mRNA_M-pyrifera_M_contig111909.2487.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111909.2487.1
Unique NamemRNA_M-pyrifera_M_contig111909.2487.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111909.2487.1 vs. uniprot
Match: A0A355VXJ3_9PROT (Ribonucleotide-diphosphate reductase subunit beta (Fragment) n=1 Tax=Holosporales bacterium TaxID=2053559 RepID=A0A355VXJ3_9PROT)

HSP 1 Score: 102 bits (253), Expect = 1.030e-27
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 GLPEQYPGATNPFPWMSEVIDLKKEKNFFETRVTEYQTGGALSWD 135
            GLPEQYPGATNPFPWMSEV+DLKKEKNFFETRVTEYQTGGALSWD
Sbjct:    8 GLPEQYPGATNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 52
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BLAST of mRNA_M-pyrifera_M_contig111909.2487.1 vs. uniprot
Match: A0A351KS37_9GAMM (Ribonucleoside-diphosphate reductase (Fragment) n=1 Tax=Methylococcaceae bacterium TaxID=1933926 RepID=A0A351KS37_9GAMM)

HSP 1 Score: 97.1 bits (240), Expect = 1.600e-24
Identity = 40/45 (88.89%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 GLPEQYPGATNPFPWMSEVIDLKKEKNFFETRVTEYQTGGALSWD 135
            GLP+QYPGA NPFPWMSE++DLKKEKNFFETRVTEYQTGGAL+WD
Sbjct:  110 GLPDQYPGAQNPFPWMSEILDLKKEKNFFETRVTEYQTGGALNWD 154
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BLAST of mRNA_M-pyrifera_M_contig111909.2487.1 vs. uniprot
Match: A0A6L7MX87_9GAMM (Ribonucleoside-diphosphate reductase (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7MX87_9GAMM)

HSP 1 Score: 96.3 bits (238), Expect = 2.880e-24
Identity = 40/45 (88.89%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 GLPEQYPGATNPFPWMSEVIDLKKEKNFFETRVTEYQTGGALSWD 135
            GLPE+YPGA NPFPWMSE++DLKKEKNFFETRVTEYQTGGAL+WD
Sbjct:  106 GLPERYPGARNPFPWMSEIMDLKKEKNFFETRVTEYQTGGALNWD 150
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BLAST of mRNA_M-pyrifera_M_contig111909.2487.1 vs. uniprot
Match: UPI00190DD1C7 (ribonucleotide-diphosphate reductase subunit beta n=1 Tax=Halochromatium glycolicum TaxID=85075 RepID=UPI00190DD1C7)

HSP 1 Score: 102 bits (253), Expect = 2.900e-24
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 GLPEQYPGATNPFPWMSEVIDLKKEKNFFETRVTEYQTGGALSWD 135
            GLPEQYPGATNPFPWMSEV+DLKKEKNFFETRVTEYQTGGALSWD
Sbjct:  433 GLPEQYPGATNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 477
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BLAST of mRNA_M-pyrifera_M_contig111909.2487.1 vs. uniprot
Match: UPI001903A8F5 (ribonucleotide-diphosphate reductase subunit beta n=1 Tax=Rhabdochromatium marinum TaxID=48729 RepID=UPI001903A8F5)

HSP 1 Score: 102 bits (253), Expect = 3.010e-24
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 GLPEQYPGATNPFPWMSEVIDLKKEKNFFETRVTEYQTGGALSWD 135
            GLPEQYPGATNPFPWMSEV+DLKKEKNFFETRVTEYQTGGALSWD
Sbjct:  440 GLPEQYPGATNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 484
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BLAST of mRNA_M-pyrifera_M_contig111909.2487.1 vs. uniprot
Match: A0A661GM43_9GAMM (Ribonucleotide-diphosphate reductase subunit beta (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661GM43_9GAMM)

