mRNA_M-pyrifera_M_contig111944.2498.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111944.2498.1
Unique NamemRNA_M-pyrifera_M_contig111944.2498.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111944.2498.1 vs. uniprot
Match: A0A6A3FMV9_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3FMV9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.650e-10
Identity = 29/83 (34.94%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:   10 LARRWPQLDAAIETNGDLFFQHLPFACADAALAAYYFLMPGSRTLYTPSFRIELFTIIVRLLSGMEVTPLAVANIAEQLFPDE 258
            ++ ++ ++ AA+  N D  F+  P+A A A    +++L PGSR LYTP F+ +++  + +LL G+++TP +V ++  Q FP+E
Sbjct:  240 ISSKYVKMVAALRGNMDYLFRVYPYAIASAVCWGFHYLFPGSRHLYTPEFKNDVYLFVCQLLLGLKITPASVQSMRRQYFPEE 322
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BLAST of mRNA_M-pyrifera_M_contig111944.2498.1 vs. uniprot
Match: K3WX19_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WX19_GLOUD)

HSP 1 Score: 63.2 bits (152), Expect = 1.070e-9
Identity = 27/86 (31.40%), Postives = 54/86 (62.79%), Query Frame = 1 
Query:    1 LQRLARRWPQLDAAIETNGDLFFQHLPFACADAALAAYYFLMPGSRTLYTPSFRIELFTIIVRLLSGMEVTPLAVANIAEQLFPDE 258
            +  ++ ++ ++ A++  N D  F+  P+A +      +Y+L PGSR LYTP F+ E++  +  LL G+++ P++V ++ ++ FPDE
Sbjct:  235 VDEISAKYVKMIASLHGNIDYIFRIYPYAVSSGVYWGFYYLFPGSRHLYTPEFKNEIYLFVCELLLGLKLCPVSVQSMRKEYFPDE 320
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BLAST of mRNA_M-pyrifera_M_contig111944.2498.1 vs. uniprot
Match: W2PFY7_PHYPN (Uncharacterized protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2PFY7_PHYPN)

HSP 1 Score: 62.4 bits (150), Expect = 2.000e-9
Identity = 27/83 (32.53%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:   10 LARRWPQLDAAIETNGDLFFQHLPFACADAALAAYYFLMPGSRTLYTPSFRIELFTIIVRLLSGMEVTPLAVANIAEQLFPDE 258
            ++ ++ ++ AA+  + D  F+  P+A A    + +Y+L PGSR LY+P F+ +++  + +LL G+++TP +V ++  Q FP+E
Sbjct:  237 ISAKYIKMVAALRGSMDYLFRVYPYAIASGICSGFYYLFPGSRHLYSPEFKNDVYLFVCQLLLGLKMTPASVQSMRRQYFPEE 319
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BLAST of mRNA_M-pyrifera_M_contig111944.2498.1 vs. uniprot
Match: V9DUP4_PHYPR (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=V9DUP4_PHYPR)

