mRNA_M-pyrifera_M_contig111916.2489.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111916.2489.1
Unique NamemRNA_M-pyrifera_M_contig111916.2489.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111916.2489.1 vs. uniprot
Match: A0A3D5D9I4_9GAMM (Antibiotic biosynthesis monooxygenase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5D9I4_9GAMM)

HSP 1 Score: 78.6 bits (192), Expect = 1.510e-17
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = 1
Query:    1 DGCIDVYMALSDASPNELLLVQQWETRPHYERYLAWRAETGVVDKLAAMADGEVSIRFFERF 186
            DGC ++Y+  +   P  L++++QW+TR  YE+YLAWR ETGVVD+L AM DGE + RFF+ F
Sbjct:   34 DGCNNLYIVQNQDDPLALVVIEQWDTRLKYEKYLAWRTETGVVDELVAMLDGEPTFRFFDYF 95          
BLAST of mRNA_M-pyrifera_M_contig111916.2489.1 vs. uniprot
Match: W4LP20_9BACT (ABM domain-containing protein n=2 Tax=Candidatus Entotheonella TaxID=93171 RepID=W4LP20_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 5.020e-16
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    1 DGC--IDVYMALSDASPNELLLVQQWETRPHYERYLAWRAETGVVDKLAAMADGEVSIRFFERFDA 192
            +GC  IDVY  + D +   L+L ++WE+RPHYE+YLAWR ETGVV+KL +M  G  SIR+F+  DA
Sbjct:   34 EGCLGIDVYGNMDDGA--NLVLYERWESRPHYEKYLAWRQETGVVEKLGSMLAGPPSIRYFDPVDA 97          
BLAST of mRNA_M-pyrifera_M_contig111916.2489.1 vs. uniprot
Match: A0A2A4LYM9_9GAMM (Antibiotic biosynthesis monooxygenase n=1 Tax=Cellvibrionales bacterium TaxID=2026722 RepID=A0A2A4LYM9_9GAMM)

HSP 1 Score: 73.9 bits (180), Expect = 9.840e-16
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 DGCIDVYMALSDASPNELLLVQQWETRPHYERYLAWRAETGVVDKLAAMADGEVSIRFFE 180
            DGCI+VY       P  ++ V++WE+R HYE+YLAWR ETG +D +AAM     SIRFF+
Sbjct:   34 DGCIEVYATQDQDDPTTVVAVEKWESRQHYEKYLAWRTETGAMDGIAAMVTQPPSIRFFD 93          
BLAST of mRNA_M-pyrifera_M_contig111916.2489.1 vs. uniprot
Match: A0A523NVU9_9PROT (Antibiotic biosynthesis monooxygenase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NVU9_9PROT)

HSP 1 Score: 72.0 bits (175), Expect = 5.810e-15
Identity = 31/64 (48.44%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 DGCIDVYMALSDASPNELLLVQQWETRPHYERYLAWRAETGVVDKLAAMADGEVSIRFFERFDA 192
            DGC  VY+  +      L+L++ WE+R  YE+YLAWR ETGV+D L AM +G  SIR+F+  D+
Sbjct:   34 DGCQGVYVVENQDKAGNLVLIETWESRAKYEKYLAWRQETGVLDALGAMCEGAPSIRYFDPVDS 97          
BLAST of mRNA_M-pyrifera_M_contig111916.2489.1 vs. uniprot
Match: A0A523H8Z0_9BACT (Antibiotic biosynthesis monooxygenase n=1 Tax=Caldithrix sp. TaxID=1962856 RepID=A0A523H8Z0_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 8.240e-15
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 1
Query:    1 DGCIDVYMALSDASPNELLLVQQWETRPHYERYLAWRAETGVVDKLAAMADGEVSIRFFERFDA 192
            DGC  + +  +  + + L+LVQ W++  H+++YLAWR ETGV+DK+ AM  G  SIR+FE+ DA
Sbjct:   34 DGCRGITVYSNQDNSSNLVLVQHWDSPEHHQKYLAWRTETGVMDKIGAMLSGAPSIRYFEKVDA 97          
BLAST of mRNA_M-pyrifera_M_contig111916.2489.1 vs. uniprot
Match: A0A2E4KGT3_9PROT (Antibiotic biosynthesis monooxygenase n=1 Tax=Pelagibacterales bacterium TaxID=2026776 RepID=A0A2E4KGT3_9PROT)

