F  +  G GF+LAR+V S T  F+S A A E+E+FF+ H +P AER++QQ+LES+R  A+W+ RD      +L
Sbjct:  813 RALGAVRDPALLRRVLDFAISDEVRSQDTVFVIVSVAVSRNGRDLAWQFFKDHFQEFIERYQG-GFLLARLVKSTTENFASEAAAQEIEEFFSTHESPGAERSVQQALESVRLNAAWLRRDLASTATYL 940
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112039.2520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C3Z087_BRAFL7.070e-3951.13ERAP1_C domain-containing protein (Fragment) n=1 T... [more]
A0A8J9ZAA0_BRALA9.450e-3651.13NPEPPS protein n=1 Tax=Branchiostoma lanceolatum T... [more]
A0A6P4Y696_BRABE1.290e-3552.31Aminopeptidase n=3 Tax=Branchiostoma belcheri TaxI... [more]
A0A6U4KU51_HEMAN1.630e-3552.31Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S0WB32_9CRYP2.210e-3551.52Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
UPI001601C64C4.500e-3551.13LOW QUALITY PROTEIN: puromycin-sensitive aminopept... [more]
A0A194PVA5_PAPXU5.330e-3449.61Aminopeptidase n=6 Tax=Papilio TaxID=7145 RepID=A0... [more]
UPI001040034F5.360e-3450.38puromycin-sensitive aminopeptidase isoform X1 n=2 ... [more]
UPI00067932885.370e-3449.61aminopeptidase M1 isoform X2 n=1 Tax=Papilio xuthu... [more]
A0A6J2KJQ9_BOMMA7.310e-3450.39Aminopeptidase n=3 Tax=Bombyx TaxID=7090 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112039contigM-pyrifera_M_contig112039:6..407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score138.3
Seed ortholog evalue2.7e-30
Seed eggNOG ortholog7739.XP_002597923.1
KEGG koko:K08776
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000578,GO:0000793,GO:0000922,GO:0003002,GO:0003674,GO:0003824,GO:0004177,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005819,GO:0005856,GO:0006508,GO:0006518,GO:0006807,GO:0007049,GO:0007275,GO:0007350,GO:0007351,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008595,GO:0009056,GO:0009790,GO:0009792,GO:0009798,GO:0009880,GO:0009948,GO:0009952,GO:0009987,GO:0010564,GO:0010720,GO:0015630,GO:0016787,GO:0019538,GO:0022402,GO:0022414,GO:0030588,GO:0030590,GO:0032501,GO:0032502,GO:0034641,GO:0035282,GO:0043170,GO:0043171,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043900,GO:0043902,GO:0044237,GO:0044238,GO:0044248,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0044770,GO:0044771,GO:0045595,GO:0045597,GO:0046662,GO:0048518,GO:0048522,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0051094,GO:0051179,GO:0051235,GO:0051239,GO:0051240,GO:0051321,GO:0051445,GO:0051640,GO:0051641,GO:0051642,GO:0051651,GO:0051657,GO:0051661,GO:0051726,GO:0060281,GO:0060282,GO:0060284,GO:0061842,GO:0065007,GO:0065008,GO:0070006,GO:0070011,GO:0071704,GO:0072686,GO:0097431,GO:0140096,GO:1900193,GO:1900195,GO:1901564,GO:1901565,GO:1901575,GO:1903046,GO:1903429,GO:1903431,GO:1903538,GO:1905879,GO:1905881,GO:1990947,GO:2000241,GO:2000243
EggNOG free text desc.metalloaminopeptidase activity
EggNOG OGs38CFG@33154,3BADC@33208,3CW5S@33213,486H0@7711,COG0308@1,KOG1046@2759
COG Functional cat.EO
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons1
