mRNA_M-pyrifera_M_contig111922.2492.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111922.2492.1
Unique NamemRNA_M-pyrifera_M_contig111922.2492.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111922.2492.1 vs. uniprot
Match: A0A2D4XJ06_9FLAO (Uncharacterized protein n=3 Tax=Aequorivita TaxID=153265 RepID=A0A2D4XJ06_9FLAO)

HSP 1 Score: 139 bits (349), Expect = 2.150e-35
Identity = 77/139 (55.40%), Postives = 98/139 (70.50%), Query Frame = 1
Query:    1 ASLTGPTLSGRPSGTCFNDGESVS-FSVSDSAGQTASCSWTYDLFDNESPSIDGTLSSTPCPGNIVRSTDPSACSAVVVYTTPVGTDNCPGVTTSRTAGLASGSTFPTGSTTQTFVATDAQGSTSSCSFSVTVNDVEAP 414
            A+LT    +G PSG+ F  G + + F V+DS+G TA+CS+   + D E+P+I        CPGNI++S DP  C AV+ YT PVGTDNCPG TT +TAGLASG TFP G+TT TFV TDA G+T++CSF VT+ND EAP
Sbjct: 1075 AALTPTQTAGLPSGSTFPIGTTTNTFIVTDSSGNTATCSFDVTVNDTEAPAI-------TCPGNIIQSNDPGVCGAVITYTAPVGTDNCPGSTTVQTAGLASGETFPIGTTTNTFVVTDASGNTATCSFDVTINDNEAP 1206          
BLAST of mRNA_M-pyrifera_M_contig111922.2492.1 vs. uniprot
Match: UPI001F45A165 (HYR domain-containing protein n=2 Tax=Flavobacteriaceae TaxID=49546 RepID=UPI001F45A165)

HSP 1 Score: 132 bits (331), Expect = 5.250e-33
Identity = 76/139 (54.68%), Postives = 94/139 (67.63%), Query Frame = 1
Query:    1 ASLTGPTLSGRPSGTCFNDGESVS-FSVSDSAGQTASCSWTYDLFDNESPSIDGTLSSTPCPGNIVRSTDPSACSAVVVYTTPVGTDNCPGVTTSRTAGLASGSTFPTGSTTQTFVATDAQGSTSSCSFSVTVNDVEAP 414
            A+LT    +G PSG+ F  G + + F V+DS+G TA+CS+   + D E+P I        CPGNI +  DP  C AV+ Y TPVGTDNC G TT +TAGLASGSTFP G+TT TFV TDA G+T+ CSF VT+ND EAP
Sbjct:   14 AALTPTQTAGLPSGSTFPIGTTTNTFVVTDSSGNTATCSFDVIVNDTEAPEI-------TCPGNITQGNDPGICGAVITYITPVGTDNCSGSTTIQTAGLASGSTFPVGTTTNTFVVTDASGNTAICSFDVTINDNEAP 145          
BLAST of mRNA_M-pyrifera_M_contig111922.2492.1 vs. uniprot
Match: UPI00147980F2 (HYR domain-containing protein n=1 Tax=Aequorivita antarctica TaxID=153266 RepID=UPI00147980F2)

HSP 1 Score: 128 bits (322), Expect = 4.970e-32
Identity = 72/130 (55.38%), Postives = 89/130 (68.46%), Query Frame = 1
Query:   28 GRPSGTCFNDGESVS-FSVSDSAGQTASCSWTYDLFDNESPSIDGTLSSTPCPGNIVRSTDPSACSAVVVYTTPVGTDNCPGVTTSRTAGLASGSTFPTGSTTQTFVATDAQGSTSSCSFSVTVNDVEAP 414
            G PSG+ F  G + + F V+D++G TA+CS+   + D E P I        CPGNI +  D   C AV+ YT PVGTDNCPG TT++TAGLASGSTFP G+TT TFV TDA G+T+SCSF V +ND EAP
Sbjct:  336 GLPSGSTFPVGTTTNTFVVTDASGNTATCSFDVTVNDTEVPEI-------TCPGNITQDNDAGICGAVITYTAPVGTDNCPGSTTAQTAGLASGSTFPVGTTTNTFVTTDASGNTASCSFDVIINDNEAP 458          
BLAST of mRNA_M-pyrifera_M_contig111922.2492.1 vs. uniprot
Match: UPI000ABE0A95 (M36 family metallopeptidase n=1 Tax=Aequorivita soesokkakensis TaxID=1385699 RepID=UPI000ABE0A95)

