mRNA_M-pyrifera_M_contig112029.2517.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112029.2517.1
Unique NamemRNA_M-pyrifera_M_contig112029.2517.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112029.2517.1 vs. uniprot
Match: A0A8J9YMA3_BRALA (SH3KBP1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8J9YMA3_BRALA)

HSP 1 Score: 100 bits (248), Expect = 1.570e-21
Identity = 52/114 (45.61%), Postives = 68/114 (59.65%), Query Frame = 1
Query:  184 PVAKAGPKIRATATYDYAAAEDNELSFDVGDVIEVSKQDPSGWWEGSCKGRTGMFPGNYVEVIAEEAPAPAKAXXXXXXXXAATRKCLVKFDFTAENDDELTIVVGQTIIIVSE 525
            P A+   K+R  A Y YA    +EL  +VGDVIE+ KQ+  GWWEGS  G++G+FP N+VEVI EE     +             K  V FD+ AEN+DELT+ VG+ III S+
Sbjct:  109 PQAEKTRKLRCKAHYSYAPENTDELRLEVGDVIEILKQEEEGWWEGSLNGKSGVFPSNFVEVIKEEDKENIEEQQKEKTASKPVEKAKVLFDYNAENEDELTLKVGEVIIIRSK 222          
BLAST of mRNA_M-pyrifera_M_contig112029.2517.1 vs. uniprot
Match: A0A6P8IYL2_ACTTE (CD2-associated protein-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IYL2_ACTTE)

HSP 1 Score: 78.2 bits (191), Expect = 2.520e-14
Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  211 RATATYDYAAAEDNELSFDVGDVIEVSKQDPSGWWEGSCKGRTGMFPGNYVEVIAEEAPAPAKAXXXXXXXXAATRKCLVKFDFTAENDDELTIVVGQTIIIVSE 525
            RA  T+DY A E++EL   +G +IE    +  GW +G   G+TG+FP N+VE IA EAP  +K          A +K  V FD+ A N+DEL++  G+ I ++ E
Sbjct:    4 RARVTFDYKATENDELDLAIGQIIEDITDEDEGWCKGFLDGKTGLFPNNFVEFIAGEAPPHSKPPSKDSL---AGKKAKVLFDYDALNEDELSLRDGEIIEVICE 105          
BLAST of mRNA_M-pyrifera_M_contig112029.2517.1 vs. uniprot
Match: A0A7R9CL95_TIMCR (Hypothetical protein n=1 Tax=Timema cristinae TaxID=61476 RepID=A0A7R9CL95_TIMCR)

HSP 1 Score: 76.3 bits (186), Expect = 6.030e-14
Identity = 39/107 (36.45%), Postives = 58/107 (54.21%), Query Frame = 1
Query:  205 KIRATATYDYAAAEDNELSFDVGDVIEVSKQDPSGWWEGSCKGRTGMFPGNYVEVIAEEAPAPAKAXXXXXXXXAATRKCLVKFDFTAENDDELTIVVGQTIIIVSE 525
            ++ A   +DY A E +ELS   GD+I   +  P GWWEGS +G+ GMFP N+++V +E     ++A           R+C V F +   N+DEL + V   I +V E
Sbjct:   22 EVEAVVEFDYVAHEPDELSLRKGDIITNIRTQPGGWWEGSLRGKRGMFPDNFIKVQSE-----SEASFQDVTLRRWGRRCRVLFSYQPANEDELALQVNDVIEVVGE 123          
BLAST of mRNA_M-pyrifera_M_contig112029.2517.1 vs. uniprot
Match: A0A7R8USE8_HERIL (Hypothetical protein n=3 Tax=Hermetia illucens TaxID=343691 RepID=A0A7R8USE8_HERIL)

HSP 1 Score: 77.4 bits (189), Expect = 2.320e-13
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 1
Query:  208 IRATATYDYAAAEDNELSFDVGDVIEVSKQDPSGWWEGSC--KGRTGMFPGNYVEVIAEEAPAPAKAXXXXXXXXAATRKCLVKFDFTAENDDELTIVVGQTIIIVSE 525
            + A   YDY+A E +EL    G +I   K  P GWWEG+    GRTGMFP N+V +I  +  +P            A R+C V + +T +N+DEL++ VG  I ++ E
Sbjct:    8 VSAVVDYDYSANEPDELDLVKGAIIHNIKIQPGGWWEGTLASNGRTGMFPDNFVHIIDPDEKSPV---VLRDKSATAHRRCKVIYSYTQQNEDELSLAVGNIIEVLGE 112          
BLAST of mRNA_M-pyrifera_M_contig112029.2517.1 vs. uniprot
Match: UPI001ED8B2D0 (CD2-associated protein isoform X1 n=3 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8B2D0)

