mRNA_M-pyrifera_M_contig11202.2513.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11202.2513.1
Unique NamemRNA_M-pyrifera_M_contig11202.2513.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig11202.2513.1 vs. uniprot
Match: D8LC27_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC27_ECTSI)

HSP 1 Score: 130 bits (326), Expect = 1.830e-33
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 1 
Query:    1 HGEAEETREDRETGAKLEYRDQWGRAITRKEAFRNLCYQFHGYGSGKKKQEKRLKLVAEEKKKERAMDLQRL 216
            HGEAEETREDRE+GAKLEYRD+WGR ITRKEAFRNLCY+FHGYGSGKKKQEKRLKLV EEKKKERAMDLQRL
Sbjct:  826 HGEAEETREDRESGAKLEYRDEWGREITRKEAFRNLCYKFHGYGSGKKKQEKRLKLVEEEKKKERAMDLQRL 897
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BLAST of mRNA_M-pyrifera_M_contig11202.2513.1 vs. uniprot
Match: A0A836C9M6_9STRA (SART-1 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9M6_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.370e-13
Identity = 37/54 (68.52%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   46 KLEYRDQWGRAITRKEAFRNLCYQFHGYGSGKKKQEKRLKLVAEEKKKERAMDL 207
            KLEYRD++GR +TR EAFR L YQFHGYG GKKKQEKRLK + E++ +ERA D+
Sbjct:  723 KLEYRDEFGRQLTRAEAFRQLNYQFHGYGPGKKKQEKRLKALQEQRMRERAADV 776
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BLAST of mRNA_M-pyrifera_M_contig11202.2513.1 vs. uniprot
Match: A0A7S2XZB3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZB3_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 7.360e-13
Identity = 31/45 (68.89%), Postives = 41/45 (91.11%), Query Frame = 1 
Query:   46 KLEYRDQWGRAITRKEAFRNLCYQFHGYGSGKKKQEKRLKLVAEE 180
            K+EYRD++GR +TRKEAFR L Y+FHG+G GKKK++KRLK++AEE
Sbjct:   59 KIEYRDEFGRELTRKEAFRQLSYRFHGHGPGKKKEDKRLKILAEE 103
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BLAST of mRNA_M-pyrifera_M_contig11202.2513.1 vs. uniprot
Match: A0A448YUV5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUV5_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.260e-12
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:   19 TREDRETGA---KLEYRDQWGRAITRKEAFRNLCYQFHGYGSGKKKQEKRLKLVAEE 180
            T +DRE      KLEYRD+ GR +T+KEA+R+LCYQFHG+G GKKK+EKRLK +A E
Sbjct:  689 TEKDRELARREIKLEYRDKHGRLLTQKEAYRDLCYQFHGHGGGKKKEEKRLKQIARE 745
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BLAST of mRNA_M-pyrifera_M_contig11202.2513.1 vs. uniprot
Match: A0A1Z5JHM4_FISSO (U4/U6.U5 tri-snRNP-associated protein 1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHM4_FISSO)

HSP 1 Score: 69.7 bits (169), Expect = 3.070e-12
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   46 KLEYRDQWGRAITRKEAFRNLCYQFHGYGSGKKKQEKRLKLVAEEKKKERA 198
            KLEYRD  GR +TRKEAFR LCYQFHG+GSGK+K+EK+L+ +A E+ + RA
Sbjct:  593 KLEYRDSHGRLLTRKEAFRELCYQFHGHGSGKRKEEKKLQQIAREQAEARA 643
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BLAST of mRNA_M-pyrifera_M_contig11202.2513.1 vs. uniprot
Match: A0A1Z5JMP6_FISSO (U4/U6.U5 tri-snRNP-associated protein 1 n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMP6_FISSO)

HSP 1 Score: 69.3 bits (168), Expect = 4.200e-12