HSP 1 Score: 128 bits (322), Expect = 9.410e-32
Identity = 72/130 (55.38%), Postives = 89/130 (68.46%), Query Frame = 1
Query:   28 GRPSGTCFNDGESVS-FSVSDSAGQTASCSWTYDLFDNESPSIDGTLSSTPCPGNIVRSTDPSACSAVVVYTTPVGTDNCPGVTTSRTAGLASGSTFPTGSTTQTFVATDAQGSTSSCSFSVTVNDVEAP 414
            G PSG+ F  G + + F V+D AG TA+CS+   + D E+P+I        CPGNI +  DP  C AV+ YT PVGTDNC G TT +TAGLASGSTFP G+TT TFV TDA G+T++CSF V +ND EAP
Sbjct: 1612 GLPSGSTFPVGTTTNTFVVTDGAGNTATCSFDVTVNDTEAPAI-------TCPGNITQDNDPGICGAVITYTAPVGTDNCSGSTTVQTAGLASGSTFPVGTTTNTFVVTDASGNTATCSFDVIINDNEAP 1734          
BLAST of mRNA_M-pyrifera_M_contig111922.2492.1 vs. uniprot
Match: A0A2S0HUM6_9FLAO (Uncharacterized protein n=1 Tax=Pukyongia salina TaxID=2094025 RepID=A0A2S0HUM6_9FLAO)

HSP 1 Score: 124 bits (312), Expect = 2.090e-30
Identity = 73/139 (52.52%), Postives = 90/139 (64.75%), Query Frame = 1
Query:    1 ASLTGPTLSGRPSGTCFNDGES-VSFSVSDSAGQTASCSWTYDLFDNESPSIDGTLSSTPCPGNIVRSTDPSACSAVVVYTTPVGTDNCPGVTTSRTAGLASGSTFPTGSTTQTFVATDAQGSTSSCSFSVTVNDVEAP 414
            A +T    SG  SG+ F  G + V+F+ +D+AG TA CS+   + D E P I        CP +I+ S DP  C AVV YT PVGTDNCPG TT +TAGL SGS+FP G+TT TFV TDA G+T++CSF V VND E P
Sbjct: 1481 AGVTVTQTSGLASGSTFPVGTTAVTFTATDAAGNTAMCSFNVTVNDTEDPVI-------TCPTDIIVSNDPGVCEAVVTYTAPVGTDNCPGATTMQTAGLPSGSSFPVGTTTNTFVVTDASGNTATCSFDVIVNDTEDP 1612          
BLAST of mRNA_M-pyrifera_M_contig111922.2492.1 vs. uniprot
Match: A0A5C6YZS6_9FLAO (HYR domain-containing protein n=2 Tax=Aequorivita antarctica TaxID=153266 RepID=A0A5C6YZS6_9FLAO)

HSP 1 Score: 124 bits (311), Expect = 2.800e-30
Identity = 70/128 (54.69%), Postives = 87/128 (67.97%), Query Frame = 1
Query:   34 PSGTCFNDGESVS-FSVSDSAGQTASCSWTYDLFDNESPSIDGTLSSTPCPGNIVRSTDPSACSAVVVYTTPVGTDNCPGVTTSRTAGLASGSTFPTGSTTQTFVATDAQGSTSSCSFSVTVNDVEAP 414
            PSG+ F  G + + F V+DSAG TA+CS+   + D E+P I        CPGNI +  D   C AV+ YT PVGTDNC G TT++TAGLASG TFP G+TT TFV TDA G++S+CSF V +ND EAP
Sbjct:  770 PSGSTFPVGTTTNTFVVTDSAGNTATCSFDVTVNDTEAPEI-------TCPGNITQDNDLGICGAVITYTAPVGTDNCSGATTTQTAGLASGETFPVGTTTNTFVVTDASGNSSTCSFDVIINDNEAP 890          
BLAST of mRNA_M-pyrifera_M_contig111922.2492.1 vs. uniprot
Match: UPI00041FB8BB (HYR domain-containing protein n=1 Tax=Gillisia sp. JM1 TaxID=1283286 RepID=UPI00041FB8BB)