HSP 1 Score: 70.9 bits (172), Expect = 1.660e-14
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1
Query:    1 DGCIDVYMALSDASPNELLLVQQWETRPHYERYLAWRAETGVVDKLAAMADGEVSIRFFERFDA 192
            +G ID+ +  +   P+ L+  ++WETR HYE+YL+WR ETGV+D L     GE SIR+F+  DA
Sbjct:   34 EGIIDINVLQNQDDPDSLIAYERWETRAHYEKYLSWRTETGVIDALVEATVGEPSIRYFDVTDA 97          
BLAST of mRNA_M-pyrifera_M_contig111916.2489.1 vs. uniprot
Match: A0A800JZC5_9BACT (Antibiotic biosynthesis monooxygenase n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A800JZC5_9BACT)

HSP 1 Score: 70.1 bits (170), Expect = 3.340e-14
Identity = 30/64 (46.88%), Postives = 44/64 (68.75%), Query Frame = 1
Query:    1 DGCIDVYMALSDASPNELLLVQQWETRPHYERYLAWRAETGVVDKLAAMADGEVSIRFFERFDA 192
            DG +D+ +  S    + L+LV++WET+ HYE YL WR ETGV+D+L A  +G  SIR+++  DA
Sbjct:   34 DGFLDIVVHQSQDDKDNLVLVEKWETKDHYESYLGWRQETGVLDQLVAACEGPPSIRYYDITDA 97          
BLAST of mRNA_M-pyrifera_M_contig111916.2489.1 vs. uniprot
Match: A0A352Q4I7_9GAMM (Antibiotic biosynthesis monooxygenase n=2 Tax=Porticoccaceae bacterium TaxID=2026782 RepID=A0A352Q4I7_9GAMM)

HSP 1 Score: 68.9 bits (167), Expect = 9.770e-14
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1
Query:    1 DGCIDVYMALSDASPNELLLVQQWETRPHYERYLAWRAETGVVDKLAAMADGEVSIRFFER 183
            DGCI+VY       P  +L ++QW++R HYE+Y AWR ETG +D L A      SIR+F++
Sbjct:   36 DGCIEVYAHQDQDDPTTILAIEQWDSRQHYEKYFAWRQETGALDALGAWLAQPPSIRYFDK 96          
BLAST of mRNA_M-pyrifera_M_contig111916.2489.1 vs. uniprot
Match: A0A7V0ZMY1_9GAMM (ABM domain-containing protein n=1 Tax=Halieaceae bacterium TaxID=2026743 RepID=A0A7V0ZMY1_9GAMM)

HSP 1 Score: 68.6 bits (166), Expect = 1.320e-13
Identity = 28/61 (45.90%), Postives = 40/61 (65.57%), Query Frame = 1
Query:    1 DGCIDVYMALSDASPNELLLVQQWETRPHYERYLAWRAETGVVDKLAAMADGEVSIRFFER 183
            +GCIDVY      +P  ++ ++QW+TR  YE+Y AWR ETGV+ KL      E S+RFF++
Sbjct:   34 EGCIDVYAYQDQDNPTTIVAIEQWQTRQAYEKYFAWRTETGVMAKLGESLAAEPSLRFFDK 94          
BLAST of mRNA_M-pyrifera_M_contig111916.2489.1 vs. uniprot
Match: K6YAZ0_9ALTE (ABM domain-containing protein n=3 Tax=Glaciecola TaxID=89404 RepID=K6YAZ0_9ALTE)