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:   46 KLEYRDQWGRAITRKEAFRNLCYQFHGYGSGKKKQEKRLKLVAEE 180
            KLEYRD  GR +TRKEAFR LCYQFHG+GSGK+K+EK+L+ +A E
Sbjct:  620 KLEYRDSHGRLLTRKEAFRELCYQFHGHGSGKRKEEKKLQQIARE 664
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BLAST of mRNA_M-pyrifera_M_contig11202.2513.1 vs. uniprot
Match: A0A7S3P6Y0_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P6Y0_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 6.210e-12
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 1 
Query:   46 KLEYRDQWGRAITRKEAFRNLCYQFHGYGSGKKKQEKRLKLVAEEKKKERAMDLQ 210
            KLEYRD+ GR +TRKEAFR+L YQFHGYGSGK+K++K++K +A E+ ++R    Q
Sbjct:  258 KLEYRDEHGRLLTRKEAFRDLSYQFHGYGSGKRKEQKKMKQIAREQAEQRVASRQ 312
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BLAST of mRNA_M-pyrifera_M_contig11202.2513.1 vs. uniprot
Match: B8C3T9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3T9_THAPS)

HSP 1 Score: 68.6 bits (166), Expect = 7.890e-12
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   46 KLEYRDQWGRAITRKEAFRNLCYQFHGYGSGKKKQEKRLKLVAEE 180
            KLEYRD +GR +TRKEA+RN+CYQFHG+GS KK QE+RLK +  E
Sbjct:  755 KLEYRDDFGRLLTRKEAYRNMCYQFHGHGSSKKNQERRLKQIERE 799
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BLAST of mRNA_M-pyrifera_M_contig11202.2513.1 vs. uniprot
Match: A0A7S2EBP1_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EBP1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 7.900e-12
Identity = 31/45 (68.89%), Postives = 38/45 (84.44%), Query Frame = 1 
Query:   46 KLEYRDQWGRAITRKEAFRNLCYQFHGYGSGKKKQEKRLKLVAEE 180
            KLEYRD +GR +TRKEA+R LCYQFHGYGS KK +E+RL+ +A E
Sbjct:  817 KLEYRDDFGRLLTRKEAYRQLCYQFHGYGSSKKNEERRLRQIARE 861
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BLAST of mRNA_M-pyrifera_M_contig11202.2513.1 vs. uniprot
Match: A0A1V9YTX2_9STRA (U4/U6.U5 tri-snRNP-associated protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YTX2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.170e-11
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   40 GAKLEYRDQWGRAITRKEAFRNLCYQFHGYGSGKKKQEKRLKLVAEE 180
            G KL+YRD++GR +T+KEAFR L Y+FHG+  GKKKQEKRLK + EE
Sbjct:   63 GVKLDYRDEFGRLLTKKEAFRQLSYRFHGHQPGKKKQEKRLKQLKEE 109
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11202.2513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC27_ECTSI1.830e-3393.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C9M6_9STRA1.370e-1368.52SART-1 family-domain-containing protein n=1 Tax=Tr... [more]
A0A7S2XZB3_9STRA7.360e-1368.89Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A448YUV5_9STRA2.260e-1263.16Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A1Z5JHM4_FISSO3.070e-1266.67U4/U6.U5 tri-snRNP-associated protein 1 n=1 Tax=Fi... [more]
A0A1Z5JMP6_FISSO4.200e-1271.11U4/U6.U5 tri-snRNP-associated protein 1 n=1 Tax=Fi... [more]
