mRNA_M-pyrifera_M_contig112034.2519.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112034.2519.1
Unique NamemRNA_M-pyrifera_M_contig112034.2519.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112034.2519.1 vs. uniprot
Match: A0A819PQX3_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A819PQX3_9BILA)

HSP 1 Score: 117 bits (294), Expect = 1.890e-30
Identity = 58/140 (41.43%), Postives = 86/140 (61.43%), Query Frame = 1
Query:   10 TLWHGDFKISNLFVKQPTANSPDGKVYVIDWQWFGKGNPAIDAVYFLYTSLREEDLCHIPSLLEGYFAQFLANLPAEKAGAYSLAQFRHHADVVLVDFCVYTICSKWSVMTLTDFKQYEQKQKDGLHLRSSAHMELILRD 429
            TL HGDFK++N+F+     N  +G+VY IDWQWFG GN AID  YF+ TS+ E  + +   L+  Y+      + +E   +Y   +F     +  +DF +YT+  KWS+M   D + Y+Q+QKDGLHLRS  HM+ +L++
Sbjct:   47 TLIHGDFKVTNIFIDN---NQIEGQVYAIDWQWFGVGNIAIDVAYFIATSIHENVIENSIELVNYYY-----EILSENGVSYEWERFWKAYQICWIDFFIYTVTGKWSLMRPNDVELYKQEQKDGLHLRSYPHMKHLLKE 178          
BLAST of mRNA_M-pyrifera_M_contig112034.2519.1 vs. uniprot
Match: A0A2P6NMM1_9EUKA (Hormonally up-regulated neu tumor-associated kinase-like n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NMM1_9EUKA)

HSP 1 Score: 114 bits (284), Expect = 1.630e-26
Identity = 64/142 (45.07%), Postives = 82/142 (57.75%), Query Frame = 1
Query:    7 RTLWHGDFKISNLFVKQPTANSPDGKVYVIDWQWFGKGNPAIDAVYFLYTSLREEDLCHIPSLLEGYFAQFLANLPAEKAGAYSLAQFRHHADVVLVDFCVYTICSKWSVMTLTDFKQYEQKQKDGLHLRSSAHMELILRDA 432
            +TL HGD+KISNLFV       P+G VY IDWQWFG G  A+D  YF+ TSL    L      L  YF     N+  +    +++ Q R    +  +DF VYT+ +KWS MT  D + Y + +KDGLHLRS AHM  +L DA
Sbjct:  787 KTLVHGDYKISNLFVP------PEGGVYAIDWQWFGMGPGALDVSYFIATSLSPSLLHRDEHFLFLYFETLRENVELKD---FTMEQLRRQYRLCWLDFFVYTVVAKWSRMTPDDVETYRRGKKDGLHLRSYAHMIKMLHDA 919          
BLAST of mRNA_M-pyrifera_M_contig112034.2519.1 vs. uniprot
Match: A0A2P6N9S2_9EUKA (DNA repair protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N9S2_9EUKA)

HSP 1 Score: 114 bits (284), Expect = 1.680e-26
Identity = 64/142 (45.07%), Postives = 82/142 (57.75%), Query Frame = 1
Query:    7 RTLWHGDFKISNLFVKQPTANSPDGKVYVIDWQWFGKGNPAIDAVYFLYTSLREEDLCHIPSLLEGYFAQFLANLPAEKAGAYSLAQFRHHADVVLVDFCVYTICSKWSVMTLTDFKQYEQKQKDGLHLRSSAHMELILRDA 432
            +TL HGD+KISNLFV       P+G VY IDWQWFG G  A+D  YF+ TSL    L      L  YF     N+  +    +++ Q R    +  +DF VYT+ +KWS MT  D + Y + +KDGLHLRS AHM  +L DA
Sbjct: 1198 KTLVHGDYKISNLFVP------PEGGVYAIDWQWFGMGPGALDVSYFIATSLSPSLLHRDEHFLFLYFETLRENVELKD---FTMEQLRRQYRLCWLDFFVYTVVAKWSRMTPDDVETYRRGKKDGLHLRSYAHMIKMLHDA 1330          
BLAST of mRNA_M-pyrifera_M_contig112034.2519.1 vs. uniprot
Match: A0A817T012_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817T012_9BILA)