HSP 1 Score: 77.4 bits (189), Expect = 2.340e-13
Identity = 41/109 (37.61%), Postives = 60/109 (55.05%), Query Frame = 1
Query:  208 IRATATYDYAAAEDNELSFDVGDVIEVSKQDP-SGWWEGSCKGRTGMFPGNYVEVIAEEAPAPAKAXXXXXXXX--AATRKCLVKFDFTAENDDELTIVVGQTIIIVSE 525
            + A   +DYAA   +EL+   GD+I   K +P +GWWEGS KGR G+FP N+V+VI ++AP  +             + R+C   F +   N+DEL + V   I  +SE
Sbjct:    2 VEALVEFDYAAQAPDELTLKKGDIITAIKTEPGNGWWEGSLKGRRGLFPDNFVKVIKKDAPTESHKDEKNGVVLRSGSKRRCRAIFSYKPVNEDELELKVNDLIEFISE 110          
BLAST of mRNA_M-pyrifera_M_contig112029.2517.1 vs. uniprot
Match: A0A8C2XQH1_CYCLU (SH3 domain containing 19 n=3 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C2XQH1_CYCLU)

HSP 1 Score: 76.6 bits (187), Expect = 4.490e-13
Identity = 37/104 (35.58%), Postives = 53/104 (50.96%), Query Frame = 1
Query:  199 GPKIRATATYDYAAAEDNELSFDVGDVIEVSKQDPSGWWEGSCKGRTGMFPGNYVEVIAEEAPAPAKAXXXXXXXXAATRKCLVKFDFTAENDDELTIVVGQTI 510
            G ++   A +D+    + EL    GDV  + +Q  S W+ G+CKG TG FP NYV+V++       K          +  +C+ KFDF  END+ELT   G  I
Sbjct:  770 GSELEVQAIHDFTPVGEGELGLRAGDVATMVEQVDSDWYRGTCKGSTGFFPTNYVKVLSNSPKPLPKRKARPPSAAVSGPRCVAKFDFAGENDEELTFSEGDVI 873          
BLAST of mRNA_M-pyrifera_M_contig112029.2517.1 vs. uniprot
Match: UPI00155E8823 (SH3 domain-containing protein 19 isoform X1 n=4 Tax=Etheostoma TaxID=54318 RepID=UPI00155E8823)

HSP 1 Score: 76.3 bits (186), Expect = 6.090e-13
Identity = 39/111 (35.14%), Postives = 60/111 (54.05%), Query Frame = 1
Query:  178 AAPVAKAGPKIRATATYDYAAAEDNELSFDVGDVIEVSKQDPSGWWEGSCKGRTGMFPGNYVEVIAEEAPAPAKAXXXXXXXXAATRKCLVKFDFTAENDDELTIVVGQTI 510
            A+P   AG +++  A +D+      EL+   GDV+ + +Q  S W+ G+C+G TG FP NYV+V++       +         A+  +C+ KFDF AEN DEL+   G  I
Sbjct:  734 ASPAGGAGNELKVQAIHDFNPEGPGELALRAGDVVTMVEQLDSEWYTGTCRGSTGFFPVNYVKVLSNSPKPLPERKARPPPATASGPRCVAKFDFEAENSDELSFSEGDVI 844          
BLAST of mRNA_M-pyrifera_M_contig112029.2517.1 vs. uniprot
Match: A0A5N5NI56_PANHP (Uncharacterized protein n=2 Tax=Siluroidei TaxID=1489793 RepID=A0A5N5NI56_PANHP)

HSP 1 Score: 76.3 bits (186), Expect = 6.120e-13
Identity = 36/64 (56.25%), Postives = 45/64 (70.31%), Query Frame = 1
Query:  181 APVAKAGPKIRATATYDYAAAEDNELSFDVGDVIEVSKQDPSGWWEGSCKGRTGMFPGNYVEVI 372
            AP    GP+ RA   Y Y   + +ELSFDVGDVI++ K+DPSGWW G  +G+ G+FPGNYVE I
Sbjct: 1030 APPRPQGPRCRAL--YQYVGQDVDELSFDVGDVIDLIKEDPSGWWTGRMRGKEGLFPGNYVEKI 1091          
BLAST of mRNA_M-pyrifera_M_contig112029.2517.1 vs. uniprot
Match: A0A4Z2FHL1_9TELE (Unconventional myosin-If n=1 Tax=Liparis tanakae TaxID=230148 RepID=A0A4Z2FHL1_9TELE)

