mRNA_M-pyrifera_M_contig111810.2468.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111810.2468.1
Unique NamemRNA_M-pyrifera_M_contig111810.2468.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: A0A3D5DG42_9GAMM (MATE family efflux transporter n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DG42_9GAMM)

HSP 1 Score: 167 bits (424), Expect = 6.790e-48
Identity = 76/123 (61.79%), Postives = 94/123 (76.42%), Query Frame = 1
Query:    1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRGGFV 369
            WS +FA LF   YA  G +LI  LTDL  +RA AD +LVWA ++P++SVWCFVFDGIFIGAT G +MRNSM+ ++  VF+P W +LQ  GNHGLW AF++FFAARG SM WYF +I+RR GFV
Sbjct:  298 WSIIFAALFVGLYAFFGSSLIALLTDLPELRAEADRFLVWAIIAPIVSVWCFVFDGIFIGATKGREMRNSMVFSTFFVFLPGWYLLQPLGNHGLWLAFLMFFAARGASMAWYFFKIERRDGFV 420          
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: A0A523P3A7_9PROT (MATE family efflux transporter n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P3A7_9PROT)

HSP 1 Score: 158 bits (400), Expect = 5.230e-44
Identity = 73/122 (59.84%), Postives = 90/122 (73.77%), Query Frame = 1
Query:    1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRGGF 366
            WS  FA++F   Y + G  LI  LT++  VR  A  YL+WA V PL+SVWCFVFDGIFIGAT G +MRNSM+ ++  VF+PAW VL  +GNHGLW AF+LFFAARGVSMGWY+ +ID +  F
Sbjct:  317 WSVFFALVFAGLYGVFGTLLITLLTNIAEVRLVAGQYLIWAIVLPLVSVWCFVFDGIFIGATKGPEMRNSMIFSAFAVFLPAWYVLHPWGNHGLWLAFLLFFAARGVSMGWYYTKIDWQRNF 438          
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: A0A661BV64_9GAMM (MATE family efflux transporter n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661BV64_9GAMM)

HSP 1 Score: 155 bits (392), Expect = 5.990e-43
Identity = 70/126 (55.56%), Postives = 97/126 (76.98%), Query Frame = 1
Query:    1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRGGFVPAE 378
            WS V AI F L +AL+G+++IN LTD+ S+RA A  YL W  +SP+++VWCF+ DGIFIGAT   +MRNSMLI++  +F+PAW V Q +GNHGLW AF++FF ARG+++ +  LRI+R GGF+P +
Sbjct:  320 WSFVVAISFALIFALVGKSMINILTDILSIRAEAYQYLPWMILSPIVAVWCFLLDGIFIGATRAKEMRNSMLISTFLIFLPAWYVFQGYGNHGLWLAFIVFFVARGLTLAYASLRIERDGGFIPIK 445          
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: A0A849MJS5_9PROT (MATE family efflux transporter n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A849MJS5_9PROT)

HSP 1 Score: 149 bits (377), Expect = 9.510e-41
Identity = 71/127 (55.91%), Postives = 88/127 (69.29%), Query Frame = 1
Query:    1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRGGFVPAEL 381
            WS  F + FTL Y L G+ +I  LTD++SVR  A  YL W  + PLISVWCF+FDGIFIGAT G +MRN+ML+ +   F+P W V Q +GNHGLW AF LF A RGVS+G Y+ RI+   GFV  E+
Sbjct:  316 WSFAFGLCFTLFYWLAGKGMIYLLTDIESVREIALVYLPWMIILPLISVWCFLFDGIFIGATRGKEMRNAMLVCTFVFFLPLWYVFQFWGNHGLWLAFTLFIAIRGVSLGLYYFRIENTDGFVVGEV 442          
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: A0A836TJ69_9GAMM (MATE family efflux transporter n=1 Tax=Thiotrichaceae bacterium TaxID=2030882 RepID=A0A836TJ69_9GAMM)

HSP 1 Score: 145 bits (367), Expect = 2.670e-39
Identity = 70/123 (56.91%), Postives = 86/123 (69.92%), Query Frame = 1
Query:    1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRGGFV 369
            WS VF + FTL Y L+G+ +IN LT+++ VR  A  YL W  V PLISVWCF+ DGIFIGAT G +MRNSMLI +   F+P W V Q  GNHGLW AF LF A RGV++G Y+  I+R  GF+
Sbjct:  320 WSFVFGMCFTLFYWLLGEGMINLLTNIEPVREVALLYLPWMVVLPLISVWCFLLDGIFIGATRGPEMRNSMLICTFVFFLPLWYVFQYLGNHGLWLAFTLFIAIRGVTLGIYYYLIERNQGFI 442          
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: A0A3B0YTY5_9ZZZZ (DNA-damage-inducible protein F n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0YTY5_9ZZZZ)

