mRNA_M-pyrifera_M_contig111965.2507.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111965.2507.1
Unique NamemRNA_M-pyrifera_M_contig111965.2507.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111965.2507.1 vs. uniprot
Match: X6M7U8_RETFI (Protein-S-isoprenylcysteine O-methyltransferase n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6M7U8_RETFI)

HSP 1 Score: 81.3 bits (199), Expect = 5.580e-17
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 1
Query:    4 MEEHQLVTSGPYALARHPMYTAFFIFIFSLFFTLSTWVTPTLALLVLLYAASRIGREERLMIHLFGDQYLTYKSRTGAFLPFRFPCCDCGLTNAQALEALQNTHQDSSLIPQTE 345
            +E HQLV +GPY  ARHP YT   +F    F    +W+     +  +  A+SRI +EERL++H FG +Y+ Y  +TGAF       CDCG+      E L   ++++ + P+T+
Sbjct:    9 VENHQLVKNGPYRFARHPTYTVLTLFSVGFFLCTGSWLVFLCLVFNVAVASSRIRQEERLLVHQFGQEYIDYMEKTGAFCCIP-KLCDCGIDIDNEKELLLLKYEEARIKPKTK 121          
BLAST of mRNA_M-pyrifera_M_contig111965.2507.1 vs. uniprot
Match: UPI0016610D4C (protein-S-isoprenylcysteine O-methyltransferase n=1 Tax=Pseudaminobacter soli TaxID=2831468 RepID=UPI0016610D4C)

HSP 1 Score: 75.9 bits (185), Expect = 1.240e-14
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = 1
Query:    1 IMEEHQLVTSGPYALARHPMYTAFFIFIFSLFFTLSTWVTPTLALL---VLLYAASRIGREERLMIHLFGDQYLTYKSRTGAFLPF 249
            I +EH+L++SGPYAL RHPMYT+FF+      F L  W    + L+   VL +   R+ +EER+M+  FG QY TY  RT   +P+
Sbjct:  112 IRDEHRLISSGPYALVRHPMYTSFFLIALGQLFLLPNWFAGPIGLVGFAVLFFV--RVAKEERMMLETFGPQYTTYMGRTKRLIPY 195          
BLAST of mRNA_M-pyrifera_M_contig111965.2507.1 vs. uniprot
Match: UPI001569E481 (protein-S-isoprenylcysteine O-methyltransferase n=1 Tax=Ensifer sesbaniae TaxID=1214071 RepID=UPI001569E481)

HSP 1 Score: 75.5 bits (184), Expect = 1.670e-14
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 1
Query:    1 IMEEHQLVTSGPYALARHPMYTAFFIFIFSLFFTLSTWVTPTLALL--VLLYAASRIGREERLMIHLFGDQYLTYKSRTGAFLPFRF 255
            I E+HQL+++GPYAL RHPMYT+F +      F LS WV     +L   LL+   R+G+EERLM+  FG +Y  Y  RT   +P+ +
Sbjct:  110 IREKHQLISNGPYALVRHPMYTSFLLMGIGQMFLLSNWVVGLAGILGFALLFFL-RVGKEERLMLEFFGPEYRAYMDRTKRIIPYLY 195          
BLAST of mRNA_M-pyrifera_M_contig111965.2507.1 vs. uniprot
Match: A0A0T6ZX86_9HYPH (Farnesyl cysteine carboxyl-methyltransferase n=7 Tax=Sinorhizobium/Ensifer group TaxID=227292 RepID=A0A0T6ZX86_9HYPH)

HSP 1 Score: 72.0 bits (175), Expect = 3.560e-13
Identity = 37/88 (42.05%), Postives = 52/88 (59.09%), Query Frame = 1
Query:    1 IMEEHQLVTSGPYALARHPMYTAFFIFIFSLFFTLSTWVTPTLALL---VLLYAASRIGREERLMIHLFGDQYLTYKSRTGAFLPFRF 255
            I E+HQL++ GPYA+ RHPMYT+F +      F LS WV   L +    VL +   R+ +EERLM+  FG +Y  Y  RT   +P+ +
Sbjct:  110 IREKHQLISKGPYAVVRHPMYTSFLLMAIGQMFLLSNWVAGLLGVAGFAVLFFL--RVDKEERLMLEFFGPEYRAYMDRTKRIIPYLY 195          
BLAST of mRNA_M-pyrifera_M_contig111965.2507.1 vs. uniprot
Match: A0A498GX13_9EURY (Uncharacterized protein n=1 Tax=Methanoculleus taiwanensis TaxID=1550565 RepID=A0A498GX13_9EURY)