HSP 1 Score: 73.2 bits (178), Expect = 7.730e-13
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 1
Query:  199 GPKIRATATYDYAAAEDNELSFDVGDVIEVSKQDPSGWWEGSCKGRTGMFPGNYVEVI 372
            GP+ RA   Y YA  + +E+SF+V DV E+ K DPSGWW G  KG+ G+FPGNYVE I
Sbjct:  142 GPRCRAL--YQYAGQDTDEISFEVNDVFELLKDDPSGWWTGRIKGKEGLFPGNYVEKI 197          
BLAST of mRNA_M-pyrifera_M_contig112029.2517.1 vs. uniprot
Match: C3ZNR9_BRAFL (Uncharacterized protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3ZNR9_BRAFL)

HSP 1 Score: 75.1 bits (183), Expect = 9.430e-13
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = 1
Query:  184 PVAKAGPKIRATATYDYAAAEDNELSFDVGDVIEVSKQDPSGWWEGSCKGRTGMFPGNYVEVIAEE 381
            P A+   K+R  A Y YA    +EL  +VGDVIE+ KQ+  GWWEGS  G++G+FP N+VEVI EE
Sbjct:  117 PQAEKTRKLRCKAQYSYAPENMDELRLEVGDVIEILKQEEEGWWEGSLNGKSGVFPSNFVEVIKEE 182          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112029.2517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J9YMA3_BRALA1.570e-2145.61SH3KBP1 protein n=1 Tax=Branchiostoma lanceolatum ... [more]
A0A6P8IYL2_ACTTE2.520e-1440.00CD2-associated protein-like n=1 Tax=Actinia tenebr... [more]
A0A7R9CL95_TIMCR6.030e-1436.45Hypothetical protein n=1 Tax=Timema cristinae TaxI... [more]
A0A7R8USE8_HERIL2.320e-1337.96Hypothetical protein n=3 Tax=Hermetia illucens Tax... [more]
UPI001ED8B2D02.340e-1337.61CD2-associated protein isoform X1 n=3 Tax=Ischnura... [more]
A0A8C2XQH1_CYCLU4.490e-1335.58SH3 domain containing 19 n=3 Tax=Cyclopterus lumpu... [more]
UPI00155E88236.090e-1335.14SH3 domain-containing protein 19 isoform X1 n=4 Ta... [more]
A0A5N5NI56_PANHP6.120e-1356.25Uncharacterized protein n=2 Tax=Siluroidei TaxID=1... [more]
A0A4Z2FHL1_9TELE7.730e-1356.90Unconventional myosin-If n=1 Tax=Liparis tanakae T... [more]
C3ZNR9_BRAFL9.430e-1353.03Uncharacterized protein n=1 Tax=Branchiostoma flor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112029contigM-pyrifera_M_contig112029:2..529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score77.4
Seed ortholog evalue7.4e-12
Seed eggNOG ortholog7739.XP_002589790.1
Preferred nameSH3KBP1
KEGG koko:K12470
KEGG Pathwayko04144,map04144
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005912,GO:0005924,GO:0005925,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007154,GO:0007267,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0008150,GO:0008360,GO:0009605,GO:0009653,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0010941,GO:0012506,GO:0016020,GO:0016043,GO:0016477,GO:0019899,GO:0022008,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030054,GO:0030055,GO:0030139,GO:0030154,GO:0030182,GO:0030659,GO:0031090,GO:0031175,GO:0031410,GO:0031625,GO:0031982,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0040011,GO:0042058,GO:0042059,GO:0042221,GO:0042330,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043232,GO:0044389,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0048468,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051674,GO:0061024,GO:0061564,GO:0065007,GO:0065008,GO:0070161,GO:0071840,GO:0071944,GO:0097458,GO:0097485,GO:0097708,GO:0120025,GO:0120036,GO:0120039,GO:1901184,GO:1901185
EggNOG free text desc.SH3 domain binding
EggNOG OGs38DPF@33154,3BAC3@33208,3D1ER@33213,482WN@7711,KOG4348@1,KOG4348@2759
COG Functional cat.T
Best tax levelChordata
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size528
Cds size528
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.8613422-CDS-M-pyrifera_M_contig112029:1..5291622815633.8613422-CDS-M-pyrifera_M_contig112029:1..529Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112029 2..529 -
1692277497.3870947-CDS-M-pyrifera_M_contig112029:1..5291692277497.3870947-CDS-M-pyrifera_M_contig112029:1..529Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112029 2..529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112029.2517.1prot_M-pyrifera_M_contig112029.2517.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112029 2..529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112029.2517.1