HSP 1 Score: 94.0 bits (232), Expect = 3.840e-24
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 GLPEQYPGATNPFPWMSEVIDLKKEKNFFETRVTEYQTGGALSWD 135
            GL EQYPGA NPFPWMSE++DL+KEKNFFETRVTEYQTGGALSWD
Sbjct:   40 GLAEQYPGAQNPFPWMSEMMDLRKEKNFFETRVTEYQTGGALSWD 84
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BLAST of mRNA_M-pyrifera_M_contig111909.2487.1 vs. uniprot
Match: A0A5M8FHC0_9GAMM (Ribonucleoside-diphosphate reductase subunit beta n=2 Tax=Thiohalocapsa marina TaxID=424902 RepID=A0A5M8FHC0_9GAMM)

HSP 1 Score: 100 bits (250), Expect = 5.020e-24
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 GLPEQYPGATNPFPWMSEVIDLKKEKNFFETRVTEYQTGGALSWD 135
            GLPEQYPGATNPFPWMSEV+DLKKEKNFFETRVTEYQTGG+LSWD
Sbjct:  371 GLPEQYPGATNPFPWMSEVLDLKKEKNFFETRVTEYQTGGSLSWD 415
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BLAST of mRNA_M-pyrifera_M_contig111909.2487.1 vs. uniprot
Match: A0A846HNY3_9GAMM (Ribonucleoside-diphosphate reductase subunit beta n=3 Tax=Chromatiaceae TaxID=1046 RepID=A0A846HNY3_9GAMM)

HSP 1 Score: 100 bits (249), Expect = 5.640e-24
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 GLPEQYPGATNPFPWMSEVIDLKKEKNFFETRVTEYQTGGALSWD 135
            GLPEQYPGA+NPFPWMSEV+DLKKEKNFFETRVTEYQTGGALSWD
Sbjct:  348 GLPEQYPGASNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALSWD 392
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BLAST of mRNA_M-pyrifera_M_contig111909.2487.1 vs. uniprot
Match: A0A6N8ECA3_9GAMM (Ribonucleoside-diphosphate reductase n=1 Tax=Allochromatium palmeri TaxID=231048 RepID=A0A6N8ECA3_9GAMM)

HSP 1 Score: 100 bits (250), Expect = 6.980e-24
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 GLPEQYPGATNPFPWMSEVIDLKKEKNFFETRVTEYQTGGALSWD 135
            GLPEQYPGATNPFPWMSEV+DLKKEKNFFETRVTEYQTGGAL+WD
Sbjct:  417 GLPEQYPGATNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALNWD 461
[Close]
BLAST of mRNA_M-pyrifera_M_contig111909.2487.1 vs. uniprot
Match: W9VUJ8_9GAMM (Ribonucleoside-diphosphate reductase n=1 Tax=Imhoffiella purpurea TaxID=1249627 RepID=W9VUJ8_9GAMM)