HSP 1 Score: 71.6 bits (174), Expect = 5.360e-13
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 1
Query:    1 IMEEHQLVTSGPYALARHPMYTAFFIFIFSLFFTLSTWVTPTLALLV-LLYAASRIGREERLMIHLFGDQYLTYKSRTGAFLP 246
            + E H+LVTSGPY   RHP YTAF + +    F  + W+     + V  L+   RI REE +M+  FGD+Y TY+ RTG  +P
Sbjct:  109 LKENHRLVTSGPYRFVRHPTYTAFTLMMAGQLFLTANWLVGIYGIAVWALFCVVRIPREEAMMLEEFGDEYRTYRDRTGILVP 191          
BLAST of mRNA_M-pyrifera_M_contig111965.2507.1 vs. uniprot
Match: A0A1D2STS3_9HYPH (Methyltransferase n=1 Tax=Mesorhizobium sp. SCN 65-20 TaxID=1660109 RepID=A0A1D2STS3_9HYPH)

HSP 1 Score: 71.2 bits (173), Expect = 7.010e-13
Identity = 38/86 (44.19%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    1 IMEEHQLVTSGPYALARHPMYTAFFIFIFSLFFTLSTWVTPTLALL---VLLYAASRIGREERLMIHLFGDQYLTYKSRTGAFLPF 249
            I EEH LV+ GPYAL RHPMYT+FF+        LS WV   + L+   VL +   R+ +EE +M+ +FG QY  Y  RT   +P+
Sbjct:  110 IREEHNLVSGGPYALVRHPMYTSFFLMAVGQALLLSNWVVGLVGLVGFAVLFFL--RVDKEEHMMLEVFGPQYQAYMERTKRIIPY 193          
BLAST of mRNA_M-pyrifera_M_contig111965.2507.1 vs. uniprot
Match: A0A1L5NE94_9HYPH (Phospholipid methyltransferase protein n=13 Tax=Rhizobium TaxID=379 RepID=A0A1L5NE94_9HYPH)

HSP 1 Score: 70.9 bits (172), Expect = 9.840e-13
Identity = 36/86 (41.86%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 IMEEHQLVTSGPYALARHPMYTAFFIFIFSLFFTLSTWVTPTLALL---VLLYAASRIGREERLMIHLFGDQYLTYKSRTGAFLPF 249
            I ++HQL++SGPYA  RHPMYT+F +      F LS WV     L+   +L +   R+ +EER+M+ +FG QY  Y  RT   +P+
Sbjct:  110 IRDQHQLISSGPYAFVRHPMYTSFLLMGLGQAFLLSNWVVGLAGLIGFAILFFL--RVDKEERMMLEIFGAQYRAYMDRTKRIIPY 193          
BLAST of mRNA_M-pyrifera_M_contig111965.2507.1 vs. uniprot
Match: A0A2P7AYC3_9HYPH (Methyltransferase n=1 Tax=Phyllobacterium sophorae TaxID=1520277 RepID=A0A2P7AYC3_9HYPH)

HSP 1 Score: 70.9 bits (172), Expect = 9.840e-13
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = 1
Query:    1 IMEEHQLVTSGPYALARHPMYTAFFIFIFSLFFTLSTWVTPTLALL---VLLYAASRIGREERLMIHLFGDQYLTYKSRTGAFLPF 249
            I E+H+LV+SGPYA  RHPMYT+F +      F L+ WV     L+   VL +   R+ +EER+M+  FG QY TY  RT   +P+
Sbjct:  110 IREQHRLVSSGPYAFVRHPMYTSFLLMGLGQAFLLANWVAGLAGLIGFAVLFFL--RVSKEERMMLENFGPQYRTYMERTKRIIPY 193          
BLAST of mRNA_M-pyrifera_M_contig111965.2507.1 vs. uniprot
Match: A0A0Q6RJQ0_9HYPH (Methyltransferase n=1 Tax=Rhizobium sp. Root1203 TaxID=1736427 RepID=A0A0Q6RJQ0_9HYPH)