A0A7S3P6Y0_9STRA6.210e-1260.00Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B8C3T9_THAPS7.890e-1268.89Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S2EBP1_9STRA7.900e-1268.89Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A1V9YTX2_9STRA1.170e-1165.96U4/U6.U5 tri-snRNP-associated protein (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11202contigM-pyrifera_M_contig11202:5383..7461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.7
Seed ortholog evalue1.3e-28
Seed eggNOG ortholog2880.D8LC27
Preferred nameSART1
KEGG koko:K01301,ko:K11984,ko:K12811,ko:K12836,ko:K12858
KEGG Pathwayko03040,ko05131,map03040,map05131
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000387,GO:0000398,GO:0000481,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005794,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0012505,GO:0015030,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016604,GO:0016607,GO:0019222,GO:0022407,GO:0022409,GO:0022607,GO:0022613,GO:0022618,GO:0030155,GO:0030532,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034622,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0045580,GO:0045582,GO:0045583,GO:0045585,GO:0045595,GO:0045597,GO:0045619,GO:0045621,GO:0045785,GO:0046483,GO:0046540,GO:0048518,GO:0048522,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0051094,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071005,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1902105,GO:1902107,GO:1902494,GO:1903037,GO:1903039,GO:1903706,GO:1903708,GO:1990904,GO:2000026
EggNOG free text desc.maturation of 5S rRNA
EggNOG OGsKOG2217@1,KOG2217@2759
EC3.4.17.21,3.6.4.13
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03041,ko04121
Exons2
Model size219
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.6744676-CDS-M-pyrifera_M_contig11202:5382..54991622815633.6744676-CDS-M-pyrifera_M_contig11202:5382..5499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11202 5383..5499 +
1692277497.308749-CDS-M-pyrifera_M_contig11202:5382..54991692277497.308749-CDS-M-pyrifera_M_contig11202:5382..5499Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11202 5383..5499 +
1622815633.6896076-CDS-M-pyrifera_M_contig11202:7360..74591622815633.6896076-CDS-M-pyrifera_M_contig11202:7360..7459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11202 7361..7459 +
1692277497.3226407-CDS-M-pyrifera_M_contig11202:7360..74591692277497.3226407-CDS-M-pyrifera_M_contig11202:7360..7459Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11202 7361..7459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11202.2513.1prot_M-pyrifera_M_contig11202.2513.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11202 5383..7459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11202.2513.1

>prot_M-pyrifera_M_contig11202.2513.1 ID=prot_M-pyrifera_M_contig11202.2513.1|Name=mRNA_M-pyrifera_M_contig11202.2513.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
HGEAEETREDRETGAKLEYRDQWGRAITRKEAFRNLCYQFHGYGSGKKKQ
EKRLKLVAEEKKKERAMDLQRL
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mRNA from alignment at M-pyrifera_M_contig11202:5383..7461+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11202.2513.1 ID=mRNA_M-pyrifera_M_contig11202.2513.1|Name=mRNA_M-pyrifera_M_contig11202.2513.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=2079bp|location=Sequence derived from alignment at M-pyrifera_M_contig11202:5383..7461+ (Macrocystis pyrifera P11B4 male)