HSP 1 Score: 66.6 bits (161), Expect = 7.760e-13
Identity = 28/63 (44.44%), Postives = 39/63 (61.90%), Query Frame = 1
Query:    1 DGCIDVYMALSDASPNELLLVQQWETRPHYERYLAWRAETGVVDKLAAMADGEVSIRFFERFD 189
            DGCI V + ++   P  L+L + W +R HYE+Y AWRAETG +D L  M     S+R+F+  D
Sbjct:   34 DGCISVQVVINQDDPLNLILNETWGSRAHYEKYFAWRAETGGLDALGKMLSASPSVRYFDNQD 96          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111916.2489.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5D9I4_9GAMM1.510e-1753.23Antibiotic biosynthesis monooxygenase n=1 Tax=Gamm... [more]
W4LP20_9BACT5.020e-1654.55ABM domain-containing protein n=2 Tax=Candidatus E... [more]
A0A2A4LYM9_9GAMM9.840e-1651.67Antibiotic biosynthesis monooxygenase n=1 Tax=Cell... [more]
A0A523NVU9_9PROT5.810e-1548.44Antibiotic biosynthesis monooxygenase n=1 Tax=Prot... [more]
A0A523H8Z0_9BACT8.240e-1546.88Antibiotic biosynthesis monooxygenase n=1 Tax=Cald... [more]
A0A2E4KGT3_9PROT1.660e-1446.88Antibiotic biosynthesis monooxygenase n=1 Tax=Pela... [more]
A0A800JZC5_9BACT3.340e-1446.88Antibiotic biosynthesis monooxygenase n=1 Tax=Gemm... [more]
A0A352Q4I7_9GAMM9.770e-1445.90Antibiotic biosynthesis monooxygenase n=2 Tax=Port... [more]
A0A7V0ZMY1_9GAMM1.320e-1345.90ABM domain-containing protein n=1 Tax=Halieaceae b... [more]
K6YAZ0_9ALTE7.760e-1344.44ABM domain-containing protein n=3 Tax=Glaciecola T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111916contigM-pyrifera_M_contig111916:365..559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size195
Cds size174
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.5282588-CDS-M-pyrifera_M_contig111916:364..5381622815632.5282588-CDS-M-pyrifera_M_contig111916:364..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111916 365..538 -
1692277496.7320585-CDS-M-pyrifera_M_contig111916:364..5381692277496.7320585-CDS-M-pyrifera_M_contig111916:364..538Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111916 365..538 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.5425453-UTR-M-pyrifera_M_contig111916:538..5591622815632.5425453-UTR-M-pyrifera_M_contig111916:538..559Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111916 539..559 -
1692277496.7408514-UTR-M-pyrifera_M_contig111916:538..5591692277496.7408514-UTR-M-pyrifera_M_contig111916:538..559Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111916 539..559 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111916.2489.1prot_M-pyrifera_M_contig111916.2489.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111916 365..538 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111916.2489.1

>prot_M-pyrifera_M_contig111916.2489.1 ID=prot_M-pyrifera_M_contig111916.2489.1|Name=mRNA_M-pyrifera_M_contig111916.2489.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=58bp
MALSDASPNELLLVQQWETRPHYERYLAWRAETGVVDKLAAMADGEVSIR
FFERFDA*
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mRNA from alignment at M-pyrifera_M_contig111916:365..559-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111916.2489.1 ID=mRNA_M-pyrifera_M_contig111916.2489.1|Name=mRNA_M-pyrifera_M_contig111916.2489.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=195bp|location=Sequence derived from alignment at M-pyrifera_M_contig111916:365..559- (Macrocystis pyrifera P11B4 male)
GACGGATGTATCGACGTCTACATGGCGTTGAGTGACGCCAGTCCGAACGA ATTACTCCTCGTCCAGCAATGGGAGACCCGCCCGCATTACGAACGTTATC TCGCCTGGCGGGCGGAAACCGGAGTCGTCGACAAACTTGCGGCGATGGCG GACGGCGAAGTGTCGATCCGGTTCTTCGAGCGATTCGACGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111916:365..559-

>mRNA_M-pyrifera_M_contig111916.2489.1 ID=mRNA_M-pyrifera_M_contig111916.2489.1|Name=mRNA_M-pyrifera_M_contig111916.2489.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=348bp|location=Sequence derived from alignment at M-pyrifera_M_contig111916:365..559- (Macrocystis pyrifera P11B4 male)
ATGGCGTTGAGTGACGCCAGTCCGAACGAATTACTCCTCGTCCAGCAATG
GGAGACCCGCCCGCATTACGAACGTTATCTCGCCTGGCGGGCGGAAACCG
GAGTCGTCGACAAACTTGCGGCGATGGCGGACGGCGAAGTGTCGATCCGG
TTCTTCGAGCGATTCGACGCCTGAATGGCGTTGAGTGACGCCAGTCCGAA
CGAATTACTCCTCGTCCAGCAATGGGAGACCCGCCCGCATTACGAACGTT
ATCTCGCCTGGCGGGCGGAAACCGGAGTCGTCGACAAACTTGCGGCGATG
GCGGACGGCGAAGTGTCGATCCGGTTCTTCGAGCGATTCGACGCCTGA
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