mRNA_M-pyrifera_M_contig111964.2506.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111964.2506.1
Unique NamemRNA_M-pyrifera_M_contig111964.2506.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111964.2506.1 vs. uniprot
Match: A0A7C8ERU6_9BACT (Glycosyltransferase family 9 protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C8ERU6_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 1.100e-16
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 1
Query:   28 MRILVAQVTRMGDMLQTTPMIRAIKHENPGASITVMVRDMGRIIAERNPDIDDVIVY 198
            MRILVAQ+TRMGD+LQT+P+I A+K ++P A IT MVR MG+ I ERNPD+DDVIVY
Sbjct:    2 MRILVAQMTRMGDVLQTSPLICALKQQHPDAHITAMVRRMGKPIVERNPDVDDVIVY 58          
BLAST of mRNA_M-pyrifera_M_contig111964.2506.1 vs. uniprot
Match: A0A7Y5C6J7_9BACT (Glycosyltransferase family 9 protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7Y5C6J7_9BACT)

HSP 1 Score: 82.0 bits (201), Expect = 1.100e-16
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 1
Query:   31 RILVAQVTRMGDMLQTTPMIRAIKHENPGASITVMVRDMGRIIAERNPDIDDVIVY 198
            RILVAQ+TRMGD+LQT+P++RA+K  +P A IT MVR MG+ IAE NPDIDDVIVY
Sbjct:    5 RILVAQMTRMGDVLQTSPLVRALKQRHPDAHITAMVRRMGKAIAECNPDIDDVIVY 60          
BLAST of mRNA_M-pyrifera_M_contig111964.2506.1 vs. uniprot
Match: A0A831UIR7_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A831UIR7_9BACT)

HSP 1 Score: 75.1 bits (183), Expect = 1.400e-15
Identity = 35/57 (61.40%), Postives = 46/57 (80.70%), Query Frame = 1
Query:   28 MRILVAQVTRMGDMLQTTPMIRAIKHENPGASITVMVRDMGRIIAERNPDIDDVIVY 198
            MR+LV Q TRMGD+LQT+P+IR I+  +P A I V+VR MG+ I ERNPD+D+VIV+
Sbjct:    1 MRVLVLQTTRMGDVLQTSPLIRGIRRNDPDAHIAVVVRRMGKAIVERNPDVDEVIVH 57          
BLAST of mRNA_M-pyrifera_M_contig111964.2506.1 vs. uniprot
Match: A0A7V2Y6Y3_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2Y6Y3_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 1.060e-13
Identity = 35/57 (61.40%), Postives = 47/57 (82.46%), Query Frame = 1
Query:   28 MRILVAQVTRMGDMLQTTPMIRAIKHENPGASITVMVRDMGRIIAERNPDIDDVIVY 198
            MRILV Q TRMGD+LQTTP+IRA++ + P A I  MVR+MG+ +A RNPDI++V+V+
Sbjct:    1 MRILVMQTTRMGDVLQTTPLIRALRRKYPDAHIACMVRNMGKAVALRNPDINEVLVH 57          
BLAST of mRNA_M-pyrifera_M_contig111964.2506.1 vs. uniprot
Match: A0A7V2X7C8_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7V2X7C8_9BACT)

HSP 1 Score: 70.5 bits (171), Expect = 1.200e-13
Identity = 32/56 (57.14%), Postives = 45/56 (80.36%), Query Frame = 1
Query:   31 RILVAQVTRMGDMLQTTPMIRAIKHENPGASITVMVRDMGRIIAERNPDIDDVIVY 198
            R+L+ Q TRMGD LQT+P+IR ++   P A I VMVR+MG+ IAER+PD+++VI+Y
Sbjct:    3 RVLIMQTTRMGDTLQTSPLIRQVRQTWPDAHIAVMVRNMGKTIAERHPDVNEVILY 58          
BLAST of mRNA_M-pyrifera_M_contig111964.2506.1 vs. uniprot
Match: A0A7C4UWV4_9BACT (Glycosyltransferase family 9 protein (Fragment) n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C4UWV4_9BACT)

