mRNA_M-pyrifera_M_contig111974.2510.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111974.2510.1
Unique NamemRNA_M-pyrifera_M_contig111974.2510.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111974.2510.1 vs. uniprot
Match: A0A5A8E7Y2_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8E7Y2_CAFRO)

HSP 1 Score: 123 bits (309), Expect = 2.550e-31
Identity = 65/110 (59.09%), Postives = 81/110 (73.64%), Query Frame = 1 
Query:    1 LRRAMVDKQGRAWGVGRRKSAHANVSVQLGDGDFRVNRKPLAEYFSDMDLRREAIAPLVVLRACGAFDVQVTVKGGGVSGQAAAIKLGVARALANFDPYLRPKLKSLKLL 330
            +R AM D +GRA+ VG RK+A A V VQLGDG F +N +PLA+YF  +  R+EAIAPL+ + A GAFD+ +   GGG SGQA AIK G+ARALA FDPYLR  L+ L+LL
Sbjct:  287 VRHAMTDAKGRAFAVGGRKNAKARVCVQLGDGRFNINGRPLADYFPHLVDRKEAIAPLMAVYATGAFDIDIRATGGGHSGQAGAIKHGLARALARFDPYLRLPLRRLRLL 396
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BLAST of mRNA_M-pyrifera_M_contig111974.2510.1 vs. uniprot
Match: A0A7S1CEU3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CEU3_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.850e-28
Identity = 59/103 (57.28%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:   19 DKQGRAWGVGRRKSAHANVSVQLGDGDFRVNRKPLAEYFSDMDLRREAIAPLVVLRACGAFDVQVTVKGGGVSGQAAAIKLGVARALANFDPYLRPKLKSLKL 327
            D +GRA+  GRRK+A A V V  GDG+F +N + + EYF     RRE +AP +  R+CGAFDV +TV GGG SGQA AIK GVA AL  +DP+LRP LK LKL
Sbjct:  198 DAKGRAYATGRRKTATARVWVSEGDGNFTINNQSIVEYFERPAHRRECLAPFLATRSCGAFDVWLTVSGGGKSGQAGAIKHGVANALCAYDPFLRPVLKKLKL 300
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BLAST of mRNA_M-pyrifera_M_contig111974.2510.1 vs. uniprot
Match: A0A813CGE0_9DINO (MRPS9 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813CGE0_9DINO)

HSP 1 Score: 110 bits (274), Expect = 4.640e-27
Identity = 59/104 (56.73%), Postives = 72/104 (69.23%), Query Frame = 1 
Query:   19 DKQGRAWGVGRRKSAHANVSVQLGDGDFRVNRKPLAEYFSDMDLRREAIAPLVVLRACGAFDVQVTVKGGGVSGQAAAIKLGVARALANFDPYLRPKLKSLKLL 330
            D QGRA   G RK++ A   V+ GDG F VNR PLA YFS ++ R+ A+ PL+ L ACG FDV V V+GGGV GQA A++  VARALA +DPYL+P LK   LL
Sbjct:  170 DAQGRAGAYGGRKTSSAYAWVKAGDGGFSVNRTPLAYYFSGLEERKIAMFPLIALEACGGFDVTVFVRGGGVMGQARAVRNAVARALAAYDPYLKPVLKKHDLL 273
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BLAST of mRNA_M-pyrifera_M_contig111974.2510.1 vs. uniprot
Match: A0A4S8J5U3_MUSBA (Uncharacterized protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4S8J5U3_MUSBA)

HSP 1 Score: 107 bits (266), Expect = 8.090e-25
Identity = 55/102 (53.92%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:   13 MVDKQGRAWGVGRRKSAHANVSVQLGDGDFRVNRKPLAEYFSDMDLRREAIAPLVVLRACGAFDVQVTVKGGGVSGQAAAIKLGVARALANFDPYLRPKLKS 318
            +VD++GRA+G GRRK + A V +Q GDG F VN+K    YFS +D R E + P VV +  G +DV  TV+GGGVSGQ  AI+LG++RAL N++P LRP LK+
Sbjct:  340 VVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNKKQFDAYFSILDHRVELLQPFVVTKTLGLWDVNCTVQGGGVSGQVGAIRLGISRALQNWEPGLRPFLKA 441
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BLAST of mRNA_M-pyrifera_M_contig111974.2510.1 vs. uniprot
Match: A0A2H6ATC4_9BACT (30S ribosomal protein S9 n=1 Tax=bacterium HR39 TaxID=2035434 RepID=A0A2H6ATC4_9BACT)

