mRNA_M-pyrifera_M_contig111823.2472.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111823.2472.1
Unique NamemRNA_M-pyrifera_M_contig111823.2472.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111823.2472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111823contigM-pyrifera_M_contig111823:34..366 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.6090772-CDS-M-pyrifera_M_contig111823:33..3661622815631.6090772-CDS-M-pyrifera_M_contig111823:33..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111823 34..366 -
1692277496.279559-CDS-M-pyrifera_M_contig111823:33..3661692277496.279559-CDS-M-pyrifera_M_contig111823:33..366Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111823 34..366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111823.2472.1prot_M-pyrifera_M_contig111823.2472.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111823 34..366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111823.2472.1

>prot_M-pyrifera_M_contig111823.2472.1 ID=prot_M-pyrifera_M_contig111823.2472.1|Name=mRNA_M-pyrifera_M_contig111823.2472.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
GTLWVSGGWDNASTPQNGIVTYDSEQNYWSRWGSLLQSRGHHCMVAVGDV
VVVAGGVEEFGSTTAPIPSTEVLHAGSGPHVPVQGEDMITPRIQMGCAAM
NGLVWAAGGTD
back to top

mRNA from alignment at M-pyrifera_M_contig111823:34..366-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111823.2472.1 ID=mRNA_M-pyrifera_M_contig111823.2472.1|Name=mRNA_M-pyrifera_M_contig111823.2472.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig111823:34..366- (Macrocystis pyrifera P11B4 male)
GGCACCTTGTGGGTTTCAGGTGGTTGGGATAATGCCTCAACACCTCAGAA
TGGGATCGTTACTTATGATTCCGAACAAAACTATTGGTCAAGATGGGGAA
GTTTGCTGCAATCACGAGGACATCATTGTATGGTTGCAGTAGGAGATGTT
GTGGTTGTTGCTGGTGGTGTTGAGGAGTTTGGAAGCACCACAGCACCAAT
TCCATCAACAGAAGTATTGCATGCAGGAAGTGGACCACATGTACCAGTGC
AAGGTGAAGACATGATCACTCCTCGTATCCAAATGGGTTGTGCAGCGATG
AATGGACTCGTATGGGCAGCAGGAGGAACAGAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig111823:34..366-

>mRNA_M-pyrifera_M_contig111823.2472.1 ID=mRNA_M-pyrifera_M_contig111823.2472.1|Name=mRNA_M-pyrifera_M_contig111823.2472.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig111823:34..366- (Macrocystis pyrifera P11B4 male)
GGCACCTTGTGGGTTTCAGGTGGTTGGGATAATGCCTCAACACCTCAGAA
TGGGATCGTTACTTATGATTCCGAACAAAACTATTGGTCAAGATGGGGAA
GTTTGCTGCAATCACGAGGACATCATTGTATGGTTGCAGTAGGAGATGTT
GTGGTTGTTGCTGGTGGTGTTGAGGAGTTTGGAAGCACCACAGCACCAAT
TCCATCAACAGAAGTATTGCATGCAGGAAGTGGACCACATGTACCAGTGC
AAGGTGAAGACATGATCACTCCTCGTATCCAAATGGGTTGTGCAGCGATG
AATGGACTCGTATGGGCAGCAGGAGGAACAGATGGCACCTTGTGGGTTTC
AGGTGGTTGGGATAATGCCTCAACACCTCAGAATGGGATCGTTACTTATG
ATTCCGAACAAAACTATTGGTCAAGATGGGGAAGTTTGCTGCAATCACGA
GGACATCATTGTATGGTTGCAGTAGGAGATGTTGTGGTTGTTGCTGGTGG
TGTTGAGGAGTTTGGAAGCACCACAGCACCAATTCCATCAACAGAAGTAT
TGCATGCAGGAAGTGGACCACATGTACCAGTGCAAGGTGAAGACATGATC
ACTCCTCGTATCCAAATGGGTTGTGCAGCGATGAATGGACTCGTATGGGC
AGCAGGAGGAACAGAT
back to top