mRNA_M-pyrifera_M_contig111930.2493.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111930.2493.1
Unique NamemRNA_M-pyrifera_M_contig111930.2493.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111930.2493.1 vs. uniprot
Match: A0A518IT52_9BACT (Uncharacterized protein n=2 Tax=Rosistilla oblonga TaxID=2527990 RepID=A0A518IT52_9BACT)

HSP 1 Score: 286 bits (732), Expect = 5.170e-97
Identity = 134/144 (93.06%), Postives = 139/144 (96.53%), Query Frame = 1
Query:    1 RVLENGLKLAEATGANVEVVSLFAVLHDSRRINEVTDPEHGPRAAEFAAELRGSVFDLDDHELRLLYRACEGHTHERNHPDVTIQTCWDSDRLDLGRVGITPHPSRLCTEVAKRPETIKWADGRASFGVVPTFVLDEWGIDLEK 432
            RVLENGLKLA+ATGANV+VVSLFAVLHDSRRINEVTDPEHG RAAEFAAELRGS+ DLDDH+ RLLYRACEGHTHERNHPDVTIQTCWDSDRLDLGRVGI PHPSRLCTE AKRPETIKWADGRASFGVVPTFVLDEWGIDLE+
Sbjct:   42 RVLENGLKLADATGANVKVVSLFAVLHDSRRINEVTDPEHGTRAAEFAAELRGSLLDLDDHDFRLLYRACEGHTHERNHPDVTIQTCWDSDRLDLGRVGIMPHPSRLCTEFAKRPETIKWADGRASFGVVPTFVLDEWGIDLER 185          
BLAST of mRNA_M-pyrifera_M_contig111930.2493.1 vs. uniprot
Match: A0A517MNS4_9BACT (Uncharacterized protein n=2 Tax=Roseimaritima multifibrata TaxID=1930274 RepID=A0A517MNS4_9BACT)

HSP 1 Score: 263 bits (672), Expect = 6.270e-88
Identity = 123/146 (84.25%), Postives = 130/146 (89.04%), Query Frame = 1
Query:    1 RVLENGLKLAEATGANVEVVSLFAVLHDSRRINEVTDPEHGPRAAEFAAELRGSVFDLDDHELRLLYRACEGHTHERNHPDVTIQTCWDSDRLDLGRVGITPHPSRLCTEVAKRPETIKWADGRASFGVVPTFVLDEWGIDLEKER 438
            RVLENGL+LAE TGANV VVSLFAVLHDSRRI+EV DP+HGPRAAEFA ELRG+VFDLDD + RLLYRACEGHTHERNHPD TIQTCWDSDRLDLGRVGI PHPSRLCTE AKRPETI+WADGRA F  VP FV+DEW IDLE  R
Sbjct:   42 RVLENGLRLAEETGANVAVVSLFAVLHDSRRISEVADPQHGPRAAEFATELRGTVFDLDDQKFRLLYRACEGHTHERNHPDATIQTCWDSDRLDLGRVGIMPHPSRLCTEAAKRPETIRWADGRARFQFVPGFVVDEWEIDLEAGR 187          
BLAST of mRNA_M-pyrifera_M_contig111930.2493.1 vs. uniprot
Match: X0VX86_9ZZZZ (HD domain-containing protein n=1 Tax=marine sediment metagenome TaxID=412755 RepID=X0VX86_9ZZZZ)

HSP 1 Score: 239 bits (610), Expect = 1.090e-78
Identity = 110/141 (78.01%), Postives = 121/141 (85.82%), Query Frame = 1
Query:    1 RVLENGLKLAEATGANVEVVSLFAVLHDSRRINEVTDPEHGPRAAEFAAELRGSVFDLDDHELRLLYRACEGHTHERNHPDVTIQTCWDSDRLDLGRVGITPHPSRLCTEVAKRPETIKWADGRASFGVVPTFVLDEWGID 423
            RVLENG++LAE TG NVEVV LFAVLHDS+R+N+  DP+HGPRAAEFA ELRG  FDL DHE RLL +ACEGHTHER HPD+TIQTCWDSDRLDLGRVGITPHPSRLCT VAK P+TIKWAD RA    VP+FV DEWGI+
Sbjct:   31 RVLENGVRLAEETGTNVEVVKLFAVLHDSKRLNDGHDPDHGPRAAEFAVELRGRTFDLPDHEFRLLCKACEGHTHERTHPDITIQTCWDSDRLDLGRVGITPHPSRLCTNVAKLPKTIKWADHRAVGDYVPSFVTDEWGIE 171          
BLAST of mRNA_M-pyrifera_M_contig111930.2493.1 vs. uniprot
Match: A0A1U7CV41_9BACT (Uncharacterized protein n=2 Tax=Paludisphaera borealis TaxID=1387353 RepID=A0A1U7CV41_9BACT)