HSP 1 Score: 100 bits (250), Expect = 8.290e-25
Identity = 53/100 (53.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:   16 VDKQGRAWGVGRRKSAHANVSVQLGDGDFRVNRKPLAEYFSDMDLRREAIAPLVVLRACGAFDVQVTVKGGGVSGQAAAIKLGVARALANFDPYLRPKLK 315
            +D+ GRA+  G RK A A V ++LG+G F VN KP+AEYF    L+     P  V+   G FDV  TV GGG+SGQA A++ G+ARAL NFDP LRP LK
Sbjct:   33 LDELGRAYATGGRKEATARVWIRLGNGQFTVNGKPMAEYFRRPTLQMIVNQPFAVIGRLGDFDVYCTVSGGGLSGQAGAVRHGIARALVNFDPTLRPILK 132
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BLAST of mRNA_M-pyrifera_M_contig111974.2510.1 vs. uniprot
Match: A0A427A3W6_ENSVE (Uncharacterized protein n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A427A3W6_ENSVE)

HSP 1 Score: 102 bits (253), Expect = 1.660e-24
Identity = 51/102 (50.00%), Postives = 69/102 (67.65%), Query Frame = 1 
Query:   13 MVDKQGRAWGVGRRKSAHANVSVQLGDGDFRVNRKPLAEYFSDMDLRREAIAPLVVLRACGAFDVQVTVKGGGVSGQAAAIKLGVARALANFDPYLRPKLKS 318
            +VD++GRA+G GRRK + A V +Q GDG F VN K    YF  +D R E + P  V +  G +DV  TV+GGG+SGQ  AI+LG++RAL N++P  RP LK+
Sbjct:   75 LVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNEKQFDAYFPILDHRAELLRPFTVTKTLGLWDVNCTVQGGGISGQVGAIRLGISRALQNWEPGFRPFLKA 176
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BLAST of mRNA_M-pyrifera_M_contig111974.2510.1 vs. uniprot
Match: A0A453AUI8_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453AUI8_AEGTS)

HSP 1 Score: 101 bits (251), Expect = 1.680e-24
Identity = 51/101 (50.50%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:   16 VDKQGRAWGVGRRKSAHANVSVQLGDGDFRVNRKPLAEYFSDMDLRREAIAPLVVLRACGAFDVQVTVKGGGVSGQAAAIKLGVARALANFDPYLRPKLKS 318
            VD++GRA+G G+RK + A V +Q GDG F VN K    YF  +D R + + P  V +  G +DV  TVKGGGVSGQ  A++LG++RAL N++P LRP LK+
Sbjct:   75 VDEKGRAYGTGKRKCSIARVWIQPGDGKFVVNDKQFDAYFPILDHRADLLRPFTVTKTLGLWDVACTVKGGGVSGQVGAVRLGISRALQNWEPGLRPYLKA 175
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BLAST of mRNA_M-pyrifera_M_contig111974.2510.1 vs. uniprot
Match: UPI001F5C1044 (30S ribosomal protein S9, mitochondrial-like n=2 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5C1044)

HSP 1 Score: 104 bits (260), Expect = 2.510e-24
Identity = 53/101 (52.48%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:   16 VDKQGRAWGVGRRKSAHANVSVQLGDGDFRVNRKPLAEYFSDMDLRREAIAPLVVLRACGAFDVQVTVKGGGVSGQAAAIKLGVARALANFDPYLRPKLKS 318
            VD+QGRA+G G+RK + A V +Q GDG F VN K    YF  +D R + + P  V +  G +DV  TVKGGGVSGQ  A++LG++RAL N++P LRP LKS
Sbjct:  282 VDEQGRAYGTGKRKCSIARVWIQPGDGKFVVNEKQFDAYFPILDHRADLLRPFTVTKTLGLWDVACTVKGGGVSGQVGAVRLGISRALQNWEPGLRPYLKS 382
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BLAST of mRNA_M-pyrifera_M_contig111974.2510.1 vs. uniprot
Match: A0A804LAV8_MUSAM ((wild Malaysian banana) hypothetical protein n=1 Tax=Musa acuminata subsp. malaccensis TaxID=214687 RepID=A0A804LAV8_MUSAM)