HSP 1 Score: 107 bits (266), Expect = 2.060e-26
Identity = 53/139 (38.13%), Postives = 84/139 (60.43%), Query Frame = 1
Query:    7 RTLWHGDFKISNLFVKQPTANSPDGKVYVIDWQWFGKGNPAIDAVYFLYTSLREEDLCHIPSLLEGYFAQFLANLPAEKAGAYSLAQFRHHADVVLVDFCVYTICSKWSVMTLTDFKQYEQKQKDGLHLRSSAHMELIL 423
            RT+ HGD+KI+N+F+ +   NS + ++Y IDWQW+G G+ A+D   F+ TS+ E     I   LE    +F   +  +   +YS  QF     +  ++F +YT+   WSVM   D + Y++++KDGLH+RS AHM+ +L
Sbjct:   31 RTIIHGDYKIANIFIDR---NSDENQIYAIDWQWYGIGHAAMDVASFIATSVHENT---IEDSLE--LVRFYHKVLTDNGISYSWEQFWQAYQICWIEFFIYTVVGLWSVMQANDIESYKKEEKDGLHVRSYAHMKNLL 161          
BLAST of mRNA_M-pyrifera_M_contig112034.2519.1 vs. uniprot
Match: A0A815U7X1_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815U7X1_9BILA)

HSP 1 Score: 108 bits (271), Expect = 2.540e-25
Identity = 56/145 (38.62%), Postives = 85/145 (58.62%), Query Frame = 1
Query:    7 RTLWHGDFKISNLFVKQPT-----ANSPDGKVYVIDWQWFGKGNPAIDAVYFLYTSLREEDLCHIPSLLEGYFAQFLAN-LPAEKAGAYSLAQFRHHADVVLVDFCVYTICSKWSVMTLTDFKQYEQKQKDGLHLRSSAHMELIL 423
            RTL HGDFKI+N+F+          ++    VY IDWQWFG GN A+D  +F+ TS+ E  + +   LL  Y+   L N + AE+   +S  +F  +  +  +DF ++T+ +KW  M   D + Y++++KDGLHLRS  HM  +L
Sbjct:  250 RTLIHGDFKITNIFINHNNHDFYAESTTTEHVYAIDWQWFGIGNVALDVAHFIATSIHENSIQNSLELLHYYYRTLLENGISAEQ---HSWEKFWKNFQLCWIDFFIFTVVAKWGTMKPNDIELYQKEEKDGLHLRSYPHMRKLL 391          
BLAST of mRNA_M-pyrifera_M_contig112034.2519.1 vs. uniprot
Match: A0A821TER0_9BILA (Hypothetical protein n=5 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A821TER0_9BILA)

HSP 1 Score: 104 bits (259), Expect = 9.170e-25
Identity = 52/139 (37.41%), Postives = 81/139 (58.27%), Query Frame = 1
Query:    7 RTLWHGDFKISNLFVKQPTANSPDGKVYVIDWQWFGKGNPAIDAVYFLYTSLREEDLCHIPSLLEGYFAQFLANLPAEKAGAYSLAQFRHHADVVLVDFCVYTICSKWSVMTLTDFKQYEQKQKDGLHLRSSAHMELIL 423
            RT+ HGD+KI+N+F+ +   NS + ++Y IDWQW G G+ A+D   F+ TS+ E  +     L+  Y    + N       AYS  QF     +  ++F +Y +   WSVM   D + Y++++KDGLH+RS AHM+ +L
Sbjct:   89 RTIIHGDYKIANIFIDR---NSAESQIYAIDWQWCGIGHVAMDVASFIATSVHENTIEDSLELVRFYHKVLIDN-----GVAYSWEQFWQAYQICWIEFFIYAVVGLWSVMQANDIESYKKEEKDGLHVRSYAHMKNLL 219          
BLAST of mRNA_M-pyrifera_M_contig112034.2519.1 vs. uniprot
Match: A0A820LJV0_9BILA (Hypothetical protein n=4 Tax=Rotaria socialis TaxID=392032 RepID=A0A820LJV0_9BILA)

HSP 1 Score: 100 bits (249), Expect = 1.580e-23
Identity = 50/139 (35.97%), Postives = 84/139 (60.43%), Query Frame = 1
Query:    7 RTLWHGDFKISNLFVKQPTANSPDGKVYVIDWQWFGKGNPAIDAVYFLYTSLREEDLCHIPSLLEGYFAQFLANLPAEKAGAYSLAQFRHHADVVLVDFCVYTICSKWSVMTLTDFKQYEQKQKDGLHLRSSAHMELIL 423
            RT+ HGD+KISN+F+     NS + ++Y IDWQW G G+ A+D  YF+ TS+ E  +     L+     +F  N+  +   +YS  QF    ++  ++  +YT+ + WSVM + D + Y++++K GLH+ S +HM+ +L
Sbjct:   63 RTIIHGDYKISNIFIDH---NSTERQIYAIDWQWCGIGHAAMDVAYFIATSVHENTIGDSWELV-----RFYHNVLKDNGISYSWEQFWQAYEISWIEHFIYTVVAFWSVMQVEDIELYKKEEKHGLHICSYSHMKNLL 193          
BLAST of mRNA_M-pyrifera_M_contig112034.2519.1 vs. uniprot
Match: A0A822D326_9BILA (Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A822D326_9BILA)