HSP 1 Score: 70.9 bits (172), Expect = 9.840e-13
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 IMEEHQLVTSGPYALARHPMYTAFFIFIFSLFFTLSTWVTPTLALL---VLLYAASRIGREERLMIHLFGDQYLTYKSRTGAFLPFRF 255
            I E+H+LV+ GPYAL RHPMYT+F +      F LS WV     ++   +L +   R+ +EER+M+ LFG QY  Y  RT   +P+ +
Sbjct:  110 IREKHELVSGGPYALIRHPMYTSFLLMGLGQAFLLSNWVVGLAGVIGFAILFFL--RVDKEERMMLELFGPQYRAYMDRTKRIIPYLY 195          
BLAST of mRNA_M-pyrifera_M_contig111965.2507.1 vs. uniprot
Match: A0A1G9TC76_9HYPH (Protein-S-isoprenylcysteine O-methyltransferase Ste14 n=6 Tax=Ensifer TaxID=106591 RepID=A0A1G9TC76_9HYPH)

HSP 1 Score: 70.1 bits (170), Expect = 1.940e-12
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 1
Query:    1 IMEEHQLVTSGPYALARHPMYTAFFIFIFSLFFTLSTWVTPTLALL---VLLYAASRIGREERLMIHLFGDQYLTYKSRTGAFLPF 249
            I E+H+L+++GPYA  RHPMYT+F +        LS WV     LL   VL +   R+G+EERLM+  FG +Y  Y  RT   +P+
Sbjct:  110 IREKHKLISTGPYAAVRHPMYTSFLLMGIGQMLLLSNWVVGLAGLLGFAVLFFL--RVGKEERLMLEFFGPEYRAYMDRTKRIIPY 193          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111965.2507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
X6M7U8_RETFI5.580e-1736.84Protein-S-isoprenylcysteine O-methyltransferase n=... [more]
UPI0016610D4C1.240e-1444.19protein-S-isoprenylcysteine O-methyltransferase n=... [more]
UPI001569E4811.670e-1444.83protein-S-isoprenylcysteine O-methyltransferase n=... [more]
A0A0T6ZX86_9HYPH3.560e-1342.05Farnesyl cysteine carboxyl-methyltransferase n=7 T... [more]
A0A498GX13_9EURY5.360e-1343.37Uncharacterized protein n=1 Tax=Methanoculleus tai... [more]
A0A1D2STS3_9HYPH7.010e-1344.19Methyltransferase n=1 Tax=Mesorhizobium sp. SCN 65... [more]
A0A1L5NE94_9HYPH9.840e-1341.86Phospholipid methyltransferase protein n=13 Tax=Rh... [more]
A0A2P7AYC3_9HYPH9.840e-1344.19Methyltransferase n=1 Tax=Phyllobacterium sophorae... [more]
A0A0Q6RJQ0_9HYPH9.840e-1342.05Methyltransferase n=1 Tax=Rhizobium sp. Root1203 T... [more]
A0A1G9TC76_9HYPH1.940e-1243.02Protein-S-isoprenylcysteine O-methyltransferase St... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111965contigM-pyrifera_M_contig111965:236..586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.5
Seed ortholog evalue5.9e-10
Seed eggNOG ortholog1041146.ATZB01000012_gene3150
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Isoprenylcysteine carboxyl methyltransferase (ICMT) family
EggNOG OGs1RECR@1224,2U6MH@28211,4BA0U@82115,COG2020@1,COG2020@2
COG Functional cat.O
Best tax levelRhizobiaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size351
Cds size348
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.4055316-CDS-M-pyrifera_M_contig111965:235..5831622815633.4055316-CDS-M-pyrifera_M_contig111965:235..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111965 236..583 -
1692277497.1916714-CDS-M-pyrifera_M_contig111965:235..5831692277497.1916714-CDS-M-pyrifera_M_contig111965:235..583Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111965 236..583 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.4193397-UTR-M-pyrifera_M_contig111965:583..5861622815633.4193397-UTR-M-pyrifera_M_contig111965:583..586Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111965 584..586 -
1692277497.203206-UTR-M-pyrifera_M_contig111965:583..5861692277497.203206-UTR-M-pyrifera_M_contig111965:583..586Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111965 584..586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111965.2507.1prot_M-pyrifera_M_contig111965.2507.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111965 236..583 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111965.2507.1