HSP 1 Score: 142 bits (359), Expect = 3.760e-38
Identity = 67/120 (55.83%), Postives = 90/120 (75.00%), Query Frame = 1
Query:    1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRG 360
            WS  FA+LF   YA  G  +I  L+D+D+VR AA+ YL+W+   PL++VW ++FDGIFIGAT   +MRN+ML++++ VF+PAW +LQ +GNHGLWAA MLF AARGV+M W F  + RRG
Sbjct:  318 WSLGFALLFVGLYAFAGPWMIMQLSDIDAVREAAEEYLIWSIFMPLVAVWGYLFDGIFIGATRAREMRNTMLLSTLLVFLPAWWLLQPWGNHGLWAALMLFMAARGVTMAWSFRLLVRRG 437          
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: A0A2P7QXW9_9GAMM (MATE family efflux transporter DinF n=2 Tax=Zobellella taiwanensis TaxID=347535 RepID=A0A2P7QXW9_9GAMM)

HSP 1 Score: 139 bits (351), Expect = 6.640e-37
Identity = 62/125 (49.60%), Postives = 84/125 (67.20%), Query Frame = 1
Query:    1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRGGFVPA 375
            W  V A+LF L +AL G+A+I  +T +D VR  A  YL W    PL++ WCF+ DGIFIG T G +MR+ MLI+++GVF P W + Q  GNHGLW A + F AARG+++GW + R+D +G F  A
Sbjct:  322 WGAVVAVLFALLFALAGEAMIVRITSIDVVREQAFRYLPWLVAMPLVACWCFILDGIFIGTTRGREMRDMMLISTLGVFFPVWWLAQPLGNHGLWLAMLCFMAARGLTLGWAWWRLDGKGHFYRA 446          
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: A0A235CG73_9GAMM (MATE family efflux transporter DinF n=3 Tax=Oceanimonas baumannii TaxID=129578 RepID=A0A235CG73_9GAMM)

HSP 1 Score: 138 bits (348), Expect = 1.730e-36
Identity = 61/125 (48.80%), Postives = 85/125 (68.00%), Query Frame = 1
Query:    1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRGGFVPA 375
            W G+ A+LFTL + L G+ L++ +T + SVR  A  +L W    PL+S WCFV DGIFIGAT G  MRN ML++++GVF P W + Q+ GNH LW A + F AARG+++ W + ++D R  FVP+
Sbjct:  323 WGGLVAVLFTLVFWLAGKQLVDQITSIYSVRQQAYGFLPWLVAMPLVSCWCFVLDGIFIGATQGRAMRNMMLLSALGVFFPVWWLSQSMGNHALWLAMLCFMAARGLTLAWAWWQLDERCAFVPS 447          
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: UPI001FE05B8A (MATE family efflux transporter DinF n=1 Tax=Oceanimonas smirnovii TaxID=264574 RepID=UPI001FE05B8A)

HSP 1 Score: 138 bits (347), Expect = 1.930e-36
Identity = 61/127 (48.03%), Postives = 86/127 (67.72%), Query Frame = 1
Query:    1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRGGFVPAEL 381
            W  + A+LFTL + L G+ L+  +T ++SV+  A  +L W    PL+S WCFV DGIFIGAT G  MRN ML++++GVF P W + Q+ GNH LW A + F AARG+++GW + ++D+R  FVP  L
Sbjct:  305 WGLLVAVLFTLVFWLAGKPLVGQITSIESVQQQAYGFLPWLVAMPLVSCWCFVLDGIFIGATQGRAMRNMMLVSTLGVFFPVWWLSQSLGNHALWLAMLCFMAARGLTLGWAWWQLDQRRAFVPDGL 431          
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: A0A523LFN4_9GAMM (MATE family efflux transporter DinF n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523LFN4_9GAMM)

HSP 1 Score: 138 bits (347), Expect = 2.530e-36
Identity = 64/122 (52.46%), Postives = 88/122 (72.13%), Query Frame = 1
Query:    1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRGGF 366
            W+   A+LF+L YA++G  +I+ +TD+D VRA A  YL W  VSPLISVW F+ DG+FIGAT G +MRN+ML++ +  ++PAW +LQ  GNHGLW A M+F AAR ++MGW + R+ R   F
Sbjct:  322 WAAGVALLFSLIYAVVGGLIIDLITDIDRVRAMARIYLPWIIVSPLISVWSFLLDGVFIGATRGREMRNTMLVSVLVFYLPAWYLLQPLGNHGLWMALMVFMAARALTMGWSWRRLLRTDAF 443          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3D5DG42_9GAMM6.790e-4861.79MATE family efflux transporter n=1 Tax=Gammaproteo... [more]
A0A523P3A7_9PROT5.230e-4459.84MATE family efflux transporter n=2 Tax=Proteobacte... [more]
A0A661BV64_9GAMM5.990e-4355.56MATE family efflux transporter n=2 Tax=Gammaproteo... [more]
A0A849MJS5_9PROT9.510e-4155.91MATE family efflux transporter n=1 Tax=Proteobacte... [more]
A0A836TJ69_9GAMM2.670e-3956.91MATE family efflux transporter n=1 Tax=Thiotrichac... [more]
A0A3B0YTY5_9ZZZZ3.760e-3855.83DNA-damage-inducible protein F n=1 Tax=hydrotherma... [more]
A0A2P7QXW9_9GAMM6.640e-3749.60MATE family efflux transporter DinF n=2 Tax=Zobell... [more]
A0A235CG73_9GAMM1.730e-3648.80MATE family efflux transporter DinF n=3 Tax=Oceani... [more]
UPI001FE05B8A1.930e-3648.03MATE family efflux transporter DinF n=1 Tax=Oceani... [more]
A0A523LFN4_9GAMM2.530e-3652.46MATE family efflux transporter DinF n=1 Tax=Gammap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111810contigM-pyrifera_M_contig111810:199..585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score136.7
Seed ortholog evalue7.5e-30
Seed eggNOG ortholog1279015.KB908459_gene2788
Preferred namedinF
KEGG koko:K03327
KEGG TC2.A.66.1
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
EggNOG free text desc.MatE
EggNOG OGs1MV6B@1224,1RPGF@1236,1Y57E@135624,COG0534@1,COG0534@2
COG Functional cat.V
Best tax levelAeromonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size387
Cds size387
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.4497795-CDS-M-pyrifera_M_contig111810:198..5851622815631.4497795-CDS-M-pyrifera_M_contig111810:198..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111810 199..585 -
1692277496.2227554-CDS-M-pyrifera_M_contig111810:198..5851692277496.2227554-CDS-M-pyrifera_M_contig111810:198..585Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111810 199..585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111810.2468.1prot_M-pyrifera_M_contig111810.2468.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111810 199..585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111810.2468.1

