mRNA_M-pyrifera_M_contig11189.2483.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11189.2483.1
Unique NamemRNA_M-pyrifera_M_contig11189.2483.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig11189.2483.1 vs. uniprot
Match: D7FJG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG9_ECTSI)

HSP 1 Score: 581 bits (1497), Expect = 2.690e-194
Identity = 326/482 (67.63%), Postives = 359/482 (74.48%), Query Frame = 1 
Query:  298 PPSPAPLSG-VVEEQNIAAIRDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQKVEQCPSTLPDSVLSELVDTLLTRVQCSAASREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCAGYGGRAREAVLQSVYRLLDRNIALPPERLFNPLISAASDHVSTGSSKKR--APRHTRGVQSEDWTRQP-GTVASGPLPSGGHPGGRPLLTVPSGSGSGSGGFV-SLNGVSMVLGGEETPRWGKAGGGEGG--PDSSPRLDYLRAKSAATRLKRSAYWFLGEYCCQLTGTPTAAGSLHDLEQSPSSQTIPAGKDLRDVLALSNPHRPRGAWGKA-GSLEGMETGATAVAHPVVSVMNGATVSILLRLKHAVMFEDFQTRHTCASALCKIALRLPEPVRFDAYCFLKGLVDTAAIFPLTAPLGGANATAESDSGPGGGGDDREKLLASYRQEQEAVLERVET-GAY 1716
            P +PA  S  VVEEQN AAIRDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQ+VEQCPSTLPD+VLSELVDTLLTRVQCSA SREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCAGYGGRARE+VLQSVYR+LDR+IALPP+       SAA+D  STGS   R  A RH RG+ SEDWTRQP  T  +     G  PG  P   V  G  SGS GF  SLNGVSM+LGG+E  RWG AGGG  G  P  +PRL YLR KSAATRLKRSA+WFLGEYCCQLTG P  A S  + +QSP       G +L DV     P   +G  G+    L  M   A+A AHPVVS MNGAT+SIL+RLKHA MFEDFQTR TCASALCKIALRLP+P+RFDAYCFL+GL D+AA+FPL          +  D+ PG  G   E LL  + +EQEA+ ER+E  GAY
Sbjct:  491 PSTPATASRKVVEEQNTAAIRDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCAGYGGRARESVLQSVYRILDRSIALPPDNPRTAFASAANDRASTGSVGDRGGAARHVRGMASEDWTRQPISTGGAQGSEDGSQPGRIPPTIVSGGGSSGSSGFATSLNGVSMILGGDEASRWGNAGGGGAGGDPSETPRLKYLRTKSAATRLKRSAFWFLGEYCCQLTGAP--AESSQNPDQSPPPAET-GGNELLDVWTSPVPSPTKGGTGRLPAGLGDMGAEASAEAHPVVSGMNGATISILMRLKHAAMFEDFQTRSTCASALCKIALRLPDPIRFDAYCFLQGLADSAALFPLVP--------SRQDNDPGCSG---EGLLEGHWREQEALFERIENAGAY 958
[Close]
BLAST of mRNA_M-pyrifera_M_contig11189.2483.1 vs. uniprot
Match: A0A6H5KD03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD03_9PHAE)

HSP 1 Score: 562 bits (1449), Expect = 9.870e-186
Identity = 335/609 (55.01%), Postives = 383/609 (62.89%), Query Frame = 1 
Query:    1 SYQTMQSQNRGGGDGADGSVGGFSIATTGKASATRGALEGERPSAGKAGPRPPSICIRQGFAEALAKAGGXXXXXXXXXIDTTXXXXXXXXAGFNLLGLPPSPAPLSGVVE---------------------------------EQNIAAIRDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQKVEQCPSTLPDSVLSELVDTLLTRVQCSAASREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCAGYGGRAREAVLQSVYRLLDRNIALPPERLFNPLISAASDHVSTGSSKKR--APRHTRGVQSEDWTRQPGTVASGPLPSGGHPGGRPLLTVPSGSGSGSGGFVSLNGVSMVLGGEETPRWGKAGGGEGGPDSSPRLDYLRAKSAATRLKRSAYWFLGEYCCQLTGTPTAAGSLHDLEQSPSSQTIPAGKDLRDVLALSNPHRPRGAWGKA-GSLEGMETGATAVAHPVVSVMNGATVSILLRLKHAVMFEDFQTRHTCASALCKIALRLPEPVRFDAYCFLKGLVDTAAIFPLTAPLGGANATAESDSGPGGGGDDREKLLASYRQEQEAVLERVET-GAY 1716