HSP 1 Score: 123 bits (308), Expect = 7.010e-30
Identity = 70/130 (53.85%), Postives = 89/130 (68.46%), Query Frame = 1
Query:   28 GRPSGTCFNDGESVS-FSVSDSAGQTASCSWTYDLFDNESPSIDGTLSSTPCPGNIVRSTDPSACSAVVVYTTPVGTDNCPGVTTSRTAGLASGSTFPTGSTTQTFVATDAQGSTSSCSFSVTVNDVEAP 414
            G  SG+ F  G + + F+V+D++G   SCS+T  + D E+P+I        CP  I +S D   C AVV YT PVGTDNC G TT++TAGLASGSTFP G+TT TF  TDA G+++SCSF+VTVND EAP
Sbjct:  443 GLASGSTFPVGTTTNTFTVTDASGNATSCSFTVTVNDTEAPAI-------TCPAPITQSNDAGVCGAVVTYTAPVGTDNCSGSTTTQTAGLASGSTFPVGTTTNTFTVTDASGNSTSCSFTVTVNDTEAP 565          
BLAST of mRNA_M-pyrifera_M_contig111922.2492.1 vs. uniprot
Match: A0A7G8PSI1_9FLAO (HYR domain-containing protein n=2 Tax=Constantimarinum furrinae TaxID=2562285 RepID=A0A7G8PSI1_9FLAO)

HSP 1 Score: 123 bits (308), Expect = 7.250e-30
Identity = 71/130 (54.62%), Postives = 87/130 (66.92%), Query Frame = 1
Query:   28 GRPSGTCFNDGESVS-FSVSDSAGQTASCSWTYDLFDNESPSIDGTLSSTPCPGNIVRSTDPSACSAVVVYTTPVGTDNCPGVTTSRTAGLASGSTFPTGSTTQTFVATDAQGSTSSCSFSVTVNDVEAP 414
            G PSG+ F  G + + F V+D++G TA+CS+   + D E P I        CPGNI  + DP  CSAVV Y TPVGTDNC G TT +TAGL SGS FP G+TT TFV TD+ G+T++CSF VTVND E P
Sbjct: 1745 GLPSGSTFPVGTTTNTFEVTDASGNTATCSFDVIVNDTEDPVI-------TCPGNITVNNDPGLCSAVVTYATPVGTDNCSGSTTMQTAGLPSGSAFPVGTTTNTFVVTDSSGNTATCSFDVTVNDNEPP 1867          
BLAST of mRNA_M-pyrifera_M_contig111922.2492.1 vs. uniprot
Match: A0A2V8LPI6_9BACT (Uncharacterized protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V8LPI6_9BACT)

HSP 1 Score: 122 bits (306), Expect = 1.280e-29
Identity = 65/116 (56.03%), Postives = 82/116 (70.69%), Query Frame = 1
Query:   67 VSFSVSDSAGQTASCSWTYDLFDNESPSIDGTLSSTPCPGNIVRSTDPSACSAVVVYTTPVGTDNCPGVTTSRTAGLASGSTFPTGSTTQTFVATDAQGSTSSCSFSVTVNDVEAP 414
            ++++ +DSAG  +SC+ T  + D E+P+I        CP NI R  DP  C AVVVY TPVG+DNCPG TT +TAGL SGSTFP G+TT TF  TD+ G+ +SCSF+VTVNDVE P
Sbjct:  714 ITWTATDSAGNHSSCTQTVTVNDTENPTIS-------CPANITRDNDPGICGAVVVYPTPVGSDNCPGATTEQTAGLPSGSTFPVGTTTNTFKVTDSSGNMTSCSFTVTVNDVENP 822          
BLAST of mRNA_M-pyrifera_M_contig111922.2492.1 vs. uniprot
Match: UPI001C8D068E (HYR domain-containing protein n=1 Tax=Crocinitomix sp. GM2_3_6_6 TaxID=2862509 RepID=UPI001C8D068E)