HSP 1 Score: 62.4 bits (150), Expect = 2.030e-9
Identity = 27/83 (32.53%), Postives = 54/83 (65.06%), Query Frame = 1 
Query:   10 LARRWPQLDAAIETNGDLFFQHLPFACADAALAAYYFLMPGSRTLYTPSFRIELFTIIVRLLSGMEVTPLAVANIAEQLFPDE 258
            ++ ++ ++ AA+  + D  F+  P+A A    + +Y+L PGSR LY+P F+ +++  + +LL G+++TP +V ++  Q FP+E
Sbjct:  443 ISAKYIKMVAALRGSMDYLFRVYPYAIASGICSGFYYLFPGSRHLYSPEFKNDVYLFVCQLLLGLKMTPASVQSMRRQYFPEE 525
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BLAST of mRNA_M-pyrifera_M_contig111944.2498.1 vs. uniprot
Match: A0A662XLQ3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XLQ3_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 9.760e-9
Identity = 28/86 (32.56%), Postives = 52/86 (60.47%), Query Frame = 1 
Query:    1 LQRLARRWPQLDAAIETNGDLFFQHLPFACADAALAAYYFLMPGSRTLYTPSFRIELFTIIVRLLSGMEVTPLAVANIAEQLFPDE 258
            +  L+ ++ ++ A +  + D  F+  P+A A      +++L PGSR LYTP F+ E++  + +LL G+++TP +V  +  Q FP+E
Sbjct:  290 VDELSAKYVKMVAMLHGSMDYLFRIYPYAVASGVCWGFHYLFPGSRHLYTPDFKNEVYLFVCQLLLGLKMTPTSVQAMRRQYFPEE 375
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BLAST of mRNA_M-pyrifera_M_contig111944.2498.1 vs. uniprot
Match: A0A225URT1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225URT1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 8.300e-8
Identity = 26/83 (31.33%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:   10 LARRWPQLDAAIETNGDLFFQHLPFACADAALAAYYFLMPGSRTLYTPSFRIELFTIIVRLLSGMEVTPLAVANIAEQLFPDE 258
            ++ ++ ++ AA+  + D  F+  P+A A      +Y+L PGSR LY+P F+ +++  + +LL G+++TP +V  +    FP+E
Sbjct:  123 ISAKYVKMVAALRGSMDYLFRIYPYAIASGVCWGFYYLFPGSRHLYSPEFKNDIYLFVCQLLLGLKMTPASVHAMRRLYFPEE 205
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111944.2498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6A3FMV9_9STRA1.650e-1034.94Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
K3WX19_GLOUD1.070e-931.40Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
W2PFY7_PHYPN2.000e-932.53Uncharacterized protein n=8 Tax=Phytophthora TaxID... [more]
V9DUP4_PHYPR2.030e-932.53Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A662XLQ3_9STRA9.760e-932.56Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A225URT1_9STRA8.300e-831.33Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111944contigM-pyrifera_M_contig111944:331..588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue7e-08
Seed eggNOG ortholog2880.D8LEG8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function
EggNOG OGs2CYBT@1,2S3FI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.9430802-CDS-M-pyrifera_M_contig111944:330..5881622815632.9430802-CDS-M-pyrifera_M_contig111944:330..588Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111944 331..588 -
1692277496.948794-CDS-M-pyrifera_M_contig111944:330..5881692277496.948794-CDS-M-pyrifera_M_contig111944:330..588Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111944 331..588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111944.2498.1prot_M-pyrifera_M_contig111944.2498.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111944 331..588 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111944.2498.1

>prot_M-pyrifera_M_contig111944.2498.1 ID=prot_M-pyrifera_M_contig111944.2498.1|Name=mRNA_M-pyrifera_M_contig111944.2498.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=86bp
LQRLARRWPQLDAAIETNGDLFFQHLPFACADAALAAYYFLMPGSRTLYT
PSFRIELFTIIVRLLSGMEVTPLAVANIAEQLFPDE
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mRNA from alignment at M-pyrifera_M_contig111944:331..588-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111944.2498.1 ID=mRNA_M-pyrifera_M_contig111944.2498.1|Name=mRNA_M-pyrifera_M_contig111944.2498.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=258bp|location=Sequence derived from alignment at M-pyrifera_M_contig111944:331..588- (Macrocystis pyrifera P11B4 male)
TTGCAACGATTGGCAAGACGTTGGCCACAACTTGATGCAGCGATCGAAAC
AAATGGTGATCTCTTTTTCCAACATCTTCCTTTTGCATGTGCTGATGCAG
CACTTGCTGCATACTACTTTCTCATGCCAGGATCCCGGACTCTGTATACC
CCATCATTCCGCATTGAGTTGTTCACTATTATTGTCAGACTCTTGTCTGG
GATGGAAGTTACTCCGCTTGCTGTTGCAAATATCGCAGAACAGCTCTTCC
CTGACGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111944:331..588-

>mRNA_M-pyrifera_M_contig111944.2498.1 ID=mRNA_M-pyrifera_M_contig111944.2498.1|Name=mRNA_M-pyrifera_M_contig111944.2498.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=516bp|location=Sequence derived from alignment at M-pyrifera_M_contig111944:331..588- (Macrocystis pyrifera P11B4 male)
TTGCAACGATTGGCAAGACGTTGGCCACAACTTGATGCAGCGATCGAAAC
AAATGGTGATCTCTTTTTCCAACATCTTCCTTTTGCATGTGCTGATGCAG
CACTTGCTGCATACTACTTTCTCATGCCAGGATCCCGGACTCTGTATACC
CCATCATTCCGCATTGAGTTGTTCACTATTATTGTCAGACTCTTGTCTGG
GATGGAAGTTACTCCGCTTGCTGTTGCAAATATCGCAGAACAGCTCTTCC
CTGACGAGTTGCAACGATTGGCAAGACGTTGGCCACAACTTGATGCAGCG
ATCGAAACAAATGGTGATCTCTTTTTCCAACATCTTCCTTTTGCATGTGC
TGATGCAGCACTTGCTGCATACTACTTTCTCATGCCAGGATCCCGGACTC
TGTATACCCCATCATTCCGCATTGAGTTGTTCACTATTATTGTCAGACTC
TTGTCTGGGATGGAAGTTACTCCGCTTGCTGTTGCAAATATCGCAGAACA
GCTCTTCCCTGACGAG
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