CACGGGGAGGCGGAGGAAACGCGGGAAGACCGGGAGACGGGCGCGAAGCT
GGAGTACCGTGACCAGTGGGGAAGGGCGATCACCAGGAAGGAGGCCTTCC
GAAACCTGTGCTACCAGGTTAGGTGGACTACAGACTACAGTAGCCCGCCA
TCGTGGTCGTGGTCGTAGGACGTTTTTTTTTTGGGGGGGGGGGACGCGTT
TTTTGGCGAGCGAGCTGTTGCGCGATGGAAACGTTTTCGGTTTTGAACTG
TGGAAAAGCGTTTTTGTTTTGTTTTCTTGTTCGTGCTAGTTTGTAGGCTT
TTGATCCTCGTTTCAATCCTCGTTTTGTTTCACATTTTTTTTTTTTTTTT
CAGGGTGACGTTATTAATGTGTTATTATTATTTTTTGTCTTTGCTCGTCA
TGTTATTTTTCTTGGTTGATTTCCGTGTACATTGTTGTGTATTTTTTATT
TGTTTTGTTTCGGGCGTTGGCACGATTCGACGCGAGTCTACGAGGGACGA
AAGTGCTGAACCCTTCTCAATTTTAAGAAAGCGAGGCTCGTACCTATTTG
GCGGGGAGGGGGGAACAGCCTACTATTACGGGGGACTATGGTTAATAATA
CCAAATATTGTTTTTACGGGGGACCATTTTATATGGCACCTACGGTATAC
ACCAAAACCTATATATTTAGTTATTTTACGAACAATTTTTGGTCCTATTT
ACTATGGTCCCCCCTAATACTAAAAATTTAGAAGTATATAGGGTTTTGTG
TGTACTGTAGGTCCTAATTTCTATGGTTCCCCGTAATATGTGACGGATCT
GAGTCGCGACTATGAATAGGAGGGAGAGGAGGGAAAAAAAGAGAGAAGAG
GGAAGATACTACTAATGAATAGGATTGAAAACGAAACACAAGGACAATTA
ACAGCGGTGTATACAAGCATCGCAAAGAGCGAGGGCAATGTTTCGCTCTT
TGTGTAGTGTTGTGCAAAAGCCGTTTTTGCGCACAAAAGAGCTCACCCGG
CAACCGTCCATGCGCATGATATTCTAGCCGTGCGATACAGACCCGACCCT
ACGCAGATCATACACATATACATACCAACATGTAGTACGTGTATCCGCTC
CGAACGATCTGTGTTACTATGTGGATCAGCGAAGGGGGATCTGCTCTGCG
AGATGTTTAAAGTAGGGACCTGATCTTTCCGATGTGTACAGTATTATTTT
TGTGATCAAAATACCTTTGCACCCGTACGTACCGTTCTGCTTTGTGTTAT
GAGTGAAAACGAATAACTCTTTTTTTGCTCACCAAAAAAAAAATCGTACA
GTATACGCGCTCTTGATGTGCGTTTGTTTGTCGAAGGCCGCGTTGCCTGC
TGTACGTTTTCTGGTCGGAACCTATTTTTTGGCAAGCAGAAAGGAGGCTC
GCAGAAGGAGAGGACGTCATGGTTCAGTCGAGGTGGAAGCACACATCCTC
CACATCTTTTTCAGTGCTGGGACGGACGGGAACGTTTCCGTGTTTTGACT
TTTTCTTGGTGGTTTCGTCGTACGCCTGTAGAACGTCGGCCGAGCTTGCT
TCGACAGGAATGATCATTATTTTTTTTGCATGAAAAACCTTCAGATGGTT
GACTTCAGGTCGACGGCTAACGTTATGATTGGTTCAATATACTTGAATTC
AAGGTCTACCCCCTGTAAACACCCTTTTTGCGAACGCCTGCTGGGATGCT
TGTAGGAGTGGAGATTCAAAGAGGAGTCAAGTCCGGGATGACATCCATTT
TTTCGAAATTGGGCCATGGTACTCCTGCGCGCGTGGCCGCCTTGACTGGT
TCTCCCTTGTGAGGCTTTTGACGCGTCCCACATTCCTGCTGTAGTTTCGT
GTTGTGCGCGTGTGTGCGCGTGCATGGGCGTGTGTATGCCCGTGCCAGTG
CGCCTGTGTCTGCGCGGTGGTGCTCACCGTACACGCTTTTTGTGTTTGTT
TTTTTTGTTGTGGTTGTTCTCGCGGCAGTTCCACGGGTACGGCTCGGGTA
AGAAGAAGCAGGAGAAGCGCTTGAAGCTTGTCGCGGAGGAGAAGAAGAAG
GAGCGCGCCATGGACCTACAGAGGCTAAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11202:5383..7461+

>mRNA_M-pyrifera_M_contig11202.2513.1 ID=mRNA_M-pyrifera_M_contig11202.2513.1|Name=mRNA_M-pyrifera_M_contig11202.2513.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig11202:5383..7461+ (Macrocystis pyrifera P11B4 male)
CACGGGGAGGCGGAGGAAACGCGGGAAGACCGGGAGACGGGCGCGAAGCT
GGAGTACCGTGACCAGTGGGGAAGGGCGATCACCAGGAAGGAGGCCTTCC
GAAACCTGTGCTACCAGCACGGGGAGGCGGAGGAAACGCGGGAAGACCGG
GAGACGGGCGCGAAGCTGGAGTACCGTGACCAGTGGGGAAGGGCGATCAC
CAGGAAGGAGGCCTTCCGAAACCTGTGCTACCAGTTCCACGGGTACGGCT
CGGGTAAGAAGAAGCAGGAGAAGCGCTTGAAGCTTGTCGCGGAGGAGAAG
AAGAAGGAGCGCGCCATGGACCTACAGAGGCTATTCCACGGGTACGGCTC
GGGTAAGAAGAAGCAGGAGAAGCGCTTGAAGCTTGTCGCGGAGGAGAAGA
AGAAGGAGCGCGCCATGGACCTACAGAGGCTA
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