mRNA_M-pyrifera_M_contig11192.2490.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11192.2490.1
Unique NamemRNA_M-pyrifera_M_contig11192.2490.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11192.2490.1 vs. uniprot
Match: D7FS43_ECTSI (Putative: flagellar radial spoke protein 4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS43_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 8.920e-35
Identity = 63/72 (87.50%), Postives = 65/72 (90.28%), Query Frame = 1
Query:    1 WPGAISVAFGKRFTNVYSGDGVKFGAEGPFQPPPPPMLQSEWAPGEDEEGLAEQADVLVDPNPPEGEGDEDE 216
            WPGAI+VAFGKRFTNVYSGDGVKFG EGPFQP  PPMLQ EW PGEDEEGL EQADVLVDPNPPEGE +EDE
Sbjct:  367 WPGAIAVAFGKRFTNVYSGDGVKFGGEGPFQPSLPPMLQPEWTPGEDEEGLVEQADVLVDPNPPEGEEEEDE 438          
BLAST of mRNA_M-pyrifera_M_contig11192.2490.1 vs. uniprot
Match: A0A7S2XZR7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZR7_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.680e-17
Identity = 44/71 (61.97%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 WPGAISVAFGKRFTNVYSGDGVKFGAEGPFQPPPPPMLQSEWAPGEDEEGLAEQADVLVDPNPPEGEGDED 213
            WPGA+++AFGKRFTN+Y G G+KF     + PP P  LQ EW P ED+E L E  DVLVDPNPPE E DED
Sbjct:  377 WPGAVAIAFGKRFTNIYVGYGLKFSPTS-YTPPMPLPLQKEWEPEEDDEPLLESEDVLVDPNPPEEE-DED 445          
BLAST of mRNA_M-pyrifera_M_contig11192.2490.1 vs. uniprot
Match: A0A8K1CG11_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG11_PYTOL)

HSP 1 Score: 64.7 bits (156), Expect = 1.810e-10
Identity = 44/83 (53.01%), Postives = 50/83 (60.24%), Query Frame = 1
Query:    1 WPGAISVAFGKRFTNVYSGDGVKFGAEGPFQPPPPPMLQ-------SEWAPGEDE---------EGLAEQADVLVDPNPPEGE 201
            WPGA+S+A GK+F NVY G GVKF AE P+Q P P  LQ       SE A GE+          EGL+EQ DVL DP PPE E
Sbjct:  365 WPGAVSIAVGKKFLNVYVGHGVKFSAE-PYQRPLPETLQVGYGIAFSEDA-GEEGADAKALLRFEGLSEQKDVLEDPTPPEEE 445          
BLAST of mRNA_M-pyrifera_M_contig11192.2490.1 vs. uniprot
Match: A0A662WVF1_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WVF1_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 4.190e-9
Identity = 38/80 (47.50%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    1 WPGAISVAFGKRFTNVYSGDGVKFGAEGPFQPPPPPMLQ--------SEWAPGEDEEGL-----AEQADVLVDPNPPEGE 201
            WPGA+S+A GK+F NVY G G+KF   GPFQ  PP  LQ         + + GE +  L     AEQ D+L DP+PPE E
Sbjct:  489 WPGAVSIAVGKKFLNVYVGHGIKF-LPGPFQLSPPQRLQPGSGVGLSEDLSEGESKPTLRCEIPAEQPDLLEDPSPPEEE 567          
BLAST of mRNA_M-pyrifera_M_contig11192.2490.1 vs. uniprot
Match: A0A3F2S087_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S087_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 5.650e-9
Identity = 40/85 (47.06%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    1 WPGAISVAFGKRFTNVYSGDGVKFGAEGPFQPPPPPMLQS--------EWAPGEDEEGL-----AEQADVLVDPNPPEGEGDEDE 216
            WPGA+S+A GK+F N+Y G GVKF +E  FQ PPP  LQS        + A GE +  L      EQ D+L DP+PP   G+E+E
Sbjct:  368 WPGAVSIAVGKKFLNIYVGHGVKFLSES-FQLPPPQRLQSGSGVGLSEDSADGESKPTLRCEIPVEQPDLLEDPSPP---GEEEE 448          
BLAST of mRNA_M-pyrifera_M_contig11192.2490.1 vs. uniprot
Match: A0A2P4XL78_9STRA (Flagellar radial spoke protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A2P4XL78_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.060e-8
Identity = 37/77 (48.05%), Postives = 46/77 (59.74%), Query Frame = 1
Query:    1 WPGAISVAFGKRFTNVYSGDGVKFGAEGPFQPPPPPMLQ--------SEWAPGEDEEGL-----AEQADVLVDPNPP 192
            WPGA+S+A GK+F NVY G GVK+ +E PFQ PPP  LQ         + A GE +  L      EQ D+L DP+PP
Sbjct:  368 WPGAVSIAVGKKFLNVYVGHGVKYLSE-PFQLPPPQRLQVGSGVSTSEDSADGEGKPTLRCEIPVEQPDLLEDPSPP 443          
BLAST of mRNA_M-pyrifera_M_contig11192.2490.1 vs. uniprot
Match: A0A0P1AK23_PLAHL (Radial spokehead-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AK23_PLAHL)