HSP 1 Score: 62.8 bits (151), Expect = 6.510e-10
Identity = 29/57 (50.88%), Postives = 42/57 (73.68%), Query Frame = 1
Query:   28 MRILVAQVTRMGDMLQTTPMIRAIKHENPGASITVMVRDMGRIIAERNPDIDDVIVY 198
            M ILV Q  R+GD LQTTP++R I+ + P ++IT+M+R M   +A+ NPDI+D I+Y
Sbjct:    1 MNILVLQTARIGDTLQTTPLLRNIRKKYPESNITLMIRPMSEPVAKANPDINDYIIY 57          
BLAST of mRNA_M-pyrifera_M_contig111964.2506.1 vs. uniprot
Match: A0A254TGW2_9BURK (Glycosyl transferase n=1 Tax=Noviherbaspirillum denitrificans TaxID=1968433 RepID=A0A254TGW2_9BURK)

HSP 1 Score: 56.6 bits (135), Expect = 9.530e-8
Identity = 29/65 (44.62%), Postives = 39/65 (60.00%), Query Frame = 1
Query:    4 IGGTRELTMRILVAQVTRMGDMLQTTPMIRAIKHENPGASITVMVRDMGRIIAERNPDIDDVIVY 198
            I G+ E   RIL  ++  MGD+L TTP IRA++   PG  IT++    G  +A   P+IDD IVY
Sbjct:    2 IAGSWEQVKRILCIRLDYMGDVLMTTPAIRALRQSLPGCEITLLTSGSGAAVARYIPEIDDTIVY 66          
BLAST of mRNA_M-pyrifera_M_contig111964.2506.1 vs. uniprot
Match: A0A1G1MN01_9BACT (Lipopolysaccharide heptosyltransferase II (Fragment) n=1 Tax=Omnitrophica WOR_2 bacterium RBG_13_44_8b TaxID=1801836 RepID=A0A1G1MN01_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 1.830e-7
Identity = 27/63 (42.86%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   10 GTRELTMRILVAQVTRMGDMLQTTPMIRAIKHENPGASITVMVRDMGRIIAERNPDIDDVIVY 198
            G+REL  RIL+ +  ++GD+L +TP+I+A++   P A I +MV    + I E NP +D+VI+Y
Sbjct:  136 GSRELYKRILIVRTDKIGDVLLSTPVIKALRENYPNAYIAMMVCPYTKDIVEDNPYLDEVIIY 198          
BLAST of mRNA_M-pyrifera_M_contig111964.2506.1 vs. uniprot
Match: A0A496RLM2_9BACT (Lipopolysaccharide heptosyltransferase II n=1 Tax=Candidatus Omnitrophica bacterium TaxID=2035772 RepID=A0A496RLM2_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 3.450e-7
Identity = 26/62 (41.94%), Postives = 42/62 (67.74%), Query Frame = 1
Query:   13 TRELTMRILVAQVTRMGDMLQTTPMIRAIKHENPGASITVMVRDMGRIIAERNPDIDDVIVY 198
            TR    RIL+ +  R+GD+L +TP+I+A++   PGA + +MVR   + I E NP +D++I+Y
Sbjct:  334 TRSNFQRILIVRTDRIGDVLLSTPVIKALRDAYPGAYLAMMVRPYTKEIIEGNPYLDEIIIY 395          
BLAST of mRNA_M-pyrifera_M_contig111964.2506.1 vs. uniprot
Match: A0A1F4QUY4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=candidate division NC10 bacterium RIFCSPLOWO2_12_FULL_66_18 TaxID=1801659 RepID=A0A1F4QUY4_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 6.310e-7
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 1
Query:   19 ELTMRILVAQVTRMGDMLQTTPMIRAIKHENPGASITVMVRDMGRIIAERNPDIDDVIVY 198
            E   RILV +   +GD+L TTP +RA++   P A +T++V +  R + ERNPD+DDV  Y
Sbjct:   15 EKVRRILVVRKDNIGDVLCTTPALRALRRAFPEAYLTMLVSEHCRPVLERNPDLDDVFTY 74          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111964.2506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C8ERU6_9BACT1.100e-1670.18Glycosyltransferase family 9 protein n=1 Tax=Candi... [more]
A0A7Y5C6J7_9BACT1.100e-1671.43Glycosyltransferase family 9 protein n=1 Tax=Candi... [more]
A0A831UIR7_9BACT1.400e-1561.40Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A0A7V2Y6Y3_9BACT1.060e-1361.40Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
A0A7V2X7C8_9BACT1.200e-1357.14Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A0A7C4UWV4_9BACT6.510e-1050.88Glycosyltransferase family 9 protein (Fragment) n=... [more]
A0A254TGW2_9BURK9.530e-844.62Glycosyl transferase n=1 Tax=Noviherbaspirillum de... [more]
A0A1G1MN01_9BACT1.830e-742.86Lipopolysaccharide heptosyltransferase II (Fragmen... [more]
A0A496RLM2_9BACT3.450e-741.94Lipopolysaccharide heptosyltransferase II n=1 Tax=... [more]
A0A1F4QUY4_9BACT6.310e-745.00Uncharacterized protein (Fragment) n=1 Tax=candida... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111964contigM-pyrifera_M_contig111964:329..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size198
Cds size171
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.3559365-UTR-M-pyrifera_M_contig111964:328..3551622815633.3559365-UTR-M-pyrifera_M_contig111964:328..355Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111964 329..355 +
1692277497.1567268-UTR-M-pyrifera_M_contig111964:328..3551692277497.1567268-UTR-M-pyrifera_M_contig111964:328..355Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111964 329..355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.3680193-CDS-M-pyrifera_M_contig111964:355..5261622815633.3680193-CDS-M-pyrifera_M_contig111964:355..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111964 356..526 +
1692277497.1776638-CDS-M-pyrifera_M_contig111964:355..5261692277497.1776638-CDS-M-pyrifera_M_contig111964:355..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111964 356..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111964.2506.1prot_M-pyrifera_M_contig111964.2506.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111964 356..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111964.2506.1