HSP 1 Score: 237 bits (605), Expect = 6.940e-78
Identity = 111/146 (76.03%), Postives = 122/146 (83.56%), Query Frame = 1
Query:    1 RVLENGLKLAEATGANVEVVSLFAVLHDSRRINEVTDPEHGPRAAEFAAELRGSVFDLDDHELRLLYRACEGHTHERNHPDVTIQTCWDSDRLDLGRVGITPHPSRLCTEVAKRPETIKWADGRASFGVVPTFVLDEWGIDLEKER 438
            RV ENGL LA  TGA VEVV LFAVLHDSRR+NE  DP+HGPRAAEFA  LRG +F+L DH   LL+RAC GHTHER HPDVTIQTCWDSDRLDLGRVGITPHPS LCTEVA+RPETI+WADGRASF  VP FV +EWGI+ ++ R
Sbjct:   31 RVYENGLHLAGETGAEVEVVRLFAVLHDSRRVNEGHDPDHGPRAAEFARTLRGRLFELPDHAFHLLHRACAGHTHERTHPDVTIQTCWDSDRLDLGRVGITPHPSLLCTEVARRPETIRWADGRASFRKVPEFVREEWGIEPDEIR 176          
BLAST of mRNA_M-pyrifera_M_contig111930.2493.1 vs. uniprot
Match: A0A5M6D5V2_9BACT (Uncharacterized protein n=1 Tax=Roseiconus nitratireducens TaxID=2605748 RepID=A0A5M6D5V2_9BACT)

HSP 1 Score: 236 bits (601), Expect = 2.550e-77
Identity = 107/142 (75.35%), Postives = 121/142 (85.21%), Query Frame = 1
Query:    1 RVLENGLKLAEATGANVEVVSLFAVLHDSRRINEVTDPEHGPRAAEFAAELRGSVFDLDDHELRLLYRACEGHTHERNHPDVTIQTCWDSDRLDLGRVGITPHPSRLCTEVAKRPETIKWADGRASFGVVPTFVLDEWGIDL 426
            RVLENGL+L + TGA+++VV+LFA+ HDSRR+NEVTDP HG R AE AA+LRG+ F LDDH   LLYRACEGHT ER HPDVT+QTCWD+DRLDLGRVGITPHPSRLCT VAKRP+TIKWADGRA F VVP FV  +WGI L
Sbjct:   31 RVLENGLRLGDETGADLDVVALFAIFHDSRRVNEVTDPNHGLRGAELAAQLRGTGFQLDDHAFGLLYRACEGHTDERTHPDVTVQTCWDADRLDLGRVGITPHPSRLCTAVAKRPQTIKWADGRARFAVVPEFVRTDWGIRL 172          
BLAST of mRNA_M-pyrifera_M_contig111930.2493.1 vs. uniprot
Match: A0A7C2K1B2_9PLAN (Uncharacterized protein n=1 Tax=Schlesneria paludicola TaxID=360056 RepID=A0A7C2K1B2_9PLAN)

HSP 1 Score: 233 bits (594), Expect = 3.400e-76
Identity = 109/146 (74.66%), Postives = 121/146 (82.88%), Query Frame = 1
Query:    1 RVLENGLKLAEATGANVEVVSLFAVLHDSRRINEVTDPEHGPRAAEFAAELRGSVFDLDDHELRLLYRACEGHTHERNHPDVTIQTCWDSDRLDLGRVGITPHPSRLCTEVAKRPETIKWADGRASFGVVPTFVLDEWGIDLEKER 438
            RVLENG +L+  TGANV VVSLFAVL DSRR+NE  DP HGPRAA FAA LRG VF+L D E RLL  AC+GHTHER HPDVT+QTCWDSDRL+LGRVGITPHPSRLCT  AKRP+TI WADGRA+FG+VP  V DEWGI+L + R
Sbjct:   31 RVLENGRRLSSETGANVAVVSLFAVLPDSRRVNEHHDPAHGPRAAVFAATLRGRVFELPDDEFRLLTVACDGHTHERTHPDVTVQTCWDSDRLNLGRVGITPHPSRLCTAAAKRPDTIAWADGRATFGIVPPLVRDEWGIELPQAR 176          
BLAST of mRNA_M-pyrifera_M_contig111930.2493.1 vs. uniprot
Match: L0DQM0_SINAD (Uncharacterized protein n=2 Tax=Singulisphaera TaxID=466152 RepID=L0DQM0_SINAD)