HSP 1 Score: 57.8 bits (138), Expect = 5.040e-8
Identity = 37/82 (45.12%), Postives = 49/82 (59.76%), Query Frame = 1
Query:    1 WPGAISVAFGKRFTNVYSGDGVKFGAEGPFQPPPPPMLQS--------EWAPGEDEEGLA-----EQADVLVDPNPPEGEGD 207
            WPGA+S+A GK+F N+Y G GVKF AE P+Q P P  LQ+        E +  +D+  L+     EQ D+L DP+PP  E D
Sbjct:  364 WPGAVSIAVGKKFCNIYVGHGVKFRAE-PYQLPLPQQLQTGSGVSWSEETSDVDDKPTLSCVLPVEQPDLLEDPSPPTDEED 444          
BLAST of mRNA_M-pyrifera_M_contig11192.2490.1 vs. uniprot
Match: H3GLW4_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GLW4_PHYRM)

HSP 1 Score: 57.8 bits (138), Expect = 5.040e-8
Identity = 36/76 (47.37%), Postives = 44/76 (57.89%), Query Frame = 1
Query:    1 WPGAISVAFGKRFTNVYSGDGVKFGAEGPFQPPPPPMLQ--------SEWAPGEDEEGL-----AEQADVLVDPNP 189
            WPGA+S+A GK+F NVY G+GVKF +E PFQ PPP  LQ         +   GE +  L      EQ D+L DP P
Sbjct:  368 WPGAVSIAVGKKFLNVYVGNGVKFLSE-PFQLPPPQRLQPGSGVGLSEDAGDGESKPALHCEVPVEQPDLLEDPAP 442          
BLAST of mRNA_M-pyrifera_M_contig11192.2490.1 vs. uniprot
Match: A0A8J5J9A3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J9A3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 9.670e-8
Identity = 35/77 (45.45%), Postives = 42/77 (54.55%), Query Frame = 1
Query:    1 WPGAISVAFGKRFTNVYSGDGVKFGAEGPFQPPPPPMLQSEWAPGEDEEGL-------------AEQADVLVDPNPP 192
            WPGA+S+A GK+F NVY G GVKF +E PFQ  PP  LQ     G  E+                EQ D+L DP+PP
Sbjct:  745 WPGAVSIAVGKKFLNVYVGHGVKFLSE-PFQLAPPQRLQVGSCVGMSEDNAEGDGKPTLRCEIPVEQPDLLEDPSPP 820          
BLAST of mRNA_M-pyrifera_M_contig11192.2490.1 vs. uniprot
Match: A0A5D6XUV5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUV5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.500e-7
Identity = 34/86 (39.53%), Postives = 45/86 (52.33%), Query Frame = 1
Query:    1 WPGAISVAFGKRFTNVYSGDGVKFGAEGPFQPPPPPMLQSEWA-----------------PGEDEEGLAEQADVLVDPNPPEGEGD 207
            WPGA+ +A GK+F NVY G+G KF  E P+Q  PP  +Q+ +                  P    + L EQ D+L DP PPE EG+
Sbjct:  353 WPGAVGIAVGKKFLNVYVGNGAKFSPE-PYQLQPPLPVQAGYXXXXXXXXXXXXXDAGPRPVLRFDALVEQKDLLEDPTPPEDEGE 437          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11192.2490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FS43_ECTSI8.920e-3587.50Putative: flagellar radial spoke protein 4 n=2 Tax... [more]
A0A7S2XZR7_9STRA2.680e-1761.97Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A8K1CG11_PYTOL1.810e-1053.01Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A662WVF1_9STRA4.190e-947.50Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A3F2S087_9STRA5.650e-947.06Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A2P4XL78_9STRA1.060e-848.05Flagellar radial spoke protein n=10 Tax=Phytophtho... [more]
A0A0P1AK23_PLAHL5.040e-845.12Radial spokehead-like protein n=1 Tax=Plasmopara h... [more]
H3GLW4_PHYRM5.040e-847.37Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A8J5J9A3_9STRA9.670e-845.45Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A5D6XUV5_9STRA4.500e-739.53Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11192contigM-pyrifera_M_contig11192:304..522 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue4.7e-29
Seed eggNOG ortholog2880.D7FS43
Preferred nameRSPH4A
KEGG koko:K19756
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001534,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0031514,GO:0031974,GO:0031981,GO:0032838,GO:0032991,GO:0035082,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0060271,GO:0070013,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.microtubule-based process
EggNOG OGs28KDA@1,2QSU4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.6093845-CDS-M-pyrifera_M_contig11192:303..5221622815632.6093845-CDS-M-pyrifera_M_contig11192:303..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11192 304..522 +
1692277496.768413-CDS-M-pyrifera_M_contig11192:303..5221692277496.768413-CDS-M-pyrifera_M_contig11192:303..522Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11192 304..522 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11192.2490.1prot_M-pyrifera_M_contig11192.2490.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11192 304..522 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11192.2490.1