>prot_M-pyrifera_M_contig112029.2517.1 ID=prot_M-pyrifera_M_contig112029.2517.1|Name=mRNA_M-pyrifera_M_contig112029.2517.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
KPAEYEPYKWNHSHLDTGNSGPKAKKSSKSSRSSSSATSARSVAKSSSRS
AVATATVTQAAPVAKAGPKIRATATYDYAAAEDNELSFDVGDVIEVSKQD
PSGWWEGSCKGRTGMFPGNYVEVIAEEAPAPAKAAPAKAAPAAATRKCLV
KFDFTAENDDELTIVVGQTIIIVSEA
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mRNA from alignment at M-pyrifera_M_contig112029:2..529-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112029.2517.1 ID=mRNA_M-pyrifera_M_contig112029.2517.1|Name=mRNA_M-pyrifera_M_contig112029.2517.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=528bp|location=Sequence derived from alignment at M-pyrifera_M_contig112029:2..529- (Macrocystis pyrifera P11B4 male)
AAGCCGGCCGAGTACGAGCCCTACAAGTGGAACCACTCGCACCTCGACAC GGGCAACAGCGGCCCCAAGGCCAAGAAGAGCAGCAAGTCGTCGCGCTCCT CCTCGTCCGCCACGTCGGCGCGCTCCGTCGCGAAGTCCTCGTCGCGCTCC GCCGTGGCCACGGCCACCGTCACGCAGGCGGCGCCGGTGGCCAAGGCCGG GCCCAAGATCCGCGCCACGGCAACGTACGACTACGCGGCGGCCGAGGACA ACGAACTCAGCTTCGACGTGGGCGACGTGATCGAGGTCTCCAAGCAGGAC CCCAGCGGCTGGTGGGAGGGCTCGTGCAAGGGCCGCACCGGCATGTTCCC GGGCAACTACGTCGAGGTCATCGCCGAGGAGGCGCCCGCGCCCGCCAAGG CCGCGCCCGCCAAGGCCGCGCCCGCCGCCGCCACCCGCAAGTGCCTCGTC AAGTTCGACTTCACGGCGGAGAACGACGACGAGCTCACCATCGTCGTGGG CCAGACCATCATCATCGTCAGCGAGGCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112029:2..529-

>mRNA_M-pyrifera_M_contig112029.2517.1 ID=mRNA_M-pyrifera_M_contig112029.2517.1|Name=mRNA_M-pyrifera_M_contig112029.2517.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig112029:2..529- (Macrocystis pyrifera P11B4 male)
AAGCCGGCCGAGTACGAGCCCTACAAGTGGAACCACTCGCACCTCGACAC
GGGCAACAGCGGCCCCAAGGCCAAGAAGAGCAGCAAGTCGTCGCGCTCCT
CCTCGTCCGCCACGTCGGCGCGCTCCGTCGCGAAGTCCTCGTCGCGCTCC
GCCGTGGCCACGGCCACCGTCACGCAGGCGGCGCCGGTGGCCAAGGCCGG
GCCCAAGATCCGCGCCACGGCAACGTACGACTACGCGGCGGCCGAGGACA
ACGAACTCAGCTTCGACGTGGGCGACGTGATCGAGGTCTCCAAGCAGGAC
CCCAGCGGCTGGTGGGAGGGCTCGTGCAAGGGCCGCACCGGCATGTTCCC
GGGCAACTACGTCGAGGTCATCGCCGAGGAGGCGCCCGCGCCCGCCAAGG
CCGCGCCCGCCAAGGCCGCGCCCGCCGCCGCCACCCGCAAGTGCCTCGTC
AAGTTCGACTTCACGGCGGAGAACGACGACGAGCTCACCATCGTCGTGGG
CCAGACCATCATCATCGTCAGCGAGGCCAAGCCGGCCGAGTACGAGCCCT
ACAAGTGGAACCACTCGCACCTCGACACGGGCAACAGCGGCCCCAAGGCC
AAGAAGAGCAGCAAGTCGTCGCGCTCCTCCTCGTCCGCCACGTCGGCGCG
CTCCGTCGCGAAGTCCTCGTCGCGCTCCGCCGTGGCCACGGCCACCGTCA
CGCAGGCGGCGCCGGTGGCCAAGGCCGGGCCCAAGATCCGCGCCACGGCA
ACGTACGACTACGCGGCGGCCGAGGACAACGAACTCAGCTTCGACGTGGG
CGACGTGATCGAGGTCTCCAAGCAGGACCCCAGCGGCTGGTGGGAGGGCT
CGTGCAAGGGCCGCACCGGCATGTTCCCGGGCAACTACGTCGAGGTCATC
GCCGAGGAGGCGCCCGCGCCCGCCAAGGCCGCGCCCGCCAAGGCCGCGCC
CGCCGCCGCCACCCGCAAGTGCCTCGTCAAGTTCGACTTCACGGCGGAGA
ACGACGACGAGCTCACCATCGTCGTGGGCCAGACCATCATCATCGTCAGC
GAGGCC
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