mRNA_M-pyrifera_M_contig111843.2478.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111843.2478.1
Unique NamemRNA_M-pyrifera_M_contig111843.2478.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111843.2478.1 vs. uniprot
Match: A0A7C3SVQ1_9BACT (Uncharacterized protein n=1 Tax=Candidatus Hydrogenedentes bacterium TaxID=2030809 RepID=A0A7C3SVQ1_9BACT)

HSP 1 Score: 99.0 bits (245), Expect = 1.130e-21
Identity = 58/150 (38.67%), Postives = 89/150 (59.33%), Query Frame = 1 
Query:   37 WFIPAVYYARQLVLAFSTRTIQSIAAI-EQTEDEIGNPFKQARDLAVHGDIDGAIARYRSYTERTKEARFEAAQLLEAEGRYRDALDFYIEIGDRHRDDIRAWGEAMFRRAKLLDTVFGDGDGARMLYERILDRASHTEFATLASTQLSR 483
            WFIP  YY+   V   +++ ++ I+ I ++ ED   +PF  AR LA+ GDIDGAIA YRSY     EA FE  +LL+++ R+ +A     EI + + D   AW EA + +AK+   +F   + A  LY++IL +   T F T+AS +++R
Sbjct:   82 WFIPMFYYSFFFVNVVTSQIVEQISPIGDKIEDP--SPFANARKLALMGDIDGAIALYRSYKNNQVEALFEIFRLLKSKERHEEAFQTLQEIIENYEDRTSAWIEAKYYQAKIKSAIFKKYNEAIQLYKQILRKRPKTPFHTIASAEIAR 229
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111843.2478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7C3SVQ1_9BACT1.130e-2138.67Uncharacterized protein n=1 Tax=Candidatus Hydroge... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111843contigM-pyrifera_M_contig111843:104..586 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size483
Cds size474
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.837615-CDS-M-pyrifera_M_contig111843:103..5771622815631.837615-CDS-M-pyrifera_M_contig111843:103..577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111843 104..577 -
1692277496.36866-CDS-M-pyrifera_M_contig111843:103..5771692277496.36866-CDS-M-pyrifera_M_contig111843:103..577Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111843 104..577 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.8511903-UTR-M-pyrifera_M_contig111843:577..5861622815631.8511903-UTR-M-pyrifera_M_contig111843:577..586Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111843 578..586 -
1692277496.3792732-UTR-M-pyrifera_M_contig111843:577..5861692277496.3792732-UTR-M-pyrifera_M_contig111843:577..586Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig111843 578..586 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111843.2478.1prot_M-pyrifera_M_contig111843.2478.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111843 104..577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111843.2478.1

>prot_M-pyrifera_M_contig111843.2478.1 ID=prot_M-pyrifera_M_contig111843.2478.1|Name=mRNA_M-pyrifera_M_contig111843.2478.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
MLMLYAAGLWFIPAVYYARQLVLAFSTRTIQSIAAIEQTEDEIGNPFKQA
RDLAVHGDIDGAIARYRSYTERTKEARFEAAQLLEAEGRYRDALDFYIEI
GDRHRDDIRAWGEAMFRRAKLLDTVFGDGDGARMLYERILDRASHTEFAT
LASTQLSR
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mRNA from alignment at M-pyrifera_M_contig111843:104..586-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111843.2478.1 ID=mRNA_M-pyrifera_M_contig111843.2478.1|Name=mRNA_M-pyrifera_M_contig111843.2478.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=483bp|location=Sequence derived from alignment at M-pyrifera_M_contig111843:104..586- (Macrocystis pyrifera P11B4 male)
CGAACCCTCATGCTCATGCTTTACGCTGCGGGACTCTGGTTCATACCCGC
CGTCTACTACGCACGACAGCTCGTCCTCGCATTTAGCACTCGGACGATTC
AATCGATCGCAGCAATCGAACAAACGGAAGATGAAATAGGCAACCCATTC
AAGCAAGCGCGCGACCTGGCCGTACACGGTGATATCGACGGCGCCATCGC
TCGTTACCGCAGTTACACTGAACGGACTAAAGAAGCTCGATTCGAAGCCG
CGCAACTCCTCGAAGCCGAGGGGCGCTATAGAGATGCACTAGACTTCTAC
ATCGAAATTGGCGACCGCCACCGCGACGATATCCGCGCGTGGGGCGAAGC
CATGTTCCGACGCGCCAAACTCCTCGATACGGTATTCGGCGACGGTGACG
GCGCGCGCATGCTCTACGAACGCATCCTCGACCGAGCGTCCCACACGGAA
TTCGCAACGCTCGCCTCGACGCAACTATCACGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111843:104..586-

>mRNA_M-pyrifera_M_contig111843.2478.1 ID=mRNA_M-pyrifera_M_contig111843.2478.1|Name=mRNA_M-pyrifera_M_contig111843.2478.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig111843:104..586- (Macrocystis pyrifera P11B4 male)
ATGCTCATGCTTTACGCTGCGGGACTCTGGTTCATACCCGCCGTCTACTA
CGCACGACAGCTCGTCCTCGCATTTAGCACTCGGACGATTCAATCGATCG
CAGCAATCGAACAAACGGAAGATGAAATAGGCAACCCATTCAAGCAAGCG
CGCGACCTGGCCGTACACGGTGATATCGACGGCGCCATCGCTCGTTACCG
CAGTTACACTGAACGGACTAAAGAAGCTCGATTCGAAGCCGCGCAACTCC
TCGAAGCCGAGGGGCGCTATAGAGATGCACTAGACTTCTACATCGAAATT
GGCGACCGCCACCGCGACGATATCCGCGCGTGGGGCGAAGCCATGTTCCG
ACGCGCCAAACTCCTCGATACGGTATTCGGCGACGGTGACGGCGCGCGCA
TGCTCTACGAACGCATCCTCGACCGAGCGTCCCACACGGAATTCGCAACG
CTCGCCTCGACGCAACTATCACGGATGCTCATGCTTTACGCTGCGGGACT
CTGGTTCATACCCGCCGTCTACTACGCACGACAGCTCGTCCTCGCATTTA
GCACTCGGACGATTCAATCGATCGCAGCAATCGAACAAACGGAAGATGAA
ATAGGCAACCCATTCAAGCAAGCGCGCGACCTGGCCGTACACGGTGATAT
CGACGGCGCCATCGCTCGTTACCGCAGTTACACTGAACGGACTAAAGAAG
CTCGATTCGAAGCCGCGCAACTCCTCGAAGCCGAGGGGCGCTATAGAGAT
GCACTAGACTTCTACATCGAAATTGGCGACCGCCACCGCGACGATATCCG
CGCGTGGGGCGAAGCCATGTTCCGACGCGCCAAACTCCTCGATACGGTAT
TCGGCGACGGTGACGGCGCGCGCATGCTCTACGAACGCATCCTCGACCGA
GCGTCCCACACGGAATTCGCAACGCTCGCCTCGACGCAACTATCACGG
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