HSP 1 Score: 120 bits (301), Expect = 6.380e-29
Identity = 68/130 (52.31%), Postives = 88/130 (67.69%), Query Frame = 1
Query:   28 GRPSGTCFNDGES-VSFSVSDSAGQTASCSWTYDLFDNESPSIDGTLSSTPCPGNIVRSTDPSACSAVVVYTTPVGTDNCPGVTTSRTAGLASGSTFPTGSTTQTFVATDAQGSTSSCSFSVTVNDVEAP 414
            G+ +GT F  G + VS+ V D++G TA+CS+   + DNESP +        CP NI  ++DP  C A V YT PVGTDNCPGVTT+ TAG ASG+ FP G+T  T+ ATDA G+ ++CSF+VTVND E P
Sbjct:  588 GQATGTLFPIGTTTVSYQVIDASGNTANCSFDVTVSDNESPVL-------TCPTNITVNSDPGVCGATVTYTAPVGTDNCPGVTTTMTAGQASGTVFPIGTTVVTYQATDASGNVTTCSFNVTVNDAELP 710          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111922.2492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D4XJ06_9FLAO2.150e-3555.40Uncharacterized protein n=3 Tax=Aequorivita TaxID=... [more]
UPI001F45A1655.250e-3354.68HYR domain-containing protein n=2 Tax=Flavobacteri... [more]
UPI00147980F24.970e-3255.38HYR domain-containing protein n=1 Tax=Aequorivita ... [more]
UPI000ABE0A959.410e-3255.38M36 family metallopeptidase n=1 Tax=Aequorivita so... [more]
A0A2S0HUM6_9FLAO2.090e-3052.52Uncharacterized protein n=1 Tax=Pukyongia salina T... [more]
A0A5C6YZS6_9FLAO2.800e-3054.69HYR domain-containing protein n=2 Tax=Aequorivita ... [more]
UPI00041FB8BB7.010e-3053.85HYR domain-containing protein n=1 Tax=Gillisia sp.... [more]
A0A7G8PSI1_9FLAO7.250e-3054.62HYR domain-containing protein n=2 Tax=Constantimar... [more]
A0A2V8LPI6_9BACT1.280e-2956.03Uncharacterized protein n=1 Tax=Acidobacteria bact... [more]
UPI001C8D068E6.380e-2952.31HYR domain-containing protein n=1 Tax=Crocinitomix... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111922contigM-pyrifera_M_contig111922:49..462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score107.1
Seed ortholog evalue6.8e-21
Seed eggNOG ortholog865937.Gilli_0558
Hectar predicted targeting categoryother localisation
EggNOG free text desc.C-terminal domain of CHU protein family
EggNOG OGs1HWKJ@117743,2P5SV@244698,4PKD0@976,COG1520@1,COG1520@2,COG2304@1,COG2304@2,COG3391@1,COG3391@2
COG Functional cat.U
Best tax levelGillisia
Best eggNOG OGNA|NA|NA
Exons1
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.6473446-CDS-M-pyrifera_M_contig111922:48..4621622815632.6473446-CDS-M-pyrifera_M_contig111922:48..462Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111922 49..462 -
1692277496.7891324-CDS-M-pyrifera_M_contig111922:48..4621692277496.7891324-CDS-M-pyrifera_M_contig111922:48..462Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111922 49..462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111922.2492.1prot_M-pyrifera_M_contig111922.2492.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111922 49..462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111922.2492.1