HSP 1 Score: 102 bits (254), Expect = 8.390e-23
Identity = 51/139 (36.69%), Postives = 80/139 (57.55%), Query Frame = 1
Query:    7 RTLWHGDFKISNLFVKQPTANSPDGKVYVIDWQWFGKGNPAIDAVYFLYTSLREEDLCHIPSLLEGYFAQFLANLPAEKAGAYSLAQFRHHADVVLVDFCVYTICSKWSVMTLTDFKQYEQKQKDGLHLRSSAHMELIL 423
            RT+ HGD+KI+N+F+ +   NS + ++Y IDWQW G G+ A+D   F+ TS+ E  +     L+  Y    + N       AY   QF     +  ++F +Y +   WSVM   D + Y++++KDGLH+RS AHM+ +L
Sbjct:  285 RTIIHGDYKIANIFIDR---NSTESQIYAIDWQWCGIGHVAMDVASFIATSVHENTIEDSLELVRFYHKVLIDN-----GVAYPWEQFWQAYQICWIEFFIYAVVGLWSVMQANDIESYKKEEKDGLHVRSYAHMKNLL 415          
BLAST of mRNA_M-pyrifera_M_contig112034.2519.1 vs. uniprot
Match: A0A7S4I9Q2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I9Q2_9EUKA)

HSP 1 Score: 87.0 bits (214), Expect = 3.410e-17
Identity = 50/143 (34.97%), Postives = 74/143 (51.75%), Query Frame = 1
Query:    1 RFRTLWHGDFKISNLFVKQPTANSPDGK-------VYVIDWQWFGKGNPAIDAVYFLYTSLREEDLCHIPSLLEGYFAQFLANLPAEKAGAYSLAQFRHHADVVLVDFCVYTICSKWSVMTLTDFKQYEQKQKDGLHLRSSAH 408
            + +T+ HGD+KISN+F+ + TA     K       VYVIDWQW G G  A+D  Y+L TS   + +    S ++     + + L  +    Y+  +      +  VDF VY I  KW+ M  +DF   + + KDGLH+RS  H
Sbjct:  325 KLKTIVHGDYKISNIFLDRRTATQTKAKYSHHSDSVYVIDWQWVGLGIGAVDVAYYLATSTVLDTVQK--SSMKKLVKLYHSILVEKGVKNYTFKEMWMDFRLAFVDFVVYVISCKWTAMMPSDFLSNQAQLKDGLHIRSLVH 465          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112034.2519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A819PQX3_9BILA1.890e-3041.43Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 ... [more]
A0A2P6NMM1_9EUKA1.630e-2645.07Hormonally up-regulated neu tumor-associated kinas... [more]
A0A2P6N9S2_9EUKA1.680e-2645.07DNA repair protein n=1 Tax=Planoprotostelium fungi... [more]
A0A817T012_9BILA2.060e-2638.13Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A815U7X1_9BILA2.540e-2538.62Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A821TER0_9BILA9.170e-2537.41Hypothetical protein n=5 Tax=Rotaria sp. Silwood1 ... [more]
A0A820LJV0_9BILA1.580e-2335.97Hypothetical protein n=4 Tax=Rotaria socialis TaxI... [more]
A0A822D326_9BILA8.390e-2336.69Hypothetical protein n=2 Tax=Rotaria sp. Silwood1 ... [more]
A0A7S4I9Q2_9EUKA3.410e-1734.97Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112034contigM-pyrifera_M_contig112034:106..546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue3.7e-09
Seed eggNOG ortholog65071.PYU1_T004834
Preferred nameBPNT1
KEGG rclassRC00078
KEGG koko:K01082
KEGG ReactionR00188,R00508
KEGG Pathwayko00920,ko01100,ko01120,ko01130,map00920,map01100,map01120,map01130
Hectar predicted targeting categoryother localisation
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004441,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008252,GO:0008441,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0016311,GO:0016312,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0019693,GO:0032501,GO:0032502,GO:0033865,GO:0033875,GO:0034032,GO:0034035,GO:0034641,GO:0042578,GO:0043167,GO:0043169,GO:0043436,GO:0044237,GO:0044238,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0048731,GO:0048856,GO:0050427,GO:0052745,GO:0055086,GO:0071704,GO:0072521,GO:1901135,GO:1901360,GO:1901564
EggNOG free text desc.3'(2'),5'-bisphosphate nucleotidase. Source PGD
EggNOG OGs1MBPS@121069,COG1218@1,KOG3099@2759
EC3.1.3.7
COG Functional cat.F
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Exons1
Model size441
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.9447467-CDS-M-pyrifera_M_contig112034:105..5461622815633.9447467-CDS-M-pyrifera_M_contig112034:105..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112034 106..546 -
1692277497.432146-CDS-M-pyrifera_M_contig112034:105..5461692277497.432146-CDS-M-pyrifera_M_contig112034:105..546Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112034 106..546 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112034.2519.1prot_M-pyrifera_M_contig112034.2519.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112034 106..546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112034.2519.1

