mRNA_M-pyrifera_M_contig111901.2484.1 (mRNA) Macrocystis pyrifera P11B4 male
|
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: A0A6G0XV66_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XV66_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 1.420e-13 Identity = 41/131 (31.30%), Postives = 74/131 (56.49%), Query Frame = 1
Query: 1 LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDRFTQGLLRGGDSKARFRALTACLTRLEAAVQQADDMLLLFEEF 393
++Q TL ++AL+P R + + N+QE+PKR DYN Q T Y + ++ ++ +V R ++++ L+ RR S+ +L+ R Q L+ D K +F ++ L RL+ ++ D ML+LF++F
Sbjct: 467 VEQKTLGEMALLPAAETRTRLFDMYRDKLLNLQEIPKRADYNPQFTLYCWSIDDNRLTRRLVERTQESLVKLRTRRKLEAESHKDLITRSDQ-LVEQHD-KEKFDRVSWSLDRLDRSILHLDRMLMLFDQF 595
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: A0A024UGS9_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UGS9_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 9.180e-13 Identity = 42/131 (32.06%), Postives = 71/131 (54.20%), Query Frame = 1
Query: 1 LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDRFTQGLLRGGDSKARFRALTACLTRLEAAVQQADDMLLLFEEF 393
L+Q TL ++AL+P R + + N+QE+PKR DYN Q T Y + ++ ++ ++ R T++ L+ RR S+ +L+ R Q L+ D +F ++ L RL+ A D ML+LF++F
Sbjct: 491 LEQKTLGEMALLPAAETRSRLFEMYRDKLLNLQEIPKRTDYNPQFTLYCWSIDDARLTRRLLERAQSTIVKLRARRKGEAESHKDLIARSDQ-LVEQNDLD-KFDRVSRSLDRLDRATLHLDHMLMLFDQF 619
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: A0A3R6W0E4_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6W0E4_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 9.460e-13 Identity = 42/131 (32.06%), Postives = 71/131 (54.20%), Query Frame = 1
Query: 1 LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDRFTQGLLRGGDSKARFRALTACLTRLEAAVQQADDMLLLFEEF 393
L+Q TL ++AL+P R + + N+QE+PKR DYN Q T Y + ++ ++ ++ R T++ L+ RR S+ +L+ R Q L+ D +F ++ L RL+ A D ML+LF++F
Sbjct: 664 LEQKTLGEMALLPAAETRSRLFEMYRDKLLNLQEIPKRTDYNPQFTLYCWSIDDARLTRRLLERAQSTIVKLRARRKGEAESHKDLIARSDQ-LVEQNDLD-KFDRVSRSLDRLDRATLHLDHMLMLFDQF 792
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: A0A485LNW3_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LNW3_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 8.040e-12 Identity = 43/131 (32.82%), Postives = 70/131 (53.44%), Query Frame = 1
Query: 1 LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDRFTQGLLRGGDSKARFRALTACLTRLEAAVQQADDMLLLFEEF 393
L+Q TL ++AL+P R + + N+QE+PKR DYN Q T Y + V+ ++ +V R T + L+ RR +S+ +L+ R Q L+ D +F ++ L RL + D ML+LF++F
Sbjct: 487 LEQKTLGEMALLPAAETRSRLFEMYRDKLLNLQEIPKRTDYNPQFTLYCWSVDDTRLTRRLVERTMDTTVKLRARRKDQADSHKDLIARSDQ-LVEQHDLD-KFDRVSRSLDRLXXGILHLDRMLMLFDQF 615
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: UPI001939EB9D (DNA-directed RNA polymerase III subunit RPC3-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI001939EB9D) HSP 1 Score: 70.9 bits (172), Expect = 1.060e-11 Identity = 33/89 (37.08%), Postives = 52/89 (58.43%), Query Frame = 1
Query: 1 LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDR 267
++Q + A++P K A+ L Y + MQE+PK D+ T+YLF VN KKVV T++SR +K ++NL R+ F N L+++
Sbjct: 347 MEQKQVEDFAMIPSKEAKELLYQMWAENLLVMQEIPKTADHAPSRTYYLFNVNIKKVVRTLLSRLNKMLVNLLARQQFEVKGNKRLLEK 435
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: T0QKL7_SAPDV (DNA-directed RNA polymerase III subunit RPC3 n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QKL7_SAPDV) HSP 1 Score: 63.2 bits (152), Expect = 5.380e-9 Identity = 30/91 (32.97%), Postives = 51/91 (56.04%), Query Frame = 1
Query: 4 DQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDRFTQ 276
++ T+ +LAL+P R + L MQE+PKR DYN Q T Y + V+HK ++ +V R ++++L+ RR + + +L+ R Q
Sbjct: 488 EEKTIGELALLPASETRSRLFGLFQAKLIQMQEIPKRADYNPQYTLYCWSVDHKALIRRLVERIEISLVHLRTRRQSEADEHKDLIARSDQ 578