>prot_M-pyrifera_M_contig111810.2468.1 ID=prot_M-pyrifera_M_contig111810.2468.1|Name=mRNA_M-pyrifera_M_contig111810.2468.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp
WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVW
CFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFML
FFAARGVSMGWYFLRIDRRGGFVPAELH*
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mRNA from alignment at M-pyrifera_M_contig111810:199..585-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111810.2468.1 ID=mRNA_M-pyrifera_M_contig111810.2468.1|Name=mRNA_M-pyrifera_M_contig111810.2468.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig111810:199..585- (Macrocystis pyrifera P11B4 male)
TGGTCCGGCGTGTTTGCGATTTTGTTTACGCTCGCTTACGCCTTGATGGG ACAGGCGCTGATCAACACGCTGACGGATCTCGACAGCGTCCGGGCCGCGG CCGACAGCTACCTTGTCTGGGCCGCGGTCTCGCCATTGATATCGGTATGG TGTTTCGTTTTCGATGGCATTTTCATCGGCGCGACGCTCGGCGCACAAAT GCGTAATTCGATGCTAATCGCGAGCGTGGGCGTCTTCGTACCCGCCTGGA CCGTGCTGCAAACGTTCGGTAACCACGGCTTGTGGGCCGCGTTCATGCTG TTCTTCGCCGCCCGAGGGGTGTCCATGGGGTGGTATTTCTTGCGCATCGA TCGGCGCGGTGGTTTCGTGCCGGCCGAACTACACTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111810:199..585-

>mRNA_M-pyrifera_M_contig111810.2468.1 ID=mRNA_M-pyrifera_M_contig111810.2468.1|Name=mRNA_M-pyrifera_M_contig111810.2468.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig111810:199..585- (Macrocystis pyrifera P11B4 male)
TGGTCCGGCGTGTTTGCGATTTTGTTTACGCTCGCTTACGCCTTGATGGG
ACAGGCGCTGATCAACACGCTGACGGATCTCGACAGCGTCCGGGCCGCGG
CCGACAGCTACCTTGTCTGGGCCGCGGTCTCGCCATTGATATCGGTATGG
TGTTTCGTTTTCGATGGCATTTTCATCGGCGCGACGCTCGGCGCACAAAT
GCGTAATTCGATGCTAATCGCGAGCGTGGGCGTCTTCGTACCCGCCTGGA
CCGTGCTGCAAACGTTCGGTAACCACGGCTTGTGGGCCGCGTTCATGCTG
TTCTTCGCCGCCCGAGGGGTGTCCATGGGGTGGTATTTCTTGCGCATCGA
TCGGCGCGGTGGTTTCGTGCCGGCCGAACTACACTGATGGTCCGGCGTGT
TTGCGATTTTGTTTACGCTCGCTTACGCCTTGATGGGACAGGCGCTGATC
AACACGCTGACGGATCTCGACAGCGTCCGGGCCGCGGCCGACAGCTACCT
TGTCTGGGCCGCGGTCTCGCCATTGATATCGGTATGGTGTTTCGTTTTCG
ATGGCATTTTCATCGGCGCGACGCTCGGCGCACAAATGCGTAATTCGATG
CTAATCGCGAGCGTGGGCGTCTTCGTACCCGCCTGGACCGTGCTGCAAAC
GTTCGGTAACCACGGCTTGTGGGCCGCGTTCATGCTGTTCTTCGCCGCCC
GAGGGGTGTCCATGGGGTGGTATTTCTTGCGCATCGATCGGCGCGGTGGT
TTCGTGCCGGCCGAACTACACTGA
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