HSP 1 Score: 104 bits (260), Expect = 2.880e-24
Identity = 53/102 (51.96%), Postives = 72/102 (70.59%), Query Frame = 1 
Query:   13 MVDKQGRAWGVGRRKSAHANVSVQLGDGDFRVNRKPLAEYFSDMDLRREAIAPLVVLRACGAFDVQVTVKGGGVSGQAAAIKLGVARALANFDPYLRPKLKS 318
            +VD++GRA+G GRRK + A V +Q GDG F VN K    YFS +D R + + P +V +  G +DV  TV+GGGVSGQ  AI+LG++RAL N++P LRP LK+
Sbjct:  296 VVDEKGRAYGTGRRKCSIARVWIQPGDGKFIVNEKQFDAYFSILDHRVQLLQPFIVTKTLGLWDVNCTVQGGGVSGQVGAIRLGISRALQNWEPGLRPFLKA 397
[Close]
BLAST of mRNA_M-pyrifera_M_contig111974.2510.1 vs. uniprot
Match: A0A6I9S4N7_ELAGV (30S ribosomal protein S9, mitochondrial n=1 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6I9S4N7_ELAGV)

HSP 1 Score: 104 bits (259), Expect = 4.100e-24
Identity = 54/101 (53.47%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:   16 VDKQGRAWGVGRRKSAHANVSVQLGDGDFRVNRKPLAEYFSDMDLRREAIAPLVVLRACGAFDVQVTVKGGGVSGQAAAIKLGVARALANFDPYLRPKLKS 318
            VD++GRA+G GRRK + A V +Q GDG F VN K    YF  +D R E + P  V +  G +DV  TVKGGGVSGQ  AI+LG++RAL N++P LRP LK+
Sbjct:  300 VDEKGRAYGTGRRKCSVARVWIQPGDGKFIVNDKQFDAYFPILDHRAELLRPFTVTKTLGLWDVNCTVKGGGVSGQVGAIRLGISRALQNWEPGLRPYLKA 400
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111974.2510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5A8E7Y2_CAFRO2.550e-3159.09Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
A0A7S1CEU3_9STRA1.850e-2857.28Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A813CGE0_9DINO4.640e-2756.73MRPS9 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A4S8J5U3_MUSBA8.090e-2553.92Uncharacterized protein n=1 Tax=Musa balbisiana Ta... [more]
A0A2H6ATC4_9BACT8.290e-2553.0030S ribosomal protein S9 n=1 Tax=bacterium HR39 Ta... [more]
A0A427A3W6_ENSVE1.660e-2450.00Uncharacterized protein n=1 Tax=Ensete ventricosum... [more]
A0A453AUI8_AEGTS1.680e-2450.50Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
UPI001F5C10442.510e-2452.4830S ribosomal protein S9, mitochondrial-like n=2 T... [more]
A0A804LAV8_MUSAM2.880e-2451.96(wild Malaysian banana) hypothetical protein n=1 T... [more]
A0A6I9S4N7_ELAGV4.100e-2453.4730S ribosomal protein S9, mitochondrial n=1 Tax=El... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111974contigM-pyrifera_M_contig111974:256..585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score105.5
Seed ortholog evalue1.5e-20
Seed eggNOG ortholog4641.GSMUA_Achr11P24390_001
KEGG koko:K02996
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000462,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006412,GO:0006518,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009553,GO:0009555,GO:0009559,GO:0009561,GO:0009987,GO:0010467,GO:0015935,GO:0016070,GO:0016072,GO:0019538,GO:0022613,GO:0030154,GO:0030490,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034645,GO:0034660,GO:0042254,GO:0042274,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0048229,GO:0048856,GO:0048869,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
EggNOG free text desc.Belongs to the universal ribosomal protein uS9 family
EggNOG OGs37HX7@33090,3GC8I@35493,3KNDV@4447,COG0103@1,KOG1697@2759
COG Functional cat.J
Best tax levelLiliopsida
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Exons1
Model size330
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.542398-UTR-M-pyrifera_M_contig111974:255..2671622815633.542398-UTR-M-pyrifera_M_contig111974:255..267Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111974 256..267 +
1692277497.246252-UTR-M-pyrifera_M_contig111974:255..2671692277497.246252-UTR-M-pyrifera_M_contig111974:255..267Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111974 256..267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.552777-CDS-M-pyrifera_M_contig111974:267..5851622815633.552777-CDS-M-pyrifera_M_contig111974:267..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111974 268..585 +
1692277497.2639556-CDS-M-pyrifera_M_contig111974:267..5851692277497.2639556-CDS-M-pyrifera_M_contig111974:267..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111974 268..585 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111974.2510.1prot_M-pyrifera_M_contig111974.2510.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111974 268..585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111974.2510.1