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: A0A1X7V828_AMPQE (DNA-directed RNA polymerase III subunit RPC3 n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7V828_AMPQE) HSP 1 Score: 61.6 bits (148), Expect = 1.810e-8 Identity = 41/148 (27.70%), Postives = 69/148 (46.62%), Query Frame = 1
Query: 1 LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDRFT-----QGLLRGGDSKARFR-ALTAC-----------LTRLEAAVQQADDMLLLFEEF 393
L+Q +S +AL+P K+A+ + Y+L F +QEVP+ DY TF+LF + ++ R +K + NL R + N L++++ Q + + ALT + +LEA+ Q + LL FEE+
Sbjct: 377 LEQKQISDMALIPNKKAKEILYSLLAENFITLQEVPRSNDYAPSRTFHLFSIELNTTTRIVLQRCYKALGNLMTCRKEEGSKNKRLLEKYKLWLRQQEAFQNEEEPIEIEEALTPTEREMTENVMKKIAKLEASELQLMESLLTFEEY 524
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: W4H4R1_9STRA (DNA-directed RNA polymerase III subunit RPC3 n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H4R1_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 3.450e-8 Identity = 38/131 (29.01%), Postives = 66/131 (50.38%), Query Frame = 1
Query: 1 LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDRFTQGLLRGGDSKARFRALTACLTRLEAAVQQADDMLLLFEEF 393
L+Q L ++AL+P R + + N+QE+PKR DYN Q T Y + V+ ++ +V R ++++ L+ RR S+ +L+ R Q L+ D +F ++ L ML+LF++F
Sbjct: 493 LEQKALGEMALLPAAETRSRLFDMYRDKLLNLQEIPKRTDYNPQFTLYCWSVDDIRLTRRLVERAQESIVKLRTRRKDEAESHKDLIARSDQ-LVEQNDLD-KFDRVSRSLXXXXXXXXXXXRMLMLFDQF 621
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: A0A168KU11_MUCCL (DNA-directed RNA polymerase III subunit RPC3 n=3 Tax=Mucor TaxID=4830 RepID=A0A168KU11_MUCCL) HSP 1 Score: 60.1 bits (144), Expect = 6.320e-8 Identity = 39/137 (28.47%), Postives = 70/137 (51.09%), Query Frame = 1
Query: 1 LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDRF-------TQGLLRGGDSKARFRALTACLTRLEAAVQQADDMLLLFEE 390
L+++ + +LA++P K R L G ++QEVP+ GD T +F L+ V+ K E +++ H+T+ NLQ R+N + L+++ LL D KA + ++R+E A + D ML++ +
Sbjct: 424 LEEAQIQKLAMLPPKDVRFKLGVLLTHGIVDIQEVPRSGDRATSRSFLLWFVSIDKCFEALITDIHRTITNLQQRKNEELVRRSRLLEKLGRIDVLANMELLNEID-KAEVSKMDNIVSRIEIAKDRLDAMLMILRD 559
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Match: A0A1B6G3S8_9HEMI (DNA-directed RNA polymerase III subunit RPC3 (Fragment) n=2 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6G3S8_9HEMI) HSP 1 Score: 58.9 bits (141), Expect = 1.490e-7 Identity = 30/90 (33.33%), Postives = 50/90 (55.56%), Query Frame = 1
Query: 1 LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRG-DYNTQATFYLFGVNHKKVVETMVSRFHKTMLNLQLRRNFTYNSNTELVDR 267
++Q + QLA++P+K A+HL Y L F MQE+ K T++LF V+ +V ++ +K + N RRNF N N+ L+++
Sbjct: 242 MEQDQIQQLAMIPDKEAKHLTYKLLQENFLQMQELRKPTVSSGPNKTYFLFHVDLNQVARMVLDTCYKALANSLTRRNFEKNENSRLIEK 331 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111901.2484.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig111901.2484.1 >prot_M-pyrifera_M_contig111901.2484.1 ID=prot_M-pyrifera_M_contig111901.2484.1|Name=mRNA_M-pyrifera_M_contig111901.2484.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp LDQSTLSQLALVPEKRARHLAYTLALGGFANMQEVPKRGDYNTQATFYLFback to top mRNA from alignment at M-pyrifera_M_contig111901:3..538+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig111901.2484.1 ID=mRNA_M-pyrifera_M_contig111901.2484.1|Name=mRNA_M-pyrifera_M_contig111901.2484.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=536bp|location=Sequence derived from alignment at M-pyrifera_M_contig111901:3..538+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig111901:3..538+ >mRNA_M-pyrifera_M_contig111901.2484.1 ID=mRNA_M-pyrifera_M_contig111901.2484.1|Name=mRNA_M-pyrifera_M_contig111901.2484.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig111901:3..538+ (Macrocystis pyrifera P11B4 male)back to top |