>prot_M-pyrifera_M_contig111922.2492.1 ID=prot_M-pyrifera_M_contig111922.2492.1|Name=mRNA_M-pyrifera_M_contig111922.2492.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=138bp
ASLTGPTLSGRPSGTCFNDGESVSFSVSDSAGQTASCSWTYDLFDNESPS
IDGTLSSTPCPGNIVRSTDPSACSAVVVYTTPVGTDNCPGVTTSRTAGLA
SGSTFPTGSTTQTFVATDAQGSTSSCSFSVTVNDVEAP
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mRNA from alignment at M-pyrifera_M_contig111922:49..462-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111922.2492.1 ID=mRNA_M-pyrifera_M_contig111922.2492.1|Name=mRNA_M-pyrifera_M_contig111922.2492.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=414bp|location=Sequence derived from alignment at M-pyrifera_M_contig111922:49..462- (Macrocystis pyrifera P11B4 male)
GCTTCTCTCACGGGCCCTACCCTCAGCGGGAGACCAAGTGGCACCTGCTT CAACGACGGCGAGTCCGTCTCTTTCTCTGTCAGTGACAGCGCTGGTCAGA CAGCTAGCTGTTCATGGACCTACGACCTGTTTGACAACGAGTCGCCTAGC ATCGACGGCACTCTTTCTTCCACACCCTGCCCCGGCAACATTGTGCGAAG CACAGACCCGAGTGCTTGTTCTGCAGTTGTTGTTTATACGACTCCAGTTG GGACTGACAACTGCCCTGGTGTCACGACCAGCAGAACAGCTGGGCTAGCG AGCGGCTCGACCTTTCCCACGGGTTCCACGACGCAGACTTTCGTGGCGAC TGACGCCCAAGGCTCGACATCTTCGTGCTCCTTTTCTGTCACAGTGAACG ATGTTGAGGCACCT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111922:49..462-

>mRNA_M-pyrifera_M_contig111922.2492.1 ID=mRNA_M-pyrifera_M_contig111922.2492.1|Name=mRNA_M-pyrifera_M_contig111922.2492.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=828bp|location=Sequence derived from alignment at M-pyrifera_M_contig111922:49..462- (Macrocystis pyrifera P11B4 male)
GCTTCTCTCACGGGCCCTACCCTCAGCGGGAGACCAAGTGGCACCTGCTT
CAACGACGGCGAGTCCGTCTCTTTCTCTGTCAGTGACAGCGCTGGTCAGA
CAGCTAGCTGTTCATGGACCTACGACCTGTTTGACAACGAGTCGCCTAGC
ATCGACGGCACTCTTTCTTCCACACCCTGCCCCGGCAACATTGTGCGAAG
CACAGACCCGAGTGCTTGTTCTGCAGTTGTTGTTTATACGACTCCAGTTG
GGACTGACAACTGCCCTGGTGTCACGACCAGCAGAACAGCTGGGCTAGCG
AGCGGCTCGACCTTTCCCACGGGTTCCACGACGCAGACTTTCGTGGCGAC
TGACGCCCAAGGCTCGACATCTTCGTGCTCCTTTTCTGTCACAGTGAACG
ATGTTGAGGCACCTGCTTCTCTCACGGGCCCTACCCTCAGCGGGAGACCA
AGTGGCACCTGCTTCAACGACGGCGAGTCCGTCTCTTTCTCTGTCAGTGA
CAGCGCTGGTCAGACAGCTAGCTGTTCATGGACCTACGACCTGTTTGACA
ACGAGTCGCCTAGCATCGACGGCACTCTTTCTTCCACACCCTGCCCCGGC
AACATTGTGCGAAGCACAGACCCGAGTGCTTGTTCTGCAGTTGTTGTTTA
TACGACTCCAGTTGGGACTGACAACTGCCCTGGTGTCACGACCAGCAGAA
CAGCTGGGCTAGCGAGCGGCTCGACCTTTCCCACGGGTTCCACGACGCAG
ACTTTCGTGGCGACTGACGCCCAAGGCTCGACATCTTCGTGCTCCTTTTC
TGTCACAGTGAACGATGTTGAGGCACCT
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