>prot_M-pyrifera_M_contig111974.2510.1 ID=prot_M-pyrifera_M_contig111974.2510.1|Name=mRNA_M-pyrifera_M_contig111974.2510.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=106bp
MVDKQGRAWGVGRRKSAHANVSVQLGDGDFRVNRKPLAEYFSDMDLRREA
IAPLVVLRACGAFDVQVTVKGGGVSGQAAAIKLGVARALANFDPYLRPKL
KSLKLL
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mRNA from alignment at M-pyrifera_M_contig111974:256..585+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111974.2510.1 ID=mRNA_M-pyrifera_M_contig111974.2510.1|Name=mRNA_M-pyrifera_M_contig111974.2510.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig111974:256..585+ (Macrocystis pyrifera P11B4 male)
TTGCGGAGAGCGATGGTTGACAAACAAGGGCGTGCTTGGGGAGTAGGACG
TCGTAAGTCTGCGCATGCCAATGTGAGTGTGCAGCTGGGAGATGGAGACT
TTCGTGTGAATCGTAAACCACTCGCAGAGTACTTTTCTGATATGGACTTG
CGTAGAGAAGCAATTGCACCTCTTGTAGTCCTTCGAGCATGTGGAGCCTT
TGATGTGCAAGTGACTGTCAAAGGAGGGGGTGTATCAGGACAAGCGGCTG
CTATCAAGCTTGGGGTTGCACGTGCCCTCGCCAACTTTGACCCCTACCTC
AGGCCCAAGTTGAAGTCTCTCAAATTGCTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111974:256..585+

>mRNA_M-pyrifera_M_contig111974.2510.1 ID=mRNA_M-pyrifera_M_contig111974.2510.1|Name=mRNA_M-pyrifera_M_contig111974.2510.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=636bp|location=Sequence derived from alignment at M-pyrifera_M_contig111974:256..585+ (Macrocystis pyrifera P11B4 male)
ATGGTTGACAAACAAGGGCGTGCTTGGGGAGTAGGACGTCGTAAGTCTGC
GCATGCCAATGTGAGTGTGCAGCTGGGAGATGGAGACTTTCGTGTGAATC
GTAAACCACTCGCAGAGTACTTTTCTGATATGGACTTGCGTAGAGAAGCA
ATTGCACCTCTTGTAGTCCTTCGAGCATGTGGAGCCTTTGATGTGCAAGT
GACTGTCAAAGGAGGGGGTGTATCAGGACAAGCGGCTGCTATCAAGCTTG
GGGTTGCACGTGCCCTCGCCAACTTTGACCCCTACCTCAGGCCCAAGTTG
AAGTCTCTCAAATTGCTCATGGTTGACAAACAAGGGCGTGCTTGGGGAGT
AGGACGTCGTAAGTCTGCGCATGCCAATGTGAGTGTGCAGCTGGGAGATG
GAGACTTTCGTGTGAATCGTAAACCACTCGCAGAGTACTTTTCTGATATG
GACTTGCGTAGAGAAGCAATTGCACCTCTTGTAGTCCTTCGAGCATGTGG
AGCCTTTGATGTGCAAGTGACTGTCAAAGGAGGGGGTGTATCAGGACAAG
CGGCTGCTATCAAGCTTGGGGTTGCACGTGCCCTCGCCAACTTTGACCCC
TACCTCAGGCCCAAGTTGAAGTCTCTCAAATTGCTC
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