mRNA_M-pyrifera_M_contig112011.2512.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112011.2512.1
Unique NamemRNA_M-pyrifera_M_contig112011.2512.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig112011.2512.1 vs. uniprot
Match: A0A6G1EL30_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1EL30_9ORYZ)

HSP 1 Score: 51.6 bits (122), Expect = 3.930e-6
Identity = 24/56 (42.86%), Postives = 36/56 (64.29%), Query Frame = 1 
Query:    4 EMEGEGVPPNNCTYNAAIKAC-GDAGALPEALELLDEMADKGVELSVVTYGTAIAA 168
            E  G G+PP+ CTYN  ++A   + G++  A  L DEM  +G+  +VVT+GT +AA
Sbjct:  143 ECRGSGIPPDACTYNILMRAAVAEPGSVENACLLFDEMRQRGIAPTVVTFGTLVAA 198
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BLAST of mRNA_M-pyrifera_M_contig112011.2512.1 vs. uniprot
Match: A0A0E0HAZ5_ORYNI (Uncharacterized protein n=10 Tax=Oryza TaxID=4527 RepID=A0A0E0HAZ5_ORYNI)

HSP 1 Score: 48.9 bits (115), Expect = 3.530e-5
Identity = 23/56 (41.07%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:    4 EMEGEGVPPNNCTYNAAIKAC-GDAGALPEALELLDEMADKGVELSVVTYGTAIAA 168
            E  G G+ P+ CTYN  ++A   D+G++  A  L DEM  +G+  +VVT+GT + A
Sbjct:  145 ECRGSGIHPDACTYNILMRAAVADSGSVDNACLLFDEMLQRGIAPTVVTFGTLVTA 200
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BLAST of mRNA_M-pyrifera_M_contig112011.2512.1 vs. uniprot
Match: A0A0D9WDT1_9ORYZ (Uncharacterized protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9WDT1_9ORYZ)

HSP 1 Score: 47.8 bits (112), Expect = 9.050e-5
Identity = 21/57 (36.84%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:    4 EMEGEGVPPNNCTYNAAIKACG--DAGALPEALELLDEMADKGVELSVVTYGTAIAA 168
            E    G+ P+ CTYN  ++A    D+G++ +A  L DEM  +G+  ++VT+GT + A
Sbjct:  139 ECRASGIAPDACTYNILMRAAAVDDSGSVEDARNLFDEMLQRGIAPTIVTFGTLVTA 195
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112011.2512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6G1EL30_9ORYZ3.930e-642.86Uncharacterized protein n=1 Tax=Oryza meyeriana va... [more]
A0A0E0HAZ5_ORYNI3.530e-541.07Uncharacterized protein n=10 Tax=Oryza TaxID=4527 ... [more]
A0A0D9WDT1_9ORYZ9.050e-536.84Uncharacterized protein n=1 Tax=Leersia perrieri T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112011contigM-pyrifera_M_contig112011:356..526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.623167-CDS-M-pyrifera_M_contig112011:355..5201622815633.623167-CDS-M-pyrifera_M_contig112011:355..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112011 356..520 -
1692277497.2861936-CDS-M-pyrifera_M_contig112011:355..5201692277497.2861936-CDS-M-pyrifera_M_contig112011:355..520Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112011 356..520 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.6337812-UTR-M-pyrifera_M_contig112011:520..5261622815633.6337812-UTR-M-pyrifera_M_contig112011:520..526Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112011 521..526 -
1692277497.296214-UTR-M-pyrifera_M_contig112011:520..5261692277497.296214-UTR-M-pyrifera_M_contig112011:520..526Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig112011 521..526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112011.2512.1prot_M-pyrifera_M_contig112011.2512.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112011 356..520 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112011.2512.1

>prot_M-pyrifera_M_contig112011.2512.1 ID=prot_M-pyrifera_M_contig112011.2512.1|Name=mRNA_M-pyrifera_M_contig112011.2512.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
MEGEGVPPNNCTYNAAIKACGDAGALPEALELLDEMADKGVELSVVTYGT
AIAAC
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mRNA from alignment at M-pyrifera_M_contig112011:356..526-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112011.2512.1 ID=mRNA_M-pyrifera_M_contig112011.2512.1|Name=mRNA_M-pyrifera_M_contig112011.2512.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=171bp|location=Sequence derived from alignment at M-pyrifera_M_contig112011:356..526- (Macrocystis pyrifera P11B4 male)
CAGGAGATGGAGGGAGAGGGAGTCCCGCCCAACAACTGCACGTACAACGC
CGCCATCAAAGCCTGCGGCGACGCTGGAGCGCTTCCCGAGGCGCTGGAGC
TGCTGGACGAGATGGCGGACAAGGGTGTGGAGCTGTCCGTCGTGACCTAC
GGCACCGCTATCGCCGCCTGT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112011:356..526-

>mRNA_M-pyrifera_M_contig112011.2512.1 ID=mRNA_M-pyrifera_M_contig112011.2512.1|Name=mRNA_M-pyrifera_M_contig112011.2512.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig112011:356..526- (Macrocystis pyrifera P11B4 male)
ATGGAGGGAGAGGGAGTCCCGCCCAACAACTGCACGTACAACGCCGCCAT
CAAAGCCTGCGGCGACGCTGGAGCGCTTCCCGAGGCGCTGGAGCTGCTGG
ACGAGATGGCGGACAAGGGTGTGGAGCTGTCCGTCGTGACCTACGGCACC
GCTATCGCCGCCTGTATGGAGGGAGAGGGAGTCCCGCCCAACAACTGCAC
GTACAACGCCGCCATCAAAGCCTGCGGCGACGCTGGAGCGCTTCCCGAGG
CGCTGGAGCTGCTGGACGAGATGGCGGACAAGGGTGTGGAGCTGTCCGTC
GTGACCTACGGCACCGCTATCGCCGCCTGT
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