mRNA_M-pyrifera_M_contig111951.2501.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111951.2501.1
Unique NamemRNA_M-pyrifera_M_contig111951.2501.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111951.2501.1 vs. uniprot
Match: A0A0S4IPL7_BODSA (Uncharacterized protein n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4IPL7_BODSA)

HSP 1 Score: 111 bits (278), Expect = 3.620e-27
Identity = 59/137 (43.07%), Postives = 79/137 (57.66%), Query Frame = 1
Query:    1 DESMNLVNEHDMGREIQLSFYAAPRGFDTPGKNCSREQPKSSPYYMFPWNPIGAGDIVGTTGVIEELVVGSENTSMYIRTRPKLWACDNVPCECTFERWIVLDGRGAIVTAQLNNFRTDNEPWAPQGFGQELPAVYT 411
            D ++NL+N HD GRE+Q S+YA P  +          Q    P+   PWNPI +GD  G +  +  L + +  TS+Y++ RP  WA +NVPC CTFE +I LD  GA V  +L NFR D   +  +   QELPAVYT
Sbjct:   50 DPTINLINCHDQGREVQQSYYAGPDPY-------RGAQWSGGPW---PWNPISSGDAFGHSSTV--LSLNNTGTSLYLKARPLQWALNNVPCNCTFETYITLDANGAFVRNRLINFREDETDYGARD--QELPAVYT 172          
BLAST of mRNA_M-pyrifera_M_contig111951.2501.1 vs. uniprot
Match: A0A7X7TYF1_9BACT (Right-handed parallel beta-helix repeat-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7X7TYF1_9BACT)

HSP 1 Score: 110 bits (275), Expect = 1.930e-25
Identity = 55/137 (40.15%), Postives = 79/137 (57.66%), Query Frame = 1
Query:    4 ESMNLVNEHDMGREIQLSFYAAPRGFDTPGKNCSREQPKSSPYYMFPWNPIGAGDIVGTTGVIEELVVGSENTSMYIRTRPKLWACDNVPCECTFERWIVLDGRGAIVTAQLNNFRTDNEPWAPQGFGQELPAVYTN 414
            + +N++N HD GR+IQ+SFY+ P  F   GK  S+       +    WNPI +GD  G   V+ E    ++  S+Y++  P  W  DN P ECTFE WI L    A+V  +++N R+D   ++  G GQELPA+YTN
Sbjct:  683 DKVNMINSHDWGRQIQMSFYSGPVPFAPNGKQPSKT------WAALGWNPIQSGDCAGNRSVVTEH--RNDGASLYVKCIPMQWPLDNEPGECTFESWIRLHANTAVVRCRIDNHRSDKTQYS--GRGQELPAIYTN 809          
BLAST of mRNA_M-pyrifera_M_contig111951.2501.1 vs. uniprot
Match: A0A7W1VZN7_9BACT (Uncharacterized protein n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A7W1VZN7_9BACT)

HSP 1 Score: 107 bits (267), Expect = 2.320e-24
Identity = 53/137 (38.69%), Postives = 79/137 (57.66%), Query Frame = 1
Query:    4 ESMNLVNEHDMGREIQLSFYAAPRGFDTPGKNCSREQPKSSPYYMFPWNPIGAGDIVGTTGVIEELVVGSENTSMYIRTRPKLWACDNVPCECTFERWIVLDGRGAIVTAQLNNFRTDNEPWAPQGFGQELPAVYTN 414
            +S+N++N  D GR++Q+SFY+ P  F+  GK  ++       +    WNPI +GD+ G    + E    ++   +Y++  P  W  DNVP ECT+E WI LDG  A V +++ N R D   +  +G  QELPAVYTN
Sbjct:  756 DSINMINNWDWGRQVQMSFYSGPVPFEPDGKKANKA------WTFIGWNPIQSGDVAGNRSKVLEYK--NDGKEIYVKCIPMHWPLDNVPGECTYECWITLDGNAAKVRSRIVNNRPDRTQYPARG--QELPAVYTN 882          
BLAST of mRNA_M-pyrifera_M_contig111951.2501.1 vs. uniprot
Match: A0A3D3UWX2_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A3D3UWX2_9BACT)