HSP 1 Score: 228 bits (582), Expect = 2.000e-74
Identity = 106/142 (74.65%), Postives = 118/142 (83.10%), Query Frame = 1
Query:    1 RVLENGLKLAEATGANVEVVSLFAVLHDSRRINEVTDPEHGPRAAEFAAELRGSVFDLDDHELRLLYRACEGHTHERNHPDVTIQTCWDSDRLDLGRVGITPHPSRLCTEVAKRPETIKWADGRASFGVVPTFVLDEWGIDL 426
            RVLENG +LA  TGA++EVVSLFAVLHDSRRINE TDP+HGPRAAEFA  LRG +FDL DHE +LL+RAC GHT+E  HPDVTIQTCWDSDRLDLGRVGITPHPSRLCT+ AKR +TI+WAD R     VP  V  EWGI+L
Sbjct:   31 RVLENGSRLARETGADIEVVSLFAVLHDSRRINEHTDPDHGPRAAEFARTLRGRLFDLSDHEFKLLHRACSGHTYELTHPDVTIQTCWDSDRLDLGRVGITPHPSRLCTKAAKRADTIQWADARGKMHFVPERVKSEWGINL 172          
BLAST of mRNA_M-pyrifera_M_contig111930.2493.1 vs. uniprot
Match: A0A517ZJ83_9PLAN (Uncharacterized protein n=2 Tax=Symmachiella dynata TaxID=2527995 RepID=A0A517ZJ83_9PLAN)

HSP 1 Score: 226 bits (576), Expect = 1.640e-73
Identity = 100/143 (69.93%), Postives = 120/143 (83.92%), Query Frame = 1
Query:    1 RVLENGLKLAEATGANVEVVSLFAVLHDSRRINEVTDPEHGPRAAEFAAELRGSVFDLDDHELRLLYRACEGHTHERNHPDVTIQTCWDSDRLDLGRVGITPHPSRLCTEVAKRPETIKWADGRASFGVVPTFVLDEWGIDLE 429
            RVLENGL+LAE TGAN+E+V LFAVLHDS+R ++  DPEHGPRAAEFA  L+  VF L DH+  LL++AC GHTHER HP++TIQTCWD+DRLD+GRVG+ PHPSRLCT+VAKRPETIKWA+GR + G VP FV D WGI+ +
Sbjct:   31 RVLENGLRLAETTGANIEIVKLFAVLHDSQRQSDGHDPEHGPRAAEFARTLQNDVFHLSDHDFALLHKACAGHTHERTHPNITIQTCWDADRLDIGRVGMQPHPSRLCTDVAKRPETIKWANGRGAMGYVPDFVQDVWGIESD 173          
BLAST of mRNA_M-pyrifera_M_contig111930.2493.1 vs. uniprot
Match: A0A2S8F3S4_9BACT (Uncharacterized protein n=2 Tax=Blastopirellula marina TaxID=124 RepID=A0A2S8F3S4_9BACT)