            SYQTMQ+QNR G    DGS GG S      A+ +  ++ GER  +G +GPRPPS+  R GF+E L  +G          + T         + FNLLGLPPSPAP SG+                                   +   AAIRDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQ+VEQCPSTLPD+VLSELVDTLLTRVQCSA SREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCAGYGGRARE+VLQSVYR+LDR+IALPP+       SAA++  STGS   R  A RH RG+ SEDWTRQP                                      +S              GG +G P  +PRL YLRAKSAATRLKRSA+WFLGEYC QLTG P  +   HD +  P ++T   G +L DV     P   +G  G+    L  M   A+A AHPVVS MNGAT+SIL+RLKHA MFEDFQTR TCASALCKIALRLP+P+RFDAYCFL+GL D+AA+FPL          +  D+ PG  G   E LL  + +EQEA+ ER+E  GAY
Sbjct:  547 SYQTMQNQNRAG---VDGSSGGSSTVLASPAATS--SVGGERRGSGTSGPRPPSVNARHGFSEGLLASGRDGSQPVTPEVGT--------GSAFNLLGLPPSPAPRSGITRAPSAWGPTAGXXXXXXXXXXXXXXRRLARDGGRDGRAAAIRDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQRVEQCPSTLPDTVLSELVDTLLTRVQCSATSREEVIPIALALTESFMYQVPSEEMGRCVLRAWCQCAGYGGRARESVLQSVYRILDRSIALPPDNPRAAFASAANNRASTGSVGDRGGAARHVRGMASEDWTRQP--------------------------------------IST-------------GGAQGDPSETPRLKYLRAKSAATRLKRSAFWFLGEYCRQLTGAPAESSQNHD-QTPPPAKT--GGNELLDVWTSPVPSPTKGGMGRLPAGLGDMGAEASAEAHPVVSGMNGATISILMRLKHAAMFEDFQTRSTCASALCKIALRLPDPIRFDAYCFLQGLADSAALFPLVP--------SRQDNDPGCSG---EGLLEGHWREQEALFERIENAGAY 1077
[Close]
BLAST of mRNA_M-pyrifera_M_contig11189.2483.1 vs. uniprot
Match: A0A835Z8W3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8W3_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.390e-16
Identity = 58/158 (36.71%), Postives = 83/158 (52.53%), Query Frame = 1 
Query:  331 EEQNIAAIRDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPSPLDPQLRGLWDWLQQKVEQCPSTLPDSVLS----------------ELVDTLLTRVQC-----------------------SAASREEVIPIALALTESFMYQVPSEEMGRCVL 687
            E  N+AAIRDLCRA+  H  L+ PH H       AMFLLVPDPS  DP+L+ +W  +Q K+E CP++LP++ L                  LV +L+ R++                        S ASR  ++P ALA+ ESF+ QVP++ +GR ++
Sbjct:  866 EASNMAAIRDLCRAISGHGFLDCPHRH-------AMFLLVPDPSHRDPELQEMWAEVQMKMEACPASLPEASLGAPHGGVPASLSEASLVHLVTSLMARMEACXXXXXXXXXXXXXXXXXXXXXXSEASRGAIVPAALAIAESFVRQVPTDAVGRALV 1016
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11189.2483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJG9_ECTSI2.690e-19467.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KD03_9PHAE9.870e-18655.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z8W3_9STRA1.390e-1636.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11189contigM-pyrifera_M_contig11189:478..8489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons8
Model size1716
Cds size1704
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.1442018-CDS-M-pyrifera_M_contig11189:477..7381622815632.1442018-CDS-M-pyrifera_M_contig11189:477..738Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11189 478..738 -
1692277496.5239568-CDS-M-pyrifera_M_contig11189:477..7381692277496.5239568-CDS-M-pyrifera_M_contig11189:477..738Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11189 478..738 -
1622815632.1568894-CDS-M-pyrifera_M_contig11189:1220..15361622815632.1568894-CDS-M-pyrifera_M_contig11189:1220..1536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11189 1221..1536 -
1692277496.53344-CDS-M-pyrifera_M_contig11189:1220..15361692277496.53344-CDS-M-pyrifera_M_contig11189:1220..1536Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11189 1221..1536 -
1622815632.1670794-CDS-M-pyrifera_M_contig11189:2141..23711622815632.1670794-CDS-M-pyrifera_M_contig11189:2141..2371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11189 2142..2371 -
1692277496.5424325-CDS-M-pyrifera_M_contig11189:2141..23711692277496.5424325-CDS-M-pyrifera_M_contig11189:2141..2371Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11189 2142..2371 -
1622815632.1809974-CDS-M-pyrifera_M_contig11189:3102..32441622815632.1809974-CDS-M-pyrifera_M_contig11189:3102..3244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11189 3103..3244 -
1692277496.554531-CDS-M-pyrifera_M_contig11189:3102..32441692277496.554531-CDS-M-pyrifera_M_contig11189:3102..3244Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11189 3103..3244 -
1622815632.1901805-CDS-M-pyrifera_M_contig11189:4064..41771622815632.1901805-CDS-M-pyrifera_M_contig11189:4064..4177Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11189 4065..4177 -
1692277496.5646694-CDS-M-pyrifera_M_contig11189:4064..41771692277496.5646694-CDS-M-pyrifera_M_contig11189:4064..4177Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11189 4065..4177 -
1622815632.2002594-CDS-M-pyrifera_M_contig11189:5333..55551622815632.2002594-CDS-M-pyrifera_M_contig11189:5333..5555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11189 5334..5555 -
1692277496.5744352-CDS-M-pyrifera_M_contig11189:5333..55551692277496.5744352-CDS-M-pyrifera_M_contig11189:5333..5555Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11189 5334..5555 -
1622815632.2130888-CDS-M-pyrifera_M_contig11189:6949..70571622815632.2130888-CDS-M-pyrifera_M_contig11189:6949..7057Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11189 6950..7057 -
1692277496.586716-CDS-M-pyrifera_M_contig11189:6949..70571692277496.586716-CDS-M-pyrifera_M_contig11189:6949..7057Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11189 6950..7057 -
1622815632.2235134-CDS-M-pyrifera_M_contig11189:8165..84771622815632.2235134-CDS-M-pyrifera_M_contig11189:8165..8477Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11189 8166..8477 -
1692277496.5997436-CDS-M-pyrifera_M_contig11189:8165..84771692277496.5997436-CDS-M-pyrifera_M_contig11189:8165..8477Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11189 8166..8477 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815632.2363548-UTR-M-pyrifera_M_contig11189:8477..84891622815632.2363548-UTR-M-pyrifera_M_contig11189:8477..8489Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11189 8478..8489 -
1692277496.6098528-UTR-M-pyrifera_M_contig11189:8477..84891692277496.6098528-UTR-M-pyrifera_M_contig11189:8477..8489Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11189 8478..8489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11189.2483.1prot_M-pyrifera_M_contig11189.2483.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11189 478..8477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11189.2483.1

>prot_M-pyrifera_M_contig11189.2483.1 ID=prot_M-pyrifera_M_contig11189.2483.1|Name=mRNA_M-pyrifera_M_contig11189.2483.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=568bp
MQSQNRGGGDGADGSVGGFSIATTGKASATRGALEGERPSAGKAGPRPPS
ICIRQGFAEALAKAGGGVGGGGGGKIDTTSGDAGGGGAGFNLLGLPPSPA
PLSGVVEEQNIAAIRDLCRALQQHRLLESPHLHVRSLALEAMFLLVPDPS
PLDPQLRGLWDWLQQKVEQCPSTLPDSVLSELVDTLLTRVQCSAASREEV
IPIALALTESFMYQVPSEEMGRCVLRAWCQCAGYGGRAREAVLQSVYRLL
DRNIALPPERLFNPLISAASDHVSTGSSKKRAPRHTRGVQSEDWTRQPGT
VASGPLPSGGHPGGRPLLTVPSGSGSGSGGFVSLNGVSMVLGGEETPRWG
KAGGGEGGPDSSPRLDYLRAKSAATRLKRSAYWFLGEYCCQLTGTPTAAG
SLHDLEQSPSSQTIPAGKDLRDVLALSNPHRPRGAWGKAGSLEGMETGAT
AVAHPVVSVMNGATVSILLRLKHAVMFEDFQTRHTCASALCKIALRLPEP
VRFDAYCFLKGLVDTAAIFPLTAPLGGANATAESDSGPGGGGDDREKLLA
SYRQEQEAVLERVETGAY
back to top

mRNA from alignment at M-pyrifera_M_contig11189:478..8489-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11189.2483.1 ID=mRNA_M-pyrifera_M_contig11189.2483.1|Name=mRNA_M-pyrifera_M_contig11189.2483.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=8012bp|location=Sequence derived from alignment at M-pyrifera_M_contig11189:478..8489- (Macrocystis pyrifera P11B4 male)
AGTTACCAGACCATGCAGAGCCAAAACCGAGGCGGTGGTGATGGCGCCGA
TGGTAGTGTTGGCGGTTTTAGCATCGCTACAACCGGAAAAGCGAGCGCAA
CCAGAGGGGCTCTTGAGGGCGAGCGACCCAGCGCTGGCAAGGCAGGCCCG
CGACCACCGTCCATATGCATCCGGCAGGGCTTCGCCGAGGCTCTGGCCAA
GGCGGGAGGGGGGGTGGGCGGCGGCGGCGGCGGTAAAATTGACACCACCT
CCGGGGACGCTGGGGGGGGTGGCGCGGGGTTCAACCTTCTTGGGCTCCCC
CCGTCTCCGGCCCCACTGTCTGGGGTTGCCGGGGGGGCGTCTGCCTGGGG
GGCTACTGCGGGGGGGAGCTCTCGCGGGTTGGGAGATATGATGGCGGGAC
AGGTGCGGTGAGCGTTTTGGTTTGTTGGGAGTTTTGGGGCGTCAGCTGTT
TGTTTTTTTTTGGGGAGGACGGGGGCGGGGGGGGGGAGGCGGGAAGGGCG
AGGGGTTTGGGGGAGGCTGTTTTGGAACTGCTGTAACTTTCGTAGTAAAT
CAAATATACTTTTTTTCTTTTTGTGCTTTCAGCTACCGCGGTGAATATGT
ATGTCCTACCGTGAGCATGCGTACGCGGCTTTATAGTAGTCACAGCAGTA
GCGCAGAATGTATTTATGGGCTGGGTGCTGACATCGGCACGGTTGTCTCG
AGTTACGCTTCCTTTCCACACTTGGTGTGCGTGTGTGTTTTTGAAGGACC
TCCGCCTGTCTTCTCCGCTAACCCCAGCCCTTACTCCCTCCCCTAACCAA
CCCCTTCTCCTGACATTCCTGTACATAGCGATGGGACTCTGAGGCCCCAT
ATCTTTTTCGTGAGCGCCTCCAACTGTTGCTTTTTCCGGCTGGCTGCCGT
ATCTCCCGCCTGATACCTCGTACCATCTGTTTTTTTGCCTTATGCGCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCACAACCACCTCC
ACCCCCCACCCAAAACACAACACCACGCCATCCCCCCCACCACTCACACC
CCCACACCACTACACCNNNNNNNNNNCCCCTATTTTTTTCGTTCGCCCCC
CCACCTTTTGTTTTTTTCTGGCTGCTGCCCTATCCCCCCCCCCCTCCCTC
CTCCCCCCTGTTTTTTTTCCTTTTGCCCCCCCCCCCCCCCCCCCCCCCCC
CCTCTTTCCCCCCCCTATTCTAGTGCGCCGTAGCAAAATGAATACCGCAA
GGCGTGACCCAATCCCTCGAAGCCTTGCCTGTTTTTCCAATGGTTGGTTT
TTTTACACAGCACGCCTGACGCTTGTGTTGTACACGCTGTGAGACAAAGC
AGTGGTCATCGCCACCGCGTAACGGCCCCGAAAATTGCGGTTGTGAGCTT
TTAAATGTTGACGCTGCGGGATAAATTGACAGGTGGTGGAAGAGCAGAAC
ATCGCGGCGATCCGAGACCTGTGCCGAGCCTTGCAGCAGCACCGTCTTTT
GGAAAGCCCTCACCTGCATGTGCGCAGCCTAGCTCTCGAGGTGAAACGGA
AGGGGTGTTGACGGTCAGTGATGTGATCATCGTATTTTCAGTGTTTCGTG
CGTTTTGAGAGTGTTTTAGGTGAAGGTGTTGACGATGTCTTACGTATGTG
GTTGGCGCCAGGTGTATGTTGGTCGTCGTGTTTTTTTTTCAGTGTTTTGG
GTGCGTCGTAGTGAAAGCCTCGGGCGACGTATGTGTGTTCGTCGTGTTTT
TTTTAGTGTTCGGAGTGTGCTGGAGGTGAGAAAAGACTTAACGGCGAGTG
CACGTGGTGATCGTGTTTCGGGAGTTCTGAGAGTTTCGAGGAGAAAAGTC
TTCACGAAGAAAGTGACCATCGCGTTCAAGTTGTTTCTCGCGAGTTGTTT
TTGCACATATACACGTGGCACAGATGTGGAATGAGGTGAGCTTAAGGTCT
TTTTTTTCAAGCTTTTTTTCCCCCCCTCACCGATCTGCCGGAGGATAACA
CCACACTATTACGGGGGACCATAGTTAATAGGACCTACGGTACACACAAA
AGCCTGTATATTTACCTATCTTTACGAACAATATTTGGTCCTATTTACTG
CGGTCCCCCGTAATAGGACATACCATAATCTACTGTACAACATCTAGCTC
CTCATCTGCCGTGGTGGGAGTTTGTGCGGGATTTGCATGTTAGGGAGAAC
CATAGTTAATAATAGCACCTGCGGTACACACAAAAGCCTACCTGGTATAT
TTTCCCATTTTTTACTACCAAAATTTGGTCCCATTTACTATGGTCTGCCG
GAATAGTACAAATCCAGCGCAGGAAACATATGCGCTAGCTATATCATGCG
AAGTATTCGGGTCCCACCCCGCAAGATGAGCTATTGTCCATGATGTCCAT
GATGTCGATGATGTCGATGATGCCAGATCGAGAATACATCTGCCTCGGTA
AGGGTCCACATCATGATGAGCTGTCTGCGGGATAGATAACATACAATGTA
ACCACTCTTTCCGGAAATATAAGCTACGCTTGATGTTCATATCGGAGTCC
CAACGGGGATTATGCTCACAGGCAGAGTGGTGCTGGAAAAAAAAAAAGTT
GTTGTGCTCTCGATAGAGAGGACAAAGTACGTTTGGTCCTCGTACACGGA
GCAGCAGCGTGTCTTCTTCGTGCAGCTATGGATTGCTCACCTGCTACGTA
CAGATACGCAGATTGGAGACCCCTGGGTTTGCCTTCGTTTTGTCTGCTTT
GTTTGTTGCTGAGACGGTTTGCCGAGCGGAGAGGCCTGAGGTTTGGTGGG
GCGAAACCCTCGCCCCCTGTGTGGGAAGTCTTGATGGTATTTTCTGACCA
CAGCTGAAACACGCATTTTTTTCCCCTCCCGCGCCTTGTTTTGGCATCCG
TCCCTCCTCCCCCCTCAATGAAAAAAACCTTCAGGCGATGTTTCTATTGG
TGCCGGACCCATCCCCACTCGACCCCCAGCTGCGCGGCCTGTGGGACTGG
TTACAGCAAAAGGTGGAGCAGTGTCCGTCCACCCTTCCTGACTCCGTGCT
GAGCGAGCTGGTGGACACGCTGCTCACGCGGGTGCAGTGCAGCGCCGCGA
GCCGGGAGGAAGTCATTCCCATCGCCCTCGCCCTCACCGAGAGCTTCATG
TACCAGGTAGGGTGGACTCCCCGTGCGCGTTGGAAACTCGCACCCACACA
CAAGCGCACGCGTGCACGGGCGTTACGCGTGAGCGTACGTGTGCGATGCG
GAGTGGTGCAGGCGGGAGTGCACGCCGCCAGCAGCTTTCGTAGGTGGACT
GCCGGGGTTTGTAGCGCGACATTGGCCGCGCTCTTTCCATCCGTGTTTTT
CACACGTGTGGCGTGTCGTGGGGTGGCGCACATACACATGTTTTCGTTCA
TCCCATGATTTGGACCTCCGAGAAATGTTACGTGACGAACGTAAAAATGA
CGAATGCTGTACACACCAAGCAGTCCGGATTGCTGCACAGGGGACAGGGG
ATGATCAACTTGGGGACCCCGAACTACGATGCAAAATGAACTGGTACAAG
TATGACACGCGTGCGCCGCAATGCTGAGGGGTTCTCGCTGCTATGTGCTC
ACGCTATTAATAGACTGCTTGACACAAACACCGCCTTTTTGTTTCTATCG
CGATGCCCGTGTCCCGAAGGGGCGGAGACAATCTTGCCTGTACCCGTACA
CTGCGGTGTTTTGGATGAATGGGCATACACATGTGCCGTATTGTCTAATG
TTGTACAGCTGTCAGATTGTGGTCCCCTATGTAGAGCATACCTATGGAAT
GCATCCTTCATAAGGTCATGTAAAACCCGTACCTGTAGAACACCCATTGG
AAGTATCACTCGATGCTTGCAAAGATGATTTTCGACGAAAAATCCTGGAT
CTCACAGCTGAGGTGCTTTTTTTTTTCTTCAGTTTTCATCGAGAAAAAAT
ATGTTCGTGTTGTTTTTTTTTTCCTTTTTCGTTGCCGCACTCCGTACAGT
TGGCAGTAGATACATGTTCAGTGCGGCGGTTCTACCCGGGTTCATGCCGT
AAGGTAGGGGGCTTTGTGCGAAGTTGGATCTCCAGCCAATGCACGCGGCA
TCGTATAGTTGACGCCAAAACTTCCTCCCTCCCTCCCTCCCTCCCTCCCT
TTCTCTCTCCTTCCCTGCCTCCCTCCCCCTATTCTCTTCCTCTCTCCCTC
TTTTCCCCCCCTCCTCTCTTCCTCCTCGCCTCTCCCTCCCTCCCTCCTGC
TACCCTTCCCCCCCCCCTACCTCTCTCTCTCTTTATCCTTCTTACTAAAC
CTTTTGTTACAGGTCCCGAGCGAGGAAATGGGACGCTGCGTGCTCCGGGC
ATGGTGCCAATGCGCGGGGTACGGAGGCCGGGCGCGAGAGGCCGTGCTGC
AGTCGGTGTACAGACTGCTCGACAGGTCAGGGACATACTCTTCGTTTCTT
CGTTCACGTTGCGGAGTTGGTTATGCTCGCAGCCAACACCGCCTTGCAAC
GACAGAGTCCCGGCTGGCGAGGGATGTTTTTTTTTTTCAAGTCGTTTGAT
ACACAACGGATGTGTCTCCATCTCTACGACGGACGCATGCAGTGGACCAT
CTACTGCAGCTCCTAACCTGCCGTTCGATGACGCTGTGCCGGATGTGTGT
ACAAGTAGTACATACAGATCCAACCCAGGAAACAGGTCCTGTTAATATGT
CATGCAGGGTACACGGCTCCCACCCTGCAGCATGAGCTAGATCATTCAGC
TGGTATAGATCAGGGATACACCTGCCGTGAAAGGTCTAGCTCATGATGTA
GAAATTATCTATCTGCTCTGACCGAGGTGTGGATGTTTCTGACTTGTGTT
TGCGTACGTACACAGGTCGATTTTTGTTTTTTTGCTGTTTTAGCTGCAAA
TTTCCCTCAGCTTGTTGTAGTTTTTTGTTCCCTAATGTTTTTTTTTTTCT
TGCGCTCCAAAGCTACATGGCGCTGAGTTATTGCGAGATCAACCACATGG
CCTGTCCTGCGACCGTGGACTGCATACTAATATGGTGATGTGTCAATGTG
AGAACAACATAGCTCAATGCCCACGGTTAGTTTGGATGGTGTACGTCTTG
GTGCCGCGCGGTGTCTGGTGTTGCCTTATGTGCCGTGCGTCGAGGAGTGT
CTGTTCGAACCCTCCCCTCAAAACGTCCCCCTTGTCGTACGTGCGTACGT
TTCCATCCATGGTTTCCCCCGCGTGTTGGCGTGTGCACTCGCCAGGAACA
TCGCCCTACCGCCCGAGAGGCTGTTCAACCCGCTCATCTCTGCCGCCAGC
GATCATGTTAGCACCGGCAGTTCCAAAAAACGGGCGCCGCGCCATACGAG
GGGGGTGCAGAGCGAAGACTGGACGCGGCAGCCGGGCGTGGCTTGGACAG
TAGGTAAAAAGCTGCAGCAGTTTTGTGCGTCAGCGGTGTGATACGCGCTG
TCAAACGCTGCCTCCTCCTTTTGGTATCAGTATAAGTGTGGCTGTTTGGT
TTTTGTATCGTTTTTTTGTCTTTTTTTTCCCGTCGAGACTGAATCGACTT
TTTGTTTGTTTGTTTTCTGTTTTGATAATTTTTGTGCGTTTGTTTTCCCG
CTGCAAGGCGTGCAAGCCCGTTCAAAGACCCATGAATTTATCTTGATCGT
AGTATAGCGACCAAGATTACTTTGTGAGACAGTATCAAGCGCCTGCCAGG
TATCGGTAGGAAGAGCGTGCAGCGACACGATATGGGTATTATTAGAACCT
GCTTCCCGCGTGTCCGTTCTGCTCCTTACATTGCAGTGCGGACACATCCC
CCATTGTTTTGTACCCCAGCAGCCCGAGCTGCTTTGTTGGTGCGGGTTGT
CCGTCGTCGTGTATGTATATGACATATGTTCCCCTCTGTATGTCCTAAAG
GGGGTCATAATCTCGTTAATCTCTTTCCCACCGCCGCAAGACCTTCTTGA
CCACCTCATTTTTGTATTGGTTTGTTTGTAGTAATTTTTGGTATTTTTGC
GTTTGTTTCCCGCGCTGAAAAGCGTGTATTTCAACTCGTTATTGTTGCCC
CCACCGCCGCATATCCCTTTTCCTACTCCGGCGCATCCCGGTACGCACCC
CAAGGCTCCGCGGACGAGACAGTTGCGTCGGGCCCACTCCCTTCCGGTGG
CCATCCTGGAGGGAGACCGCTGCTGACGGTCCCAAGCGGCAGCGGCAGCG
GTAGCGGCGGGTTTGTTAGCTTGAACGGCGTCTCGATGGTGCTCGGTGGA
GAAGAGACGCCCCGCTGGGGCAAGGCCGGAGGGGGCGAGGGAGGCCCTGA
TTCGTCTCCGCGGTTGGATTACCTCAGGGCCAAAAGTGCAGCCACAAGGT
ACGTACGTTGTTGATAAATCCCAGGCGAAGAACGAAGATGATTCAGGCTT
TTAGTATTATTCCCAGCAGAGTAGAGACAGAATGAGTGACCACGTGTGCA
TCACGCGAACTCACAGAAATAGCCACCAAGTAACCTATAATAGGCCGATA
TTCCGAATAGTCATGAAACTGCCAAAATGCTGAACAACTACATTCGAACA
CATGGACGCACACTCCCTGATGCTGAACAACCATATTCGAACATACGCGC
GTATGATACGGCCGGGCAAAGGGGTTGGGAACGAAAAGCTGTCTTTGTCG
CGTATCCTGACGCTTTTGCTGGTGCGGTTTTAAGTTTTTAAGAAGGAGGG
GACTCTCATACGAGATCATGATCAAAACGCCTCCTTAAGAGTAGAATATT
GAGACCAGGGCGTTTGAAGCTCCAGCACCAGCGTTGCGCGATTCCCAGAC
GACCCCCACCCTCATGACGATGACGATGATAATGTGCTTTCACATTGTTT
AATTTTCCTTATGTTTCGGGTTACTGCTACCGCGCGCCCGGTGTCGCCCT
GCTCTCTTTGCAACCTGCTTCGTTTCGTTCGCCAACCGCCCATAAAACCT
CAGGCTGAAACGCTCAGCGTACTGGTTCCTCGGCGAGTACTGCTGCCAGC
TCACTGGCACCCCTACCGCTGCCGGTTCTCTTCATGACCTGGAACAATCG
CCATCATCACAGACCATCCCTGCCGGCAAAGACTTGCGGGATGTTTTGGC
GCTGTCCAACCCCCATCGCCCGAGGGGGGCATGGGGAAAGGCTGGGAGTC
TGGAGGGCATGGAGACCGGGGCGACGGCTGTGGCGCACCCTGTAGTATCG
GTGATGAACGGGGCCACGGTGTCCATCCTCCTGCGCTTGAAGCACGCGGT
CATGTTTGAGGACTTTCAGGTGTGTTTTCTTGTCGGGAAAGGGAGGCGGT
AGTGTGCCATGCTGAGGGCCGGAAAGGTCGAGAGACCGCGTCGGGTCCGC
GTGCAAAAGGGTTTGTACATGCTAAATATGTTTTTTTGTAATGGTTCTAC
ACACCACAGAGGTACTGTAGTGGACTATTCTATCTGACACTCGCTTTAGC
GATCGCTGATACTCTCAGTAGCTTTTTCTGTCATACCTGTTACTATCTAT
AGCTTTAGCGTATCGTATCTGATACCTCTTGTAGCTTTAGCTATCATACC
GGACACTCTTAATAGCTGTGGCTGATAGGTTGCATAGTAATTCATCAGGT
GGTGCGTGCCTCATGAAGCCTTCGTTCATTTTTTTTGGCTGACCAAAACA
CCACTTTTGTTCGTTTGTTTGTTCGTTTGATTGTCTCCCTTTCCCTTCGC
TCTCACATGTGACGTTTCAACGCTCTTCTCTTTCTTTTCGCGCGATTCCA
GACCCGACACACGTGCGCGTCGGCGCTCTGCAAGATCGCCCTCCGCCTCC
CTGAGCCAGTCCGATTTGACGCGTACTGCTTCCTGAAAGGCCTTGTCGAT
ACTGCCGCCATATTCCCCCTCACTGCGCCTCTCGGAGGTGCTAACGCTAC
TGCAGAGAGCGATTCCGGCCCCGGTGGTGGTGGTGATGATCGTGAAAAAT
TGCTGGCGAGCTACCGACAAGAACAGGAGGCGGTGTTGGAAAGAGTCGAG
ACTGGTGCGTAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11189:478..8489-

>mRNA_M-pyrifera_M_contig11189.2483.1 ID=mRNA_M-pyrifera_M_contig11189.2483.1|Name=mRNA_M-pyrifera_M_contig11189.2483.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=3408bp|location=Sequence derived from alignment at M-pyrifera_M_contig11189:478..8489- (Macrocystis pyrifera P11B4 male)
ATGCAGAGCCAAAACCGAGGCGGTGGTGATGGCGCCGATGGTAGTGTTGG
CGGTTTTAGCATCGCTACAACCGGAAAAGCGAGCGCAACCAGAGGGGCTC
TTGAGGGCGAGCGACCCAGCGCTGGCAAGGCAGGCCCGCGACCACCGTCC
ATATGCATCCGGCAGGGCTTCGCCGAGGCTCTGGCCAAGGCGGGAGGGGG
GGTGGGCGGCGGCGGCGGCGGTAAAATTGACACCACCTCCGGGGACGCTG
GGGGGGGTGGCGCGGGGTTCAACCTTCTTGGGCTCCCCCCGTCTCCGGCC
CCACTGTCTGGGATGCAGAGCCAAAACCGAGGCGGTGGTGATGGCGCCGA
TGGTAGTGTTGGCGGTTTTAGCATCGCTACAACCGGAAAAGCGAGCGCAA
CCAGAGGGGCTCTTGAGGGCGAGCGACCCAGCGCTGGCAAGGCAGGCCCG
CGACCACCGTCCATATGCATCCGGCAGGGCTTCGCCGAGGCTCTGGCCAA
GGCGGGAGGGGGGGTGGGCGGCGGCGGCGGCGGTAAAATTGACACCACCT
CCGGGGACGCTGGGGGGGGTGGCGCGGGGTTCAACCTTCTTGGGCTCCCC
CCGTCTCCGGCCCCACTGTCTGGGGTGGTGGAAGAGCAGAACATCGCGGC
GATCCGAGACCTGTGCCGAGCCTTGCAGCAGCACCGTCTTTTGGAAAGCC
CTCACCTGCATGTGCGCAGCCTAGCTCTCGAGGTGGTGGAAGAGCAGAAC
ATCGCGGCGATCCGAGACCTGTGCCGAGCCTTGCAGCAGCACCGTCTTTT
GGAAAGCCCTCACCTGCATGTGCGCAGCCTAGCTCTCGAGGCGATGTTTC
TATTGGTGCCGGACCCATCCCCACTCGACCCCCAGCTGCGCGGCCTGTGG
GACTGGTTACAGCAAAAGGTGGAGCAGTGTCCGTCCACCCTTCCTGACTC
CGTGCTGAGCGAGCTGGTGGACACGCTGCTCACGCGGGTGCAGTGCAGCG
CCGCGAGCCGGGAGGAAGTCATTCCCATCGCCCTCGCCCTCACCGAGAGC
TTCATGTACCAGGCGATGTTTCTATTGGTGCCGGACCCATCCCCACTCGA
CCCCCAGCTGCGCGGCCTGTGGGACTGGTTACAGCAAAAGGTGGAGCAGT
GTCCGTCCACCCTTCCTGACTCCGTGCTGAGCGAGCTGGTGGACACGCTG
CTCACGCGGGTGCAGTGCAGCGCCGCGAGCCGGGAGGAAGTCATTCCCAT
CGCCCTCGCCCTCACCGAGAGCTTCATGTACCAGGTCCCGAGCGAGGAAA
TGGGACGCTGCGTGCTCCGGGCATGGTGCCAATGCGCGGGGTACGGAGGC
CGGGCGCGAGAGGCCGTGCTGCAGTCGGTGTACAGACTGCTCGACAGGTC
CCGAGCGAGGAAATGGGACGCTGCGTGCTCCGGGCATGGTGCCAATGCGC
GGGGTACGGAGGCCGGGCGCGAGAGGCCGTGCTGCAGTCGGTGTACAGAC
TGCTCGACAGGAACATCGCCCTACCGCCCGAGAGGCTGTTCAACCCGCTC
ATCTCTGCCGCCAGCGATCATGTTAGCACCGGCAGTTCCAAAAAACGGGC
GCCGCGCCATACGAGGGGGGTGCAGAGCGAAGACTGGACGCGGCAGCCGG
GCGAACATCGCCCTACCGCCCGAGAGGCTGTTCAACCCGCTCATCTCTGC
CGCCAGCGATCATGTTAGCACCGGCAGTTCCAAAAAACGGGCGCCGCGCC
ATACGAGGGGGGTGCAGAGCGAAGACTGGACGCGGCAGCCGGGCACAGTT
GCGTCGGGCCCACTCCCTTCCGGTGGCCATCCTGGAGGGAGACCGCTGCT
GACGGTCCCAAGCGGCAGCGGCAGCGGTAGCGGCGGGTTTGTTAGCTTGA
ACGGCGTCTCGATGGTGCTCGGTGGAGAAGAGACGCCCCGCTGGGGCAAG
GCCGGAGGGGGCGAGGGAGGCCCTGATTCGTCTCCGCGGTTGGATTACCT
CAGGGCCAAAAGTGCAGCCACAAGACAGTTGCGTCGGGCCCACTCCCTTC
CGGTGGCCATCCTGGAGGGAGACCGCTGCTGACGGTCCCAAGCGGCAGCG
GCAGCGGTAGCGGCGGGTTTGTTAGCTTGAACGGCGTCTCGATGGTGCTC
GGTGGAGAAGAGACGCCCCGCTGGGGCAAGGCCGGAGGGGGCGAGGGAGG
CCCTGATTCGTCTCCGCGGTTGGATTACCTCAGGGCCAAAAGTGCAGCCA
CAAGGCTGAAACGCTCAGCGTACTGGTTCCTCGGCGAGTACTGCTGCCAG
CTCACTGGCACCCCTACCGCTGCCGGTTCTCTTCATGACCTGGAACAATC
GCCATCATCACAGACCATCCCTGCCGGCAAAGACTTGCGGGATGTTTTGG
CGCTGTCCAACCCCCATCGCCCGAGGGGGGCATGGGGAAAGGCTGGGAGT
CTGGAGGGCATGGAGACCGGGGCGACGGCTGTGGCGCACCCTGTAGTATC
GGTGATGAACGGGGCCACGGTGTCCATCCTCCTGCGCTTGAAGCACGCGG
TCATGTTTGAGGACTTTCAGGCTGAAACGCTCAGCGTACTGGTTCCTCGG
CGAGTACTGCTGCCAGCTCACTGGCACCCCTACCGCTGCCGGTTCTCTTC
ATGACCTGGAACAATCGCCATCATCACAGACCATCCCTGCCGGCAAAGAC
TTGCGGGATGTTTTGGCGCTGTCCAACCCCCATCGCCCGAGGGGGGCATG
GGGAAAGGCTGGGAGTCTGGAGGGCATGGAGACCGGGGCGACGGCTGTGG
CGCACCCTGTAGTATCGGTGATGAACGGGGCCACGGTGTCCATCCTCCTG
CGCTTGAAGCACGCGGTCATGTTTGAGGACTTTCAGACCCGACACACGTG
CGCGTCGGCGCTCTGCAAGATCGCCCTCCGCCTCCCTGAGCCAGTCCGAT
TTGACGCGTACTGCTTCCTGAAAGGCCTTGTCGATACTGCCGCCATATTC
CCCCTCACTGCGCCTCTCGGAGGTGCTAACGCTACTGCAGAGAGCGATTC
CGGCCCCGGTGGTGGTGGTGATGATCGTGAAAAATTGCTGGCGAGCTACC
GACAAGAACAGGAGGCGGTGTTGGAAAGAGTCGAGACTGGTGCGTATACC
CGACACACGTGCGCGTCGGCGCTCTGCAAGATCGCCCTCCGCCTCCCTGA
GCCAGTCCGATTTGACGCGTACTGCTTCCTGAAAGGCCTTGTCGATACTG
CCGCCATATTCCCCCTCACTGCGCCTCTCGGAGGTGCTAACGCTACTGCA
GAGAGCGATTCCGGCCCCGGTGGTGGTGGTGATGATCGTGAAAAATTGCT
GGCGAGCTACCGACAAGAACAGGAGGCGGTGTTGGAAAGAGTCGAGACTG
GTGCGTAT
back to top