mRNA_M-pyrifera_M_contig112023.2515.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112023.2515.1
Unique NamemRNA_M-pyrifera_M_contig112023.2515.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112023.2515.1 vs. uniprot
Match: A0A1S3HJF7_LINUN (BCL-6 corepressor-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HJF7_LINUN)

HSP 1 Score: 65.9 bits (159), Expect = 6.410e-11
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    4 EVNCCNTSRQTPLHTAAIEGQLAILLHLLEKKKADVNAKDRDDWTPLHCACHSGHLDAVDQLLSHGASV 210
            ++ C  TS +T LH AA  G   ++LH LE K+ D+NAKD   +TPLH +C  G+L     LL  GA+V
Sbjct:  120 KLTCSKTSGETVLHRAARMGYEDVVLHCLETKRVDINAKDNAGYTPLHESCVRGNLSVAKHLLEFGANV 188          
BLAST of mRNA_M-pyrifera_M_contig112023.2515.1 vs. uniprot
Match: A0A1S3HUI3_LINUN (uncharacterized protein LOC106158321 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HUI3_LINUN)

HSP 1 Score: 65.9 bits (159), Expect = 6.550e-11
Identity = 31/69 (44.93%), Postives = 42/69 (60.87%), Query Frame = 1
Query:    4 EVNCCNTSRQTPLHTAAIEGQLAILLHLLEKKKADVNAKDRDDWTPLHCACHSGHLDAVDQLLSHGASV 210
            ++ C  TS +T LH AA  G   ++LH LE K+ D+NAKD   +TPLH +C  G+L     LL  GA+V
Sbjct: 1333 KLTCSKTSGETVLHRAARMGYEDVVLHCLETKRVDINAKDNAGYTPLHESCVRGNLSVAKHLLEFGANV 1401          
BLAST of mRNA_M-pyrifera_M_contig112023.2515.1 vs. uniprot
Match: A0A1S7LEF2_MAGMO (Uncharacterized protein n=1 Tax=Magnetococcus massalia (strain MO-1) TaxID=451514 RepID=A0A1S7LEF2_MAGMO)

HSP 1 Score: 62.4 bits (150), Expect = 1.010e-10
Identity = 28/58 (48.28%), Postives = 36/58 (62.07%), Query Frame = 1
Query:   37 PLHTAAIEGQLAILLHLLEKKKADVNAKDRDDWTPLHCACHSGHLDAVDQLLSHGASV 210
            PLH AA  G +  L+++LE     V+A+D D WTPLHCA   G L+ V +LL  GA V
Sbjct:   10 PLHDAAGRGDVGQLVYMLEYSALQVDARDNDGWTPLHCAAALGQLETVKELLRRGADV 67          
BLAST of mRNA_M-pyrifera_M_contig112023.2515.1 vs. uniprot
Match: A0A8H5IIN0_9HYPO (Ankyrin repeat-containing protein n=1 Tax=Fusarium phyllophilum TaxID=47803 RepID=A0A8H5IIN0_9HYPO)

HSP 1 Score: 65.1 bits (157), Expect = 1.190e-10
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   37 PLHTAAIEGQLAILLHLLEKKKADVNAKDRDDWTPLHCACHSGHLDAVDQLLSHGASV 210
            PLH AA  G + +L  L++ +K D+  KD D  TPLHCA   GHL+AV+ LL+H ASV
Sbjct:   27 PLHGAATNGDIKMLKVLVKTRKFDIQRKDSDHRTPLHCAAIHGHLEAVELLLAHNASV 84          
BLAST of mRNA_M-pyrifera_M_contig112023.2515.1 vs. uniprot
Match: A0A7L2SBV8_9PASS (ANR49 protein (Fragment) n=2 Tax=Sylvioidea TaxID=2116661 RepID=A0A7L2SBV8_9PASS)