>prot_M-pyrifera_M_contig112034.2519.1 ID=prot_M-pyrifera_M_contig112034.2519.1|Name=mRNA_M-pyrifera_M_contig112034.2519.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=147bp
RFRTLWHGDFKISNLFVKQPTANSPDGKVYVIDWQWFGKGNPAIDAVYFL
YTSLREEDLCHIPSLLEGYFAQFLANLPAEKAGAYSLAQFRHHADVVLVD
FCVYTICSKWSVMTLTDFKQYEQKQKDGLHLRSSAHMELILRDARAV
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mRNA from alignment at M-pyrifera_M_contig112034:106..546-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112034.2519.1 ID=mRNA_M-pyrifera_M_contig112034.2519.1|Name=mRNA_M-pyrifera_M_contig112034.2519.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=441bp|location=Sequence derived from alignment at M-pyrifera_M_contig112034:106..546- (Macrocystis pyrifera P11B4 male)
CGCTTCCGTACCCTCTGGCACGGCGACTTCAAGATCTCGAACCTCTTCGT CAAGCAGCCGACCGCCAACTCGCCCGACGGCAAGGTGTATGTGATCGACT GGCAGTGGTTCGGCAAGGGCAACCCGGCGATCGACGCCGTGTACTTCCTC TACACCAGCCTCCGCGAGGAGGACCTCTGCCACATCCCCAGCCTGCTGGA GGGCTACTTTGCCCAGTTCCTCGCCAACCTGCCGGCCGAGAAGGCGGGCG CCTACTCCCTCGCCCAGTTCCGGCACCACGCAGACGTGGTCCTCGTCGAC TTCTGCGTGTACACCATCTGCTCCAAGTGGTCCGTCATGACGCTCACCGA CTTCAAGCAGTACGAGCAGAAGCAAAAGGACGGCCTCCACCTCCGCTCGT CCGCCCACATGGAGCTCATCCTCCGCGACGCGCGCGCCGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112034:106..546-

>mRNA_M-pyrifera_M_contig112034.2519.1 ID=mRNA_M-pyrifera_M_contig112034.2519.1|Name=mRNA_M-pyrifera_M_contig112034.2519.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=882bp|location=Sequence derived from alignment at M-pyrifera_M_contig112034:106..546- (Macrocystis pyrifera P11B4 male)
CGCTTCCGTACCCTCTGGCACGGCGACTTCAAGATCTCGAACCTCTTCGT
CAAGCAGCCGACCGCCAACTCGCCCGACGGCAAGGTGTATGTGATCGACT
GGCAGTGGTTCGGCAAGGGCAACCCGGCGATCGACGCCGTGTACTTCCTC
TACACCAGCCTCCGCGAGGAGGACCTCTGCCACATCCCCAGCCTGCTGGA
GGGCTACTTTGCCCAGTTCCTCGCCAACCTGCCGGCCGAGAAGGCGGGCG
CCTACTCCCTCGCCCAGTTCCGGCACCACGCAGACGTGGTCCTCGTCGAC
TTCTGCGTGTACACCATCTGCTCCAAGTGGTCCGTCATGACGCTCACCGA
CTTCAAGCAGTACGAGCAGAAGCAAAAGGACGGCCTCCACCTCCGCTCGT
CCGCCCACATGGAGCTCATCCTCCGCGACGCGCGCGCCGTCCGCTTCCGT
ACCCTCTGGCACGGCGACTTCAAGATCTCGAACCTCTTCGTCAAGCAGCC
GACCGCCAACTCGCCCGACGGCAAGGTGTATGTGATCGACTGGCAGTGGT
TCGGCAAGGGCAACCCGGCGATCGACGCCGTGTACTTCCTCTACACCAGC
CTCCGCGAGGAGGACCTCTGCCACATCCCCAGCCTGCTGGAGGGCTACTT
TGCCCAGTTCCTCGCCAACCTGCCGGCCGAGAAGGCGGGCGCCTACTCCC
TCGCCCAGTTCCGGCACCACGCAGACGTGGTCCTCGTCGACTTCTGCGTG
TACACCATCTGCTCCAAGTGGTCCGTCATGACGCTCACCGACTTCAAGCA
GTACGAGCAGAAGCAAAAGGACGGCCTCCACCTCCGCTCGTCCGCCCACA
TGGAGCTCATCCTCCGCGACGCGCGCGCCGTC
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