mRNA_M-pyrifera_M_contig111830.2473.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111830.2473.1
Unique NamemRNA_M-pyrifera_M_contig111830.2473.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig111830.2473.1 vs. uniprot
Match: L7N0U5_CIOIN (Uncharacterized protein n=2 Tax=Ciona intestinalis TaxID=7719 RepID=L7N0U5_CIOIN)

HSP 1 Score: 68.9 bits (167), Expect = 9.990e-11
Identity = 42/108 (38.89%), Postives = 63/108 (58.33%), Query Frame = 1 
Query:  139 SILFSALALVPVGWVQVLTFIALSGFRAFHFSVQSTILAERFGFKNFGLHIGIITMFGGLLALLQFPLLVAITNS-GGDFTVTNSIILALSVLSAAFPAWYYWKRSSE 459
            +ILFS + LVPV  +Q L+F+    FR+F +   +  L   F  ++FG    I   FG ++ALLQ+PL +A+TN  GGDFT  N  +L +SV +   P   Y +R+ +
Sbjct:  364 AILFSIMVLVPVLRLQYLSFLLQVVFRSFLYGGNAAFLLTTFPSEHFGKVYSITVTFGSIIALLQYPLFLAVTNIYGGDFTAINLALLVISVATIVHPIVLYDERNCQ 471
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111830.2473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
L7N0U5_CIOIN9.990e-1138.89Uncharacterized protein n=2 Tax=Ciona intestinalis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111830contigM-pyrifera_M_contig111830:93..557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue8.2e-15
Seed eggNOG ortholog65071.PYU1_T004068
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Pc14g00410 protein. Source PGD
EggNOG OGs1MEKP@121069,2CMU1@1,2QRYG@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Exons1
Model size465
Cds size465
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.643101-CDS-M-pyrifera_M_contig111830:92..5571622815631.643101-CDS-M-pyrifera_M_contig111830:92..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111830 93..557 -
1692277496.2886467-CDS-M-pyrifera_M_contig111830:92..5571692277496.2886467-CDS-M-pyrifera_M_contig111830:92..557Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111830 93..557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111830.2473.1prot_M-pyrifera_M_contig111830.2473.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111830 93..557 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111830.2473.1

>prot_M-pyrifera_M_contig111830.2473.1 ID=prot_M-pyrifera_M_contig111830.2473.1|Name=mRNA_M-pyrifera_M_contig111830.2473.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=155bp
GDVAEVEQWLSILSIILPLGALWQGAVGQIIDKRGLEIAIFVLVAFSILF
SALALVPVGWVQVLTFIALSGFRAFHFSVQSTILAERFGFKNFGLHIGII
TMFGGLLALLQFPLLVAITNSGGDFTVTNSIILALSVLSAAFPAWYYWKR
SSEKQ
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mRNA from alignment at M-pyrifera_M_contig111830:93..557-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111830.2473.1 ID=mRNA_M-pyrifera_M_contig111830.2473.1|Name=mRNA_M-pyrifera_M_contig111830.2473.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=465bp|location=Sequence derived from alignment at M-pyrifera_M_contig111830:93..557- (Macrocystis pyrifera P11B4 male)
GGAGATGTCGCTGAAGTTGAACAGTGGCTCTCCATCCTCTCCATCATCCT
CCCTCTTGGAGCATTGTGGCAAGGAGCGGTTGGCCAAATCATTGACAAGC
GAGGTCTTGAGATTGCTATTTTTGTCTTGGTTGCCTTTTCCATCCTCTTC
TCTGCACTCGCTCTTGTTCCAGTGGGTTGGGTGCAAGTACTCACATTCAT
TGCACTCTCTGGTTTCCGCGCCTTCCACTTTTCAGTCCAATCCACCATCC
TTGCAGAGCGATTTGGGTTCAAAAACTTTGGCCTCCACATTGGCATCATC
ACCATGTTTGGTGGCCTTCTTGCCCTCCTTCAGTTTCCCCTCCTTGTTGC
AATCACCAACAGTGGAGGTGACTTTACAGTGACAAACTCTATCATCCTTG
CCCTCTCTGTCCTCTCCGCAGCATTCCCAGCATGGTACTACTGGAAACGC
TCAAGTGAAAAGCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111830:93..557-

>mRNA_M-pyrifera_M_contig111830.2473.1 ID=mRNA_M-pyrifera_M_contig111830.2473.1|Name=mRNA_M-pyrifera_M_contig111830.2473.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=930bp|location=Sequence derived from alignment at M-pyrifera_M_contig111830:93..557- (Macrocystis pyrifera P11B4 male)
GGAGATGTCGCTGAAGTTGAACAGTGGCTCTCCATCCTCTCCATCATCCT
CCCTCTTGGAGCATTGTGGCAAGGAGCGGTTGGCCAAATCATTGACAAGC
GAGGTCTTGAGATTGCTATTTTTGTCTTGGTTGCCTTTTCCATCCTCTTC
TCTGCACTCGCTCTTGTTCCAGTGGGTTGGGTGCAAGTACTCACATTCAT
TGCACTCTCTGGTTTCCGCGCCTTCCACTTTTCAGTCCAATCCACCATCC
TTGCAGAGCGATTTGGGTTCAAAAACTTTGGCCTCCACATTGGCATCATC
ACCATGTTTGGTGGCCTTCTTGCCCTCCTTCAGTTTCCCCTCCTTGTTGC
AATCACCAACAGTGGAGGTGACTTTACAGTGACAAACTCTATCATCCTTG
CCCTCTCTGTCCTCTCCGCAGCATTCCCAGCATGGTACTACTGGAAACGC
TCAAGTGAAAAGCAGGGAGATGTCGCTGAAGTTGAACAGTGGCTCTCCAT
CCTCTCCATCATCCTCCCTCTTGGAGCATTGTGGCAAGGAGCGGTTGGCC
AAATCATTGACAAGCGAGGTCTTGAGATTGCTATTTTTGTCTTGGTTGCC
TTTTCCATCCTCTTCTCTGCACTCGCTCTTGTTCCAGTGGGTTGGGTGCA
AGTACTCACATTCATTGCACTCTCTGGTTTCCGCGCCTTCCACTTTTCAG
TCCAATCCACCATCCTTGCAGAGCGATTTGGGTTCAAAAACTTTGGCCTC
CACATTGGCATCATCACCATGTTTGGTGGCCTTCTTGCCCTCCTTCAGTT
TCCCCTCCTTGTTGCAATCACCAACAGTGGAGGTGACTTTACAGTGACAA
ACTCTATCATCCTTGCCCTCTCTGTCCTCTCCGCAGCATTCCCAGCATGG
TACTACTGGAAACGCTCAAGTGAAAAGCAG
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