>prot_M-pyrifera_M_contig111965.2507.1 ID=prot_M-pyrifera_M_contig111965.2507.1|Name=mRNA_M-pyrifera_M_contig111965.2507.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=116bp
MEEHQLVTSGPYALARHPMYTAFFIFIFSLFFTLSTWVTPTLALLVLLYA
ASRIGREERLMIHLFGDQYLTYKSRTGAFLPFRFPCCDCGLTNAQALEAL
QNTHQDSSLIPQTEA*
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mRNA from alignment at M-pyrifera_M_contig111965:236..586-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111965.2507.1 ID=mRNA_M-pyrifera_M_contig111965.2507.1|Name=mRNA_M-pyrifera_M_contig111965.2507.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=351bp|location=Sequence derived from alignment at M-pyrifera_M_contig111965:236..586- (Macrocystis pyrifera P11B4 male)
ATAATGGAGGAGCATCAGCTGGTCACGAGTGGCCCATATGCCTTGGCACG CCATCCAATGTACACCGCCTTCTTCATCTTCATCTTCTCCCTCTTTTTCA CTCTATCCACATGGGTAACCCCAACGCTTGCCCTTCTCGTCCTCCTCTAT GCCGCTTCCCGTATTGGTAGGGAAGAACGCCTGATGATTCATCTCTTTGG AGACCAATACTTGACCTACAAATCCAGGACGGGAGCGTTCCTCCCATTCC GTTTTCCTTGCTGCGACTGTGGCCTCACAAACGCACAAGCCCTTGAAGCA CTCCAAAACACCCACCAAGATTCCTCTCTCATTCCACAGACCGAAGCCTA G
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111965:236..586-

>mRNA_M-pyrifera_M_contig111965.2507.1 ID=mRNA_M-pyrifera_M_contig111965.2507.1|Name=mRNA_M-pyrifera_M_contig111965.2507.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig111965:236..586- (Macrocystis pyrifera P11B4 male)
ATGGAGGAGCATCAGCTGGTCACGAGTGGCCCATATGCCTTGGCACGCCA
TCCAATGTACACCGCCTTCTTCATCTTCATCTTCTCCCTCTTTTTCACTC
TATCCACATGGGTAACCCCAACGCTTGCCCTTCTCGTCCTCCTCTATGCC
GCTTCCCGTATTGGTAGGGAAGAACGCCTGATGATTCATCTCTTTGGAGA
CCAATACTTGACCTACAAATCCAGGACGGGAGCGTTCCTCCCATTCCGTT
TTCCTTGCTGCGACTGTGGCCTCACAAACGCACAAGCCCTTGAAGCACTC
CAAAACACCCACCAAGATTCCTCTCTCATTCCACAGACCGAAGCCTAGAT
GGAGGAGCATCAGCTGGTCACGAGTGGCCCATATGCCTTGGCACGCCATC
CAATGTACACCGCCTTCTTCATCTTCATCTTCTCCCTCTTTTTCACTCTA
TCCACATGGGTAACCCCAACGCTTGCCCTTCTCGTCCTCCTCTATGCCGC
TTCCCGTATTGGTAGGGAAGAACGCCTGATGATTCATCTCTTTGGAGACC
AATACTTGACCTACAAATCCAGGACGGGAGCGTTCCTCCCATTCCGTTTT
CCTTGCTGCGACTGTGGCCTCACAAACGCACAAGCCCTTGAAGCACTCCA
AAACACCCACCAAGATTCCTCTCTCATTCCACAGACCGAAGCCTAG
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