HSP 1 Score: 59.7 bits (143), Expect = 2.100e-9
Identity = 27/54 (50.00%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   49 AAIEGQLAILLHLLEKKKADVNAKDRDDWTPLHCACHSGHLDAVDQLLSHGASV 210
            AA   +L+ +  LL +K A VNA+D D +TPLH A +SGHLD   +L++HGA V
Sbjct:   82 AAENNRLSTVKRLLTEKLAPVNARDEDQYTPLHRAAYSGHLDVAHELVAHGADV 135          
BLAST of mRNA_M-pyrifera_M_contig112023.2515.1 vs. uniprot
Match: K8FCP6_9CHLO (Ankyrin repeat protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8FCP6_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 6.330e-9
Identity = 29/68 (42.65%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    7 VNCCNTSRQTPLHTAAIEGQLAILLHLLEKKKADVNAKDRDDWTPLHCACHSGHLDAVDQLLSHGASV 210
            +N  N   ++ LH AA     A LL  L  + ADVNA+D+  WTPLH A  +GH++A+  LL +GA++
Sbjct:   13 INEKNAYDRSVLHKAAYYSGSATLLENLITQGADVNARDKGAWTPLHLAAKNGHVEALQILLENGANM 80          
BLAST of mRNA_M-pyrifera_M_contig112023.2515.1 vs. uniprot
Match: L8YEM8_TUPCH (Ankyrin repeat domain-containing protein 49 n=1 Tax=Tupaia chinensis TaxID=246437 RepID=L8YEM8_TUPCH)

HSP 1 Score: 58.5 bits (140), Expect = 6.640e-9
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1
Query:   67 LAILLHLLEKKKADVNAKDRDDWTPLHCACHSGHLDAVDQLLSHGASV 210
            L  +  LL +K A VN +D D++TPLH A +SGHLD V +L++HGA V
Sbjct:   22 LTTVRRLLSEKAAQVNTRDEDEYTPLHRAAYSGHLDVVRELIAHGADV 69          
BLAST of mRNA_M-pyrifera_M_contig112023.2515.1 vs. uniprot
Match: UPI0013A5D49A (ankyrin repeat domain-containing protein 49 n=1 Tax=Coturnix japonica TaxID=93934 RepID=UPI0013A5D49A)

HSP 1 Score: 58.2 bits (139), Expect = 7.810e-9
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1
Query:   64 QLAILLHLLEKKKADVNAKDRDDWTPLHCACHSGHLDAVDQLLSHGASV 210
            QL  +  LL +K A VNA+D D +TPLH A +SGHLD   +L++HGA +
Sbjct:   11 QLTTVRRLLSEKLAPVNARDEDQYTPLHRASYSGHLDMAQELVAHGADI 59          
BLAST of mRNA_M-pyrifera_M_contig112023.2515.1 vs. uniprot
Match: A0A7S4KUT5_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4KUT5_GUITH)

HSP 1 Score: 58.5 bits (140), Expect = 8.510e-9
Identity = 31/62 (50.00%), Postives = 37/62 (59.68%), Query Frame = 1
Query:   34 TPLHTAAIEGQ---LAILLHLLEKKKADVNAKDRDDWTPLHCACHSGHLDAVDQLLSHGASV 210
            T LH A+  GQ   + +LL+   K KADVNA D D  TPLH A + GH D +  LL HGA V
Sbjct:   41 TALHVASSSGQRGSVDLLLNNTHKVKADVNAADEDQDTPLHLALYRGHYDVIILLLRHGADV 102          
BLAST of mRNA_M-pyrifera_M_contig112023.2515.1 vs. uniprot
Match: A0A151Z321_9MYCE (PH domain-containing protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z321_9MYCE)