HSP 1 Score: 222 bits (565), Expect = 8.000e-72
Identity = 101/146 (69.18%), Postives = 119/146 (81.51%), Query Frame = 1
Query:    1 RVLENGLKLAEATGANVEVVSLFAVLHDSRRINEVTDPEHGPRAAEFAAELRGSVFDLDDHELRLLYRACEGHTHERNHPDVTIQTCWDSDRLDLGRVGITPHPSRLCTEVAKRPETIKWADGRASFGVVPTFVLDEWGIDLEKER 438
            RVLENG ++AEAT ANV+VVSLFAVLHDSRRI++  DPEHGPRAA+FA  +R     L D +  LLY+AC GHT    H D+T++TCWD+DRLDLGRVG+TPHPSRLCT+ AKRP TIKWADGRA+FGV+PT V DEWGIDL+  R
Sbjct:   29 RVLENGRRIAEATDANVDVVSLFAVLHDSRRIDDGYDPEHGPRAADFARRIRKRYIHLPDDQFELLYQACAGHTTGLTHDDITVRTCWDADRLDLGRVGVTPHPSRLCTDFAKRPATIKWADGRAAFGVIPTMVEDEWGIDLQPWR 174          
BLAST of mRNA_M-pyrifera_M_contig111930.2493.1 vs. uniprot
Match: A0A142X2Y7_9PLAN (Uncharacterized protein n=1 Tax=Planctomyces sp. SH-PL14 TaxID=1632864 RepID=A0A142X2Y7_9PLAN)

HSP 1 Score: 218 bits (556), Expect = 3.070e-70
Identity = 100/143 (69.93%), Postives = 115/143 (80.42%), Query Frame = 1
Query:    1 RVLENGLKLAEATGANVEVVSLFAVLHDSRRINEVTDPEHGPRAAEFAAELRGSVFDLDDHELRLLYRACEGHTHERNHPDVTIQTCWDSDRLDLGRVGITPHPSRLCTEVAKRPETIKWADGRASFGVVPTFVLDEWGIDLE 429
            RVLENG +LA  TGA + VV LFAV HD+RR+NE  DP+HGPR A+ A +LRGS+F+L++   RLL RACEGHTHE  HPDVTIQTCWD+DRLDLGRVGI PHPSRLCTE A+RPET KWADGRA F  +P FVL  W IDL+
Sbjct:   31 RVLENGRRLAGETGAEIAVVELFAVFHDARRVNEGYDPDHGPRGAKLATKLRGSLFELEEGAFRLLCRACEGHTHELTHPDVTIQTCWDADRLDLGRVGIEPHPSRLCTEAARRPETRKWADGRACFQFLPDFVLTAWDIDLQ 173          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111930.2493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A518IT52_9BACT5.170e-9793.06Uncharacterized protein n=2 Tax=Rosistilla oblonga... [more]
A0A517MNS4_9BACT6.270e-8884.25Uncharacterized protein n=2 Tax=Roseimaritima mult... [more]
X0VX86_9ZZZZ1.090e-7878.01HD domain-containing protein n=1 Tax=marine sedime... [more]
A0A1U7CV41_9BACT6.940e-7876.03Uncharacterized protein n=2 Tax=Paludisphaera bore... [more]
A0A5M6D5V2_9BACT2.550e-7775.35Uncharacterized protein n=1 Tax=Roseiconus nitrati... [more]
A0A7C2K1B2_9PLAN3.400e-7674.66Uncharacterized protein n=1 Tax=Schlesneria paludi... [more]
L0DQM0_SINAD2.000e-7474.65Uncharacterized protein n=2 Tax=Singulisphaera Tax... [more]
A0A517ZJ83_9PLAN1.640e-7369.93Uncharacterized protein n=2 Tax=Symmachiella dynat... [more]
A0A2S8F3S4_9BACT8.000e-7269.18Uncharacterized protein n=2 Tax=Blastopirellula ma... [more]
A0A142X2Y7_9PLAN3.070e-7069.93Uncharacterized protein n=1 Tax=Planctomyces sp. S... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111930contigM-pyrifera_M_contig111930:140..586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score228.8
Seed ortholog evalue1.7e-57
Seed eggNOG ortholog886293.Sinac_7181
KEGG koko:K06950
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mRNA catabolic process
EggNOG OGs2IZZA@203682,COG1418@1,COG1418@2
COG Functional cat.S
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size447
Cds size447
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.686131-CDS-M-pyrifera_M_contig111930:139..5861622815632.686131-CDS-M-pyrifera_M_contig111930:139..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111930 140..586 -
1692277496.8034315-CDS-M-pyrifera_M_contig111930:139..5861692277496.8034315-CDS-M-pyrifera_M_contig111930:139..586Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111930 140..586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111930.2493.1prot_M-pyrifera_M_contig111930.2493.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111930 140..586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111930.2493.1