HSP 1 Score: 100 bits (250), Expect = 7.100e-24
Identity = 43/45 (95.56%), Postives = 45/45 (100.00%), Query Frame = 1 
Query:    1 GLPEQYPGATNPFPWMSEVIDLKKEKNFFETRVTEYQTGGALSWD 135
            GLPEQYPGATNPFPWMSEV+DLKKEKNFFETRVTEYQTGGAL+WD
Sbjct:  420 GLPEQYPGATNPFPWMSEVLDLKKEKNFFETRVTEYQTGGALNWD 464
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111909.2487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A355VXJ3_9PROT1.030e-2797.78Ribonucleotide-diphosphate reductase subunit beta ... [more]
A0A351KS37_9GAMM1.600e-2488.89Ribonucleoside-diphosphate reductase (Fragment) n=... [more]
A0A6L7MX87_9GAMM2.880e-2488.89Ribonucleoside-diphosphate reductase (Fragment) n=... [more]
UPI00190DD1C72.900e-2497.78ribonucleotide-diphosphate reductase subunit beta ... [more]
UPI001903A8F53.010e-2497.78ribonucleotide-diphosphate reductase subunit beta ... [more]
A0A661GM43_9GAMM3.840e-2488.89Ribonucleotide-diphosphate reductase subunit beta ... [more]
A0A5M8FHC0_9GAMM5.020e-2495.56Ribonucleoside-diphosphate reductase subunit beta ... [more]
A0A846HNY3_9GAMM5.640e-2495.56Ribonucleoside-diphosphate reductase subunit beta ... [more]
A0A6N8ECA3_9GAMM6.980e-2495.56Ribonucleoside-diphosphate reductase n=1 Tax=Alloc... [more]
W9VUJ8_9GAMM7.100e-2495.56Ribonucleoside-diphosphate reductase n=1 Tax=Imhof... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111909contigM-pyrifera_M_contig111909:450..587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score100.1
Seed ortholog evalue2.8e-19
Seed eggNOG ortholog1249627.D779_3012
Preferred namenrdB
KEGG rclassRC00613
KEGG koko:K00526
KEGG ReactionR02017,R02018,R02019,R02024
KEGG Pathwayko00230,ko00240,ko01100,map00230,map00240,map01100
KEGG ModuleM00053
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
EggNOG OGs1MWUS@1224,1RMJC@1236,1WWJN@135613,COG0208@1,COG0208@2
EC1.17.4.1
COG Functional cat.F
BiGG ReactioniJN746.PP_1177
Best tax levelChromatiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03400
Exons1
Model size138
Cds size138
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.4296036-CDS-M-pyrifera_M_contig111909:449..5871622815632.4296036-CDS-M-pyrifera_M_contig111909:449..587Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111909 450..587 -
1692277496.6841106-CDS-M-pyrifera_M_contig111909:449..5871692277496.6841106-CDS-M-pyrifera_M_contig111909:449..587Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111909 450..587 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111909.2487.1prot_M-pyrifera_M_contig111909.2487.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111909 450..587 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111909.2487.1

>prot_M-pyrifera_M_contig111909.2487.1 ID=prot_M-pyrifera_M_contig111909.2487.1|Name=mRNA_M-pyrifera_M_contig111909.2487.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=46bp
GLPEQYPGATNPFPWMSEVIDLKKEKNFFETRVTEYQTGGALSWD*
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mRNA from alignment at M-pyrifera_M_contig111909:450..587-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111909.2487.1 ID=mRNA_M-pyrifera_M_contig111909.2487.1|Name=mRNA_M-pyrifera_M_contig111909.2487.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=138bp|location=Sequence derived from alignment at M-pyrifera_M_contig111909:450..587- (Macrocystis pyrifera P11B4 male)
GGCCTGCCGGAGCAGTATCCGGGGGCAACGAATCCGTTTCCGTGGATGAG
TGAAGTGATCGACCTGAAAAAGGAAAAGAACTTCTTCGAAACCCGGGTAA
CGGAATATCAGACTGGCGGCGCGCTTAGCTGGGACTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111909:450..587-

>mRNA_M-pyrifera_M_contig111909.2487.1 ID=mRNA_M-pyrifera_M_contig111909.2487.1|Name=mRNA_M-pyrifera_M_contig111909.2487.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=276bp|location=Sequence derived from alignment at M-pyrifera_M_contig111909:450..587- (Macrocystis pyrifera P11B4 male)
GGCCTGCCGGAGCAGTATCCGGGGGCAACGAATCCGTTTCCGTGGATGAG
TGAAGTGATCGACCTGAAAAAGGAAAAGAACTTCTTCGAAACCCGGGTAA
CGGAATATCAGACTGGCGGCGCGCTTAGCTGGGACTAAGGCCTGCCGGAG
CAGTATCCGGGGGCAACGAATCCGTTTCCGTGGATGAGTGAAGTGATCGA
CCTGAAAAAGGAAAAGAACTTCTTCGAAACCCGGGTAACGGAATATCAGA
CTGGCGGCGCGCTTAGCTGGGACTAA
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