HSP 1 Score: 59.3 bits (142), Expect = 1.290e-8
Identity = 27/60 (45.00%), Postives = 36/60 (60.00%), Query Frame = 1
Query:   31 QTPLHTAAIEGQLAILLHLLEKKKADVNAKDRDDWTPLHCACHSGHLDAVDQLLSHGASV 210
            QTPLH A  EG   ++  LL KK + +  KDR+ WTPLHCA  +GH    + L+S   S+
Sbjct:   36 QTPLHVACFEGYTDVV-SLLVKKGSKIEQKDRNGWTPLHCAASAGHFKCCEVLISKDVSL 94          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112023.2515.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1S3HJF7_LINUN6.410e-1144.93BCL-6 corepressor-like n=1 Tax=Lingula unguis TaxI... [more]
A0A1S3HUI3_LINUN6.550e-1144.93uncharacterized protein LOC106158321 n=1 Tax=Lingu... [more]
A0A1S7LEF2_MAGMO1.010e-1048.28Uncharacterized protein n=1 Tax=Magnetococcus mass... [more]
A0A8H5IIN0_9HYPO1.190e-1051.72Ankyrin repeat-containing protein n=1 Tax=Fusarium... [more]
A0A7L2SBV8_9PASS2.100e-950.00ANR49 protein (Fragment) n=2 Tax=Sylvioidea TaxID=... [more]
K8FCP6_9CHLO6.330e-942.65Ankyrin repeat protein n=1 Tax=Bathycoccus prasino... [more]
L8YEM8_TUPCH6.640e-952.08Ankyrin repeat domain-containing protein 49 n=1 Ta... [more]
UPI0013A5D49A7.810e-951.02ankyrin repeat domain-containing protein 49 n=1 Ta... [more]
A0A7S4KUT5_GUITH8.510e-950.00Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A151Z321_9MYCE1.290e-845.00PH domain-containing protein n=1 Tax=Tieghemosteli... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112023contigM-pyrifera_M_contig112023:129..338 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score63.2
Seed ortholog evalue5.7e-08
Seed eggNOG ortholog5518.FGSG_11680P0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ankyrin repeats (many copies)
EggNOG OGs1FYG0@110618,21E9Y@147550,3A2SY@33154,3P3SM@4751,3R21E@4890,3TRSM@5125,COG0666@1,KOG4177@2759
COG Functional cat.M
Best tax levelNectriaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.781065-CDS-M-pyrifera_M_contig112023:128..3381622815633.781065-CDS-M-pyrifera_M_contig112023:128..338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112023 129..338 +
1692277497.3628342-CDS-M-pyrifera_M_contig112023:128..3381692277497.3628342-CDS-M-pyrifera_M_contig112023:128..338Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112023 129..338 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112023.2515.1prot_M-pyrifera_M_contig112023.2515.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112023 129..338 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112023.2515.1

>prot_M-pyrifera_M_contig112023.2515.1 ID=prot_M-pyrifera_M_contig112023.2515.1|Name=mRNA_M-pyrifera_M_contig112023.2515.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=70bp
LEVNCCNTSRQTPLHTAAIEGQLAILLHLLEKKKADVNAKDRDDWTPLHC
ACHSGHLDAVDQLLSHGASV
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mRNA from alignment at M-pyrifera_M_contig112023:129..338+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112023.2515.1 ID=mRNA_M-pyrifera_M_contig112023.2515.1|Name=mRNA_M-pyrifera_M_contig112023.2515.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=210bp|location=Sequence derived from alignment at M-pyrifera_M_contig112023:129..338+ (Macrocystis pyrifera P11B4 male)
CTGGAGGTGAACTGCTGCAATACCTCGAGGCAGACTCCCCTCCACACGGC CGCAATTGAGGGCCAGCTAGCGATCCTTCTCCACCTCCTCGAGAAGAAGA AGGCCGACGTCAACGCCAAGGACAGAGACGACTGGACTCCGCTCCACTGC GCCTGCCACAGCGGCCATCTAGACGCCGTCGATCAGCTGCTTTCACACGG CGCCTCTGTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112023:129..338+

>mRNA_M-pyrifera_M_contig112023.2515.1 ID=mRNA_M-pyrifera_M_contig112023.2515.1|Name=mRNA_M-pyrifera_M_contig112023.2515.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig112023:129..338+ (Macrocystis pyrifera P11B4 male)
CTGGAGGTGAACTGCTGCAATACCTCGAGGCAGACTCCCCTCCACACGGC
CGCAATTGAGGGCCAGCTAGCGATCCTTCTCCACCTCCTCGAGAAGAAGA
AGGCCGACGTCAACGCCAAGGACAGAGACGACTGGACTCCGCTCCACTGC
GCCTGCCACAGCGGCCATCTAGACGCCGTCGATCAGCTGCTTTCACACGG
CGCCTCTGTTCTGGAGGTGAACTGCTGCAATACCTCGAGGCAGACTCCCC
TCCACACGGCCGCAATTGAGGGCCAGCTAGCGATCCTTCTCCACCTCCTC
GAGAAGAAGAAGGCCGACGTCAACGCCAAGGACAGAGACGACTGGACTCC
GCTCCACTGCGCCTGCCACAGCGGCCATCTAGACGCCGTCGATCAGCTGC
TTTCACACGGCGCCTCTGTT
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