>prot_M-pyrifera_M_contig111930.2493.1 ID=prot_M-pyrifera_M_contig111930.2493.1|Name=mRNA_M-pyrifera_M_contig111930.2493.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=149bp
RVLENGLKLAEATGANVEVVSLFAVLHDSRRINEVTDPEHGPRAAEFAAE
LRGSVFDLDDHELRLLYRACEGHTHERNHPDVTIQTCWDSDRLDLGRVGI
TPHPSRLCTEVAKRPETIKWADGRASFGVVPTFVLDEWGIDLEKERGW*
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mRNA from alignment at M-pyrifera_M_contig111930:140..586-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111930.2493.1 ID=mRNA_M-pyrifera_M_contig111930.2493.1|Name=mRNA_M-pyrifera_M_contig111930.2493.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=447bp|location=Sequence derived from alignment at M-pyrifera_M_contig111930:140..586- (Macrocystis pyrifera P11B4 male)
AGAGTTCTCGAAAATGGGCTGAAACTGGCGGAAGCAACGGGAGCTAATGT CGAAGTCGTCTCCCTGTTTGCAGTCCTTCACGATTCACGACGAATCAACG AAGTCACCGACCCAGAACATGGGCCACGGGCTGCTGAGTTTGCAGCCGAA CTTCGTGGTAGCGTTTTCGATCTGGACGACCACGAGTTACGGTTGCTGTA TCGAGCCTGCGAAGGCCACACGCACGAACGGAATCATCCTGACGTGACGA TCCAGACTTGCTGGGACTCGGATCGCCTCGATCTGGGCCGAGTTGGGATC ACTCCGCATCCCAGTCGCCTTTGCACCGAAGTTGCCAAACGCCCCGAGAC AATCAAATGGGCTGATGGTCGGGCCAGCTTCGGCGTCGTTCCAACTTTTG TATTGGACGAGTGGGGGATTGATCTGGAGAAGGAACGGGGATGGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111930:140..586-

>mRNA_M-pyrifera_M_contig111930.2493.1 ID=mRNA_M-pyrifera_M_contig111930.2493.1|Name=mRNA_M-pyrifera_M_contig111930.2493.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=894bp|location=Sequence derived from alignment at M-pyrifera_M_contig111930:140..586- (Macrocystis pyrifera P11B4 male)
AGAGTTCTCGAAAATGGGCTGAAACTGGCGGAAGCAACGGGAGCTAATGT
CGAAGTCGTCTCCCTGTTTGCAGTCCTTCACGATTCACGACGAATCAACG
AAGTCACCGACCCAGAACATGGGCCACGGGCTGCTGAGTTTGCAGCCGAA
CTTCGTGGTAGCGTTTTCGATCTGGACGACCACGAGTTACGGTTGCTGTA
TCGAGCCTGCGAAGGCCACACGCACGAACGGAATCATCCTGACGTGACGA
TCCAGACTTGCTGGGACTCGGATCGCCTCGATCTGGGCCGAGTTGGGATC
ACTCCGCATCCCAGTCGCCTTTGCACCGAAGTTGCCAAACGCCCCGAGAC
AATCAAATGGGCTGATGGTCGGGCCAGCTTCGGCGTCGTTCCAACTTTTG
TATTGGACGAGTGGGGGATTGATCTGGAGAAGGAACGGGGATGGTGAAGA
GTTCTCGAAAATGGGCTGAAACTGGCGGAAGCAACGGGAGCTAATGTCGA
AGTCGTCTCCCTGTTTGCAGTCCTTCACGATTCACGACGAATCAACGAAG
TCACCGACCCAGAACATGGGCCACGGGCTGCTGAGTTTGCAGCCGAACTT
CGTGGTAGCGTTTTCGATCTGGACGACCACGAGTTACGGTTGCTGTATCG
AGCCTGCGAAGGCCACACGCACGAACGGAATCATCCTGACGTGACGATCC
AGACTTGCTGGGACTCGGATCGCCTCGATCTGGGCCGAGTTGGGATCACT
CCGCATCCCAGTCGCCTTTGCACCGAAGTTGCCAAACGCCCCGAGACAAT
CAAATGGGCTGATGGTCGGGCCAGCTTCGGCGTCGTTCCAACTTTTGTAT
TGGACGAGTGGGGGATTGATCTGGAGAAGGAACGGGGATGGTGA
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