Model size402
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.9800382-CDS-M-pyrifera_M_contig112039:5..4071622815633.9800382-CDS-M-pyrifera_M_contig112039:5..407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112039 6..407 +
1692277497.4520998-CDS-M-pyrifera_M_contig112039:5..4071692277497.4520998-CDS-M-pyrifera_M_contig112039:5..407Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112039 6..407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112039.2520.1prot_M-pyrifera_M_contig112039.2520.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112039 6..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112039.2520.1

>prot_M-pyrifera_M_contig112039.2520.1 ID=prot_M-pyrifera_M_contig112039.2520.1|Name=mRNA_M-pyrifera_M_contig112039.2520.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=134bp
LRALGASKDVALLQRTLDFGLSEEVRSQDLIYVYASVAANLSGRAMAWKF
LQDHWDDFTSKLDGTGFILARIVGSLTSVFSSTARADEVEKFFAEHPAPM
AERTIQQSLESIRSKASWVARDAKDVEEFLAAQ*
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mRNA from alignment at M-pyrifera_M_contig112039:6..407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112039.2520.1 ID=mRNA_M-pyrifera_M_contig112039.2520.1|Name=mRNA_M-pyrifera_M_contig112039.2520.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig112039:6..407+ (Macrocystis pyrifera P11B4 male)
CTCCGTGCTCTGGGCGCTTCCAAGGACGTGGCACTGCTCCAGCGCACCCT
CGATTTCGGTCTCTCCGAGGAGGTTCGCTCTCAAGACCTGATCTACGTCT
ACGCCTCGGTTGCTGCCAACCTGAGCGGCCGAGCAATGGCCTGGAAGTTC
CTTCAGGACCACTGGGACGACTTCACCTCCAAGCTCGACGGTACTGGCTT
CATCCTCGCCCGCATCGTTGGCAGCCTTACCTCTGTGTTCTCAAGCACCG
CAAGGGCAGACGAGGTGGAGAAATTCTTTGCCGAGCACCCTGCGCCTATG
GCCGAGCGCACCATTCAACAGAGTCTGGAGTCCATTCGCAGCAAGGCATC
CTGGGTCGCAAGAGACGCCAAGGACGTCGAGGAGTTCCTCGCTGCCCAGT
AA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112039:6..407+

>mRNA_M-pyrifera_M_contig112039.2520.1 ID=mRNA_M-pyrifera_M_contig112039.2520.1|Name=mRNA_M-pyrifera_M_contig112039.2520.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=804bp|location=Sequence derived from alignment at M-pyrifera_M_contig112039:6..407+ (Macrocystis pyrifera P11B4 male)
CTCCGTGCTCTGGGCGCTTCCAAGGACGTGGCACTGCTCCAGCGCACCCT
CGATTTCGGTCTCTCCGAGGAGGTTCGCTCTCAAGACCTGATCTACGTCT
ACGCCTCGGTTGCTGCCAACCTGAGCGGCCGAGCAATGGCCTGGAAGTTC
CTTCAGGACCACTGGGACGACTTCACCTCCAAGCTCGACGGTACTGGCTT
CATCCTCGCCCGCATCGTTGGCAGCCTTACCTCTGTGTTCTCAAGCACCG
CAAGGGCAGACGAGGTGGAGAAATTCTTTGCCGAGCACCCTGCGCCTATG
GCCGAGCGCACCATTCAACAGAGTCTGGAGTCCATTCGCAGCAAGGCATC
CTGGGTCGCAAGAGACGCCAAGGACGTCGAGGAGTTCCTCGCTGCCCAGT
AACTCCGTGCTCTGGGCGCTTCCAAGGACGTGGCACTGCTCCAGCGCACC
CTCGATTTCGGTCTCTCCGAGGAGGTTCGCTCTCAAGACCTGATCTACGT
CTACGCCTCGGTTGCTGCCAACCTGAGCGGCCGAGCAATGGCCTGGAAGT
TCCTTCAGGACCACTGGGACGACTTCACCTCCAAGCTCGACGGTACTGGC
TTCATCCTCGCCCGCATCGTTGGCAGCCTTACCTCTGTGTTCTCAAGCAC
CGCAAGGGCAGACGAGGTGGAGAAATTCTTTGCCGAGCACCCTGCGCCTA
TGGCCGAGCGCACCATTCAACAGAGTCTGGAGTCCATTCGCAGCAAGGCA
TCCTGGGTCGCAAGAGACGCCAAGGACGTCGAGGAGTTCCTCGCTGCCCA
GTAA
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