mRNA_M-pyrifera_M_contig111810.2468.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: A0A3D5DG42_9GAMM (MATE family efflux transporter n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DG42_9GAMM) HSP 1 Score: 167 bits (424), Expect = 6.790e-48 Identity = 76/123 (61.79%), Postives = 94/123 (76.42%), Query Frame = 1
Query: 1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRGGFV 369
WS +FA LF YA G +LI LTDL +RA AD +LVWA ++P++SVWCFVFDGIFIGAT G +MRNSM+ ++ VF+P W +LQ GNHGLW AF++FFAARG SM WYF +I+RR GFV
Sbjct: 298 WSIIFAALFVGLYAFFGSSLIALLTDLPELRAEADRFLVWAIIAPIVSVWCFVFDGIFIGATKGREMRNSMVFSTFFVFLPGWYLLQPLGNHGLWLAFLMFFAARGASMAWYFFKIERRDGFV 420
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: A0A523P3A7_9PROT (MATE family efflux transporter n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523P3A7_9PROT) HSP 1 Score: 158 bits (400), Expect = 5.230e-44 Identity = 73/122 (59.84%), Postives = 90/122 (73.77%), Query Frame = 1
Query: 1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRGGF 366
WS FA++F Y + G LI LT++ VR A YL+WA V PL+SVWCFVFDGIFIGAT G +MRNSM+ ++ VF+PAW VL +GNHGLW AF+LFFAARGVSMGWY+ +ID + F
Sbjct: 317 WSVFFALVFAGLYGVFGTLLITLLTNIAEVRLVAGQYLIWAIVLPLVSVWCFVFDGIFIGATKGPEMRNSMIFSAFAVFLPAWYVLHPWGNHGLWLAFLLFFAARGVSMGWYYTKIDWQRNF 438
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: A0A661BV64_9GAMM (MATE family efflux transporter n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661BV64_9GAMM) HSP 1 Score: 155 bits (392), Expect = 5.990e-43 Identity = 70/126 (55.56%), Postives = 97/126 (76.98%), Query Frame = 1
Query: 1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRGGFVPAE 378
WS V AI F L +AL+G+++IN LTD+ S+RA A YL W +SP+++VWCF+ DGIFIGAT +MRNSMLI++ +F+PAW V Q +GNHGLW AF++FF ARG+++ + LRI+R GGF+P +
Sbjct: 320 WSFVVAISFALIFALVGKSMINILTDILSIRAEAYQYLPWMILSPIVAVWCFLLDGIFIGATRAKEMRNSMLISTFLIFLPAWYVFQGYGNHGLWLAFIVFFVARGLTLAYASLRIERDGGFIPIK 445
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: A0A849MJS5_9PROT (MATE family efflux transporter n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A849MJS5_9PROT) HSP 1 Score: 149 bits (377), Expect = 9.510e-41 Identity = 71/127 (55.91%), Postives = 88/127 (69.29%), Query Frame = 1
Query: 1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRGGFVPAEL 381
WS F + FTL Y L G+ +I LTD++SVR A YL W + PLISVWCF+FDGIFIGAT G +MRN+ML+ + F+P W V Q +GNHGLW AF LF A RGVS+G Y+ RI+ GFV E+
Sbjct: 316 WSFAFGLCFTLFYWLAGKGMIYLLTDIESVREIALVYLPWMIILPLISVWCFLFDGIFIGATRGKEMRNAMLVCTFVFFLPLWYVFQFWGNHGLWLAFTLFIAIRGVSLGLYYFRIENTDGFVVGEV 442
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: A0A836TJ69_9GAMM (MATE family efflux transporter n=1 Tax=Thiotrichaceae bacterium TaxID=2030882 RepID=A0A836TJ69_9GAMM) HSP 1 Score: 145 bits (367), Expect = 2.670e-39 Identity = 70/123 (56.91%), Postives = 86/123 (69.92%), Query Frame = 1
Query: 1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRGGFV 369
WS VF + FTL Y L+G+ +IN LT+++ VR A YL W V PLISVWCF+ DGIFIGAT G +MRNSMLI + F+P W V Q GNHGLW AF LF A RGV++G Y+ I+R GF+
Sbjct: 320 WSFVFGMCFTLFYWLLGEGMINLLTNIEPVREVALLYLPWMVVLPLISVWCFLLDGIFIGATRGPEMRNSMLICTFVFFLPLWYVFQYLGNHGLWLAFTLFIAIRGVTLGIYYYLIERNQGFI 442
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: A0A3B0YTY5_9ZZZZ (DNA-damage-inducible protein F n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B0YTY5_9ZZZZ) HSP 1 Score: 142 bits (359), Expect = 3.760e-38 Identity = 67/120 (55.83%), Postives = 90/120 (75.00%), Query Frame = 1
Query: 1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRG 360
WS FA+LF YA G +I L+D+D+VR AA+ YL+W+ PL++VW ++FDGIFIGAT +MRN+ML++++ VF+PAW +LQ +GNHGLWAA MLF AARGV+M W F + RRG
Sbjct: 318 WSLGFALLFVGLYAFAGPWMIMQLSDIDAVREAAEEYLIWSIFMPLVAVWGYLFDGIFIGATRAREMRNTMLLSTLLVFLPAWWLLQPWGNHGLWAALMLFMAARGVTMAWSFRLLVRRG 437
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: A0A2P7QXW9_9GAMM (MATE family efflux transporter DinF n=2 Tax=Zobellella taiwanensis TaxID=347535 RepID=A0A2P7QXW9_9GAMM) HSP 1 Score: 139 bits (351), Expect = 6.640e-37 Identity = 62/125 (49.60%), Postives = 84/125 (67.20%), Query Frame = 1
Query: 1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRGGFVPA 375
W V A+LF L +AL G+A+I +T +D VR A YL W PL++ WCF+ DGIFIG T G +MR+ MLI+++GVF P