>prot_M-pyrifera_M_contig111964.2506.1 ID=prot_M-pyrifera_M_contig111964.2506.1|Name=mRNA_M-pyrifera_M_contig111964.2506.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=57bp
MRILVAQVTRMGDMLQTTPMIRAIKHENPGASITVMVRDMGRIIAERNPD
IDDVIVY
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mRNA from alignment at M-pyrifera_M_contig111964:329..526+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111964.2506.1 ID=mRNA_M-pyrifera_M_contig111964.2506.1|Name=mRNA_M-pyrifera_M_contig111964.2506.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=198bp|location=Sequence derived from alignment at M-pyrifera_M_contig111964:329..526+ (Macrocystis pyrifera P11B4 male)
GTTATTGGCGGCACGCGAGAGCTGACGATGCGGATTCTGGTTGCACAAGT CACGCGGATGGGCGACATGTTGCAGACGACGCCCATGATCCGAGCGATCA AGCATGAAAACCCCGGTGCATCCATCACGGTGATGGTTCGTGACATGGGC AGAATCATTGCCGAACGCAACCCCGACATCGACGACGTAATCGTTTAC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111964:329..526+

>mRNA_M-pyrifera_M_contig111964.2506.1 ID=mRNA_M-pyrifera_M_contig111964.2506.1|Name=mRNA_M-pyrifera_M_contig111964.2506.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig111964:329..526+ (Macrocystis pyrifera P11B4 male)
ATGCGGATTCTGGTTGCACAAGTCACGCGGATGGGCGACATGTTGCAGAC
GACGCCCATGATCCGAGCGATCAAGCATGAAAACCCCGGTGCATCCATCA
CGGTGATGGTTCGTGACATGGGCAGAATCATTGCCGAACGCAACCCCGAC
ATCGACGACGTAATCGTTTACATGCGGATTCTGGTTGCACAAGTCACGCG
GATGGGCGACATGTTGCAGACGACGCCCATGATCCGAGCGATCAAGCATG
AAAACCCCGGTGCATCCATCACGGTGATGGTTCGTGACATGGGCAGAATC
ATTGCCGAACGCAACCCCGACATCGACGACGTAATCGTTTAC
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