>prot_M-pyrifera_M_contig11192.2490.1 ID=prot_M-pyrifera_M_contig11192.2490.1|Name=mRNA_M-pyrifera_M_contig11192.2490.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=73bp
WPGAISVAFGKRFTNVYSGDGVKFGAEGPFQPPPPPMLQSEWAPGEDEEG
LAEQADVLVDPNPPEGEGDEDE*
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mRNA from alignment at M-pyrifera_M_contig11192:304..522+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11192.2490.1 ID=mRNA_M-pyrifera_M_contig11192.2490.1|Name=mRNA_M-pyrifera_M_contig11192.2490.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=219bp|location=Sequence derived from alignment at M-pyrifera_M_contig11192:304..522+ (Macrocystis pyrifera P11B4 male)
TGGCCCGGAGCCATTTCCGTCGCTTTCGGCAAGCGCTTCACCAACGTATA CTCGGGGGACGGCGTCAAGTTCGGAGCGGAGGGCCCGTTCCAGCCCCCGC CGCCGCCGATGCTGCAGTCCGAGTGGGCTCCGGGGGAGGACGAGGAGGGG CTCGCGGAGCAAGCGGACGTGCTGGTCGATCCCAACCCTCCGGAGGGGGA GGGGGACGAGGATGAATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11192:304..522+

>mRNA_M-pyrifera_M_contig11192.2490.1 ID=mRNA_M-pyrifera_M_contig11192.2490.1|Name=mRNA_M-pyrifera_M_contig11192.2490.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=438bp|location=Sequence derived from alignment at M-pyrifera_M_contig11192:304..522+ (Macrocystis pyrifera P11B4 male)
TGGCCCGGAGCCATTTCCGTCGCTTTCGGCAAGCGCTTCACCAACGTATA
CTCGGGGGACGGCGTCAAGTTCGGAGCGGAGGGCCCGTTCCAGCCCCCGC
CGCCGCCGATGCTGCAGTCCGAGTGGGCTCCGGGGGAGGACGAGGAGGGG
CTCGCGGAGCAAGCGGACGTGCTGGTCGATCCCAACCCTCCGGAGGGGGA
GGGGGACGAGGATGAATGATGGCCCGGAGCCATTTCCGTCGCTTTCGGCA
AGCGCTTCACCAACGTATACTCGGGGGACGGCGTCAAGTTCGGAGCGGAG
GGCCCGTTCCAGCCCCCGCCGCCGCCGATGCTGCAGTCCGAGTGGGCTCC
GGGGGAGGACGAGGAGGGGCTCGCGGAGCAAGCGGACGTGCTGGTCGATC
CCAACCCTCCGGAGGGGGAGGGGGACGAGGATGAATGA
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