mRNA_M-pyrifera_M_contig111813.2469.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111813.2469.1
Unique NamemRNA_M-pyrifera_M_contig111813.2469.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig111813.2469.1 vs. uniprot
Match: A0A5A8DMK8_CAFRO (Uncharacterized protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DMK8_CAFRO)

HSP 1 Score: 50.1 bits (118), Expect = 2.030e-5
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1 
Query:   55 GELGSQSRQHVVGRAHDDDT-MAKTDLDDDTS-NPVRLYYLDEFGNPQTKKEAFRDLSRQLHGKASSRKRQEAALQR 279
            G   +  R   VGRA+D+ T +++ ++ +     P RL Y D+FG  QTK EA+R LS ++HG+  S +RQE  L+R
Sbjct:   13 GTAPTSKRDAQVGRANDERTDLSEYEVTEGNGFAPFRLEYRDQFGQNQTKSEAYRTLSYRVHGRGPSNRRQEKVLRR 89
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111813.2469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A5A8DMK8_CAFRO2.030e-540.26Uncharacterized protein n=2 Tax=Cafeteria roenberg... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111813contigM-pyrifera_M_contig111813:61..393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.4893074-CDS-M-pyrifera_M_contig111813:60..3931622815631.4893074-CDS-M-pyrifera_M_contig111813:60..393Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111813 61..393 +
1692277496.2340467-CDS-M-pyrifera_M_contig111813:60..3931692277496.2340467-CDS-M-pyrifera_M_contig111813:60..393Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111813 61..393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111813.2469.1prot_M-pyrifera_M_contig111813.2469.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111813 61..393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111813.2469.1

>prot_M-pyrifera_M_contig111813.2469.1 ID=prot_M-pyrifera_M_contig111813.2469.1|Name=mRNA_M-pyrifera_M_contig111813.2469.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
MHAASRSSAGMLAVFRQRGELGSQSRQHVVGRAHDDDTMAKTDLDDDTSN
PVRLYYLDEFGNPQTKKEAFRDLSRQLHGKASSRKRQEAALQRQLQLQKE
RKARHGAGAMK
back to top

mRNA from alignment at M-pyrifera_M_contig111813:61..393+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111813.2469.1 ID=mRNA_M-pyrifera_M_contig111813.2469.1|Name=mRNA_M-pyrifera_M_contig111813.2469.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig111813:61..393+ (Macrocystis pyrifera P11B4 male)
ATGCATGCTGCTTCTCGAAGTTCTGCTGGAATGTTGGCGGTGTTTCGGCA
ACGGGGTGAATTGGGGAGTCAATCAAGACAGCATGTGGTGGGAAGAGCGC
ATGATGATGACACGATGGCCAAGACTGATTTGGATGATGACACTTCCAAC
CCCGTTCGACTCTATTATCTCGATGAATTTGGAAACCCCCAAACCAAGAA
GGAAGCCTTTCGTGATCTCAGCAGACAACTCCACGGGAAAGCCAGTAGCA
GAAAGAGACAAGAAGCCGCATTGCAACGACAACTACAGCTCCAGAAAGAG
AGAAAAGCCAGACACGGCGCTGGGGCCATGAAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig111813:61..393+

>mRNA_M-pyrifera_M_contig111813.2469.1 ID=mRNA_M-pyrifera_M_contig111813.2469.1|Name=mRNA_M-pyrifera_M_contig111813.2469.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig111813:61..393+ (Macrocystis pyrifera P11B4 male)
ATGCATGCTGCTTCTCGAAGTTCTGCTGGAATGTTGGCGGTGTTTCGGCA
ACGGGGTGAATTGGGGAGTCAATCAAGACAGCATGTGGTGGGAAGAGCGC
ATGATGATGACACGATGGCCAAGACTGATTTGGATGATGACACTTCCAAC
CCCGTTCGACTCTATTATCTCGATGAATTTGGAAACCCCCAAACCAAGAA
GGAAGCCTTTCGTGATCTCAGCAGACAACTCCACGGGAAAGCCAGTAGCA
GAAAGAGACAAGAAGCCGCATTGCAACGACAACTACAGCTCCAGAAAGAG
AGAAAAGCCAGACACGGCGCTGGGGCCATGAAAATGCATGCTGCTTCTCG
AAGTTCTGCTGGAATGTTGGCGGTGTTTCGGCAACGGGGTGAATTGGGGA
GTCAATCAAGACAGCATGTGGTGGGAAGAGCGCATGATGATGACACGATG
GCCAAGACTGATTTGGATGATGACACTTCCAACCCCGTTCGACTCTATTA
TCTCGATGAATTTGGAAACCCCCAAACCAAGAAGGAAGCCTTTCGTGATC
TCAGCAGACAACTCCACGGGAAAGCCAGTAGCAGAAAGAGACAAGAAGCC
GCATTGCAACGACAACTACAGCTCCAGAAAGAGAGAAAAGCCAGACACGG
CGCTGGGGCCATGAAA
back to top