HSP 1 Score: 105 bits (262), Expect = 4.150e-24
Identity = 56/135 (41.48%), Postives = 76/135 (56.30%), Query Frame = 1
Query:   10 MNLVNEHDMGREIQLSFYAAPRGFDTPGKNCSREQPKSSPYYMFPWNPIGAGDIVGTTGVIEELVVGSENTSMYIRTRPKLWACDNVPCECTFERWIVLDGRGAIVTAQLNNFRTDNEPWAPQGFGQELPAVYTN 414
            +N++N HD GR+IQ+SFY+ P  F   GK  S+       +    WNPI +GD  G    I E    ++  S+Y++  P  W  DN P ECTFE WI L+     V +++ N RTD   ++  G GQELPAVYTN
Sbjct:   31 INIINNHDWGRQIQMSFYSGPVPFTPGGKQPSKT------WAGLGWNPIQSGDYAGNRSRIVEY--RNDGKSIYVKCVPMQWPLDNEPGECTFESWIKLEENVVKVRSRIKNHRTDTTQYS--GRGQELPAVYTN 155          
BLAST of mRNA_M-pyrifera_M_contig111951.2501.1 vs. uniprot
Match: A0A7M2X0F4_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7M2X0F4_9BACT)

HSP 1 Score: 104 bits (260), Expect = 9.630e-24
Identity = 56/138 (40.58%), Postives = 75/138 (54.35%), Query Frame = 1
Query:    1 DESMNLVNEHDMGREIQLSFYAAPRGFDTPGKNCSREQPKSSPYYMFPWNPIGAGDIVGTTGVIEELVVGSENTSMYIRTRPKLWACDNVPCECTFERWIVLDGRGAIVTAQLNNFRTDNEPWAPQGFGQELPAVYTN 414
            DES NL+N +D+GR++Q+S+YA P  +   G      Q     +    WNPI  GD  G    I E    ++  ++YI+  P  WA D+VP ECTFE WI L+G    V  ++N  R D   W  +   QELPAVYTN
Sbjct:   56 DESKNLINSYDLGRQVQMSYYAGPVPYTVAG-----HQGPPDAWKHIGWNPIQVGDCYGNPAKIIEH--RNDGKTLYIKCLPMQWALDDVPGECTFECWIELEGPAVRVRGRVNMSRADKTQWPARN--QELPAVYTN 184          
BLAST of mRNA_M-pyrifera_M_contig111951.2501.1 vs. uniprot
Match: A0A3E1EDZ2_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A3E1EDZ2_9BACT)

HSP 1 Score: 101 bits (251), Expect = 1.930e-22
Identity = 50/134 (37.31%), Postives = 77/134 (57.46%), Query Frame = 1
Query:   13 NLVNEHDMGREIQLSFYAAPRGFDTPGKNCSREQPKSSPYYMFPWNPIGAGDIVGTTGVIEELVVGSENTSMYIRTRPKLWACDNVPCECTFERWIVLDGRGAIVTAQLNNFRTDNEPWAPQGFGQELPAVYTN 414
            NL+N HD GR++Q+SFY+ P  F + G+  ++       +    WNP+  GD    T  I  L   +   S+++++RP  W  +N+P ECTF+ W+ LDG      A+L N R+D++ +  Q   QELPAVY+N
Sbjct:   70 NLINSHDFGRQVQMSFYSGPVPFSSNGQQPAKH------WEHLGWNPVQTGDDFQNTSTI--LAHENSGRSLHVKSRPLQWPLNNIPGECTFDSWLTLDGCTVTARARLVNARSDHQQY--QARHQELPAVYSN 193          
BLAST of mRNA_M-pyrifera_M_contig111951.2501.1 vs. uniprot
Match: A0A847JZI5_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Chthonomonadales bacterium TaxID=2282151 RepID=A0A847JZI5_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 9.490e-22
Identity = 55/137 (40.15%), Postives = 75/137 (54.74%), Query Frame = 1
Query:   13 NLVNEHDMGREIQLSFYAAPRGFDTPGKNCSREQPKSSPYYMFPWNPIGAGDIVGT-TGVIEELVVGSENTSMYIRTRPKLWACDNVPCECTFERWIVL--DGRGAIVTAQLNNFRTDNEPWAPQGFGQELPAVYTN 414
            N++N HD+GR+IQ S+Y+ P  +   GK       KS  +  FPWNPI  GD     + V+E  +V  E   +Y++T P LW  +N P EC  E WI L  DG      A+L N R+D   +  +   QE+PAVYTN
Sbjct:   56 NIINSHDLGRQIQQSYYSGPPNYQREGKQ------KSPAWASFPWNPIQTGDAFHNGSKVLEHRIVNGE---LYVKTIPMLWPMNNDPGECVMETWIRLLPDGPKFQYRARLTNHRSDTTQY--RAHNQEVPAVYTN 181          
BLAST of mRNA_M-pyrifera_M_contig111951.2501.1 vs. uniprot
Match: A0A522UJ36_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A522UJ36_9BACT)

HSP 1 Score: 98.2 bits (243), Expect = 2.400e-21
Identity = 53/133 (39.85%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   13 NLVNEHDMGREIQLSFYAAPRGFDTPGKNCSREQPKSSPYYMFPWNPIGAGDIVGTTGVIEELVVGSENTSMYIRTRPKLWACDNVPCECTFERWIVLDGRGAIVTAQLNNFRTDNEPWAPQGFGQELPAVYT 411
            NL+N HD GR++QLSFY+ P  F  PG   S+       +    WNPI AGD  G    + E    ++ T++ ++  P +W  +NVP ECTFE    L G+   V  +L+N R D   ++  G  QELPAVYT
Sbjct:   55 NLINSHDWGRQVQLSFYSGPNPFQPPGSTLSKA------WAGLGWNPIQAGDCYGHGSKVLEH--HNDGTTLRVKCVPMIWPLNNVPAECTFETVYRLAGKTVEVDCRLDNTRQDQTQYS--GRNQELPAVYT 177          
BLAST of mRNA_M-pyrifera_M_contig111951.2501.1 vs. uniprot
Match: A0A1M3HKK9_9SPHI (Uncharacterized protein n=1 Tax=Sphingobacteriales bacterium 50-39 TaxID=1895841 RepID=A0A1M3HKK9_9SPHI)

HSP 1 Score: 96.7 bits (239), Expect = 1.360e-20
Identity = 51/135 (37.78%), Postives = 77/135 (57.04%), Query Frame = 1
Query:   13 NLVNEHDMGREIQLSFYAAPRGFDTPGKNCSREQPKSSPYYM-FPWNPIGAGDIVGTTGVIEELVVGSENTSMYIRTRPKLWACDNVPCECTFERWIVLDGRGAIVTAQLNNFRTDNEPWAPQGFGQELPAVYTN 414
            N++N +D+GR++Q+SFY+ P  ++  GK       K++P ++   WNPI +GD+ G    I  L   S    +Y++  P  W   NVP ECT+E WI L+G    V +++ N R D   +  +   QELPAVYTN
Sbjct:   31 NMINNYDLGRQVQMSFYSGPVPYEPDGK-------KANPAWVSIGWNPIQSGDVAGNHSRI--LAFTSGRNEIYVKCIPMHWPLTNVPGECTYECWIRLEGNTVKVRSRIVNHRPDTTQFPARN--QELPAVYTN 154          
BLAST of mRNA_M-pyrifera_M_contig111951.2501.1 vs. uniprot
Match: A0A353P567_9BACT (LamGL domain-containing protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A353P567_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 2.420e-20
Identity = 54/134 (40.30%), Postives = 75/134 (55.97%), Query Frame = 1
Query:   13 NLVNEHDMGREIQLSFYAAPRGFDTPGKNCSREQPKSSPYYMFPWNPIGAGDIVGTTGVIEELVVGSENTSMYIRTRPKLWACDNVPCECTFERWIVLDGRGAIVTAQLNNFRTDNEPWAPQGFGQELPAVYTN 414
            ++VN +D+GREIQ S+Y+ P  F+  G N S           + WNP+ AGD  G+  + E L   ++  S+Y++  PK W   NV  EC  E WI L+G  AIV  +L N R+D   +    + QELPAVYTN
Sbjct:   52 DIVNNYDLGREIQQSYYSGPIPFE--GANWSGSD--------WSWNPVAAGDKCGS--ISEVLEWSNDGGSIYVKRIPKQWGLCNVASECIMEEWIRLEGNVAIVRCKLTNNRSDTTFYP--AYNQELPAVYTN 171          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111951.2501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S4IPL7_BODSA3.620e-2743.07Uncharacterized protein n=1 Tax=Bodo saltans TaxID... [more]
A0A7X7TYF1_9BACT1.930e-2540.15Right-handed parallel beta-helix repeat-containing... [more]
A0A7W1VZN7_9BACT2.320e-2438.69Uncharacterized protein n=1 Tax=Chitinophagaceae b... [more]
A0A3D3UWX2_9BACT4.150e-2441.48Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A7M2X0F4_9BACT9.630e-2440.58Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A3E1EDZ2_9BACT1.930e-2237.31Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A847JZI5_9BACT9.490e-2240.15Uncharacterized protein (Fragment) n=1 Tax=Chthono... [more]
A0A522UJ36_9BACT2.400e-2139.85Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A1M3HKK9_9SPHI1.360e-2037.78Uncharacterized protein n=1 Tax=Sphingobacteriales... [more]
A0A353P567_9BACT2.420e-2040.30LamGL domain-containing protein n=2 Tax=Planctomyc... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111951contigM-pyrifera_M_contig111951:6..419 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score95.1
Seed ortholog evalue2.6e-17
Seed eggNOG ortholog497964.CfE428DRAFT_0146
Hectar predicted targeting categoryother localisation
EggNOG OGs2DBU5@1,2ZB47@2,46VTT@74201
Best tax levelVerrucomicrobia
Best eggNOG OGNA|NA|NA
Exons1
Model size414
Cds size405
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.0598907-UTR-M-pyrifera_M_contig111951:5..141622815633.0598907-UTR-M-pyrifera_M_contig111951:5..14Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111951 6..14 +
1692277496.986176-UTR-M-pyrifera_M_contig111951:5..141692277496.986176-UTR-M-pyrifera_M_contig111951:5..14Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111951 6..14 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815633.0707197-CDS-M-pyrifera_M_contig111951:14..4191622815633.0707197-CDS-M-pyrifera_M_contig111951:14..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111951 15..419 +
1692277496.9982805-CDS-M-pyrifera_M_contig111951:14..4191692277496.9982805-CDS-M-pyrifera_M_contig111951:14..419Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111951 15..419 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111951.2501.1prot_M-pyrifera_M_contig111951.2501.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111951 15..419 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111951.2501.1

>prot_M-pyrifera_M_contig111951.2501.1 ID=prot_M-pyrifera_M_contig111951.2501.1|Name=mRNA_M-pyrifera_M_contig111951.2501.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=135bp
MNLVNEHDMGREIQLSFYAAPRGFDTPGKNCSREQPKSSPYYMFPWNPIG
AGDIVGTTGVIEELVVGSENTSMYIRTRPKLWACDNVPCECTFERWIVLD
GRGAIVTAQLNNFRTDNEPWAPQGFGQELPAVYTN
back to top

mRNA from alignment at M-pyrifera_M_contig111951:6..419+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111951.2501.1 ID=mRNA_M-pyrifera_M_contig111951.2501.1|Name=mRNA_M-pyrifera_M_contig111951.2501.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig111951:6..419+ (Macrocystis pyrifera P11B4 male)
GATGAAAGTATGAATCTTGTGAATGAACATGATATGGGGCGTGAAATCCA ATTGAGTTTCTATGCGGCTCCTCGAGGCTTCGATACGCCTGGAAAAAATT GCTCCAGGGAGCAACCGAAATCTTCGCCTTACTACATGTTTCCCTGGAAC CCTATTGGGGCTGGAGACATTGTAGGTACCACAGGGGTTATAGAGGAGTT AGTTGTGGGAAGTGAGAATACGTCAATGTACATTCGCACGCGCCCAAAGC TTTGGGCATGCGATAACGTCCCATGTGAGTGCACATTTGAACGATGGATT GTACTTGATGGGAGAGGTGCCATTGTTACTGCGCAACTCAACAATTTTAG AACTGATAACGAACCTTGGGCACCTCAAGGATTTGGACAAGAGCTCCCAG CGGTGTACACGAAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig111951:6..419+

>mRNA_M-pyrifera_M_contig111951.2501.1 ID=mRNA_M-pyrifera_M_contig111951.2501.1|Name=mRNA_M-pyrifera_M_contig111951.2501.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=810bp|location=Sequence derived from alignment at M-pyrifera_M_contig111951:6..419+ (Macrocystis pyrifera P11B4 male)
ATGAATCTTGTGAATGAACATGATATGGGGCGTGAAATCCAATTGAGTTT
CTATGCGGCTCCTCGAGGCTTCGATACGCCTGGAAAAAATTGCTCCAGGG
AGCAACCGAAATCTTCGCCTTACTACATGTTTCCCTGGAACCCTATTGGG
GCTGGAGACATTGTAGGTACCACAGGGGTTATAGAGGAGTTAGTTGTGGG
AAGTGAGAATACGTCAATGTACATTCGCACGCGCCCAAAGCTTTGGGCAT
GCGATAACGTCCCATGTGAGTGCACATTTGAACGATGGATTGTACTTGAT
GGGAGAGGTGCCATTGTTACTGCGCAACTCAACAATTTTAGAACTGATAA
CGAACCTTGGGCACCTCAAGGATTTGGACAAGAGCTCCCAGCGGTGTACA
CGAATATGAATCTTGTGAATGAACATGATATGGGGCGTGAAATCCAATTG
AGTTTCTATGCGGCTCCTCGAGGCTTCGATACGCCTGGAAAAAATTGCTC
CAGGGAGCAACCGAAATCTTCGCCTTACTACATGTTTCCCTGGAACCCTA
TTGGGGCTGGAGACATTGTAGGTACCACAGGGGTTATAGAGGAGTTAGTT
GTGGGAAGTGAGAATACGTCAATGTACATTCGCACGCGCCCAAAGCTTTG
GGCATGCGATAACGTCCCATGTGAGTGCACATTTGAACGATGGATTGTAC
TTGATGGGAGAGGTGCCATTGTTACTGCGCAACTCAACAATTTTAGAACT
GATAACGAACCTTGGGCACCTCAAGGATTTGGACAAGAGCTCCCAGCGGT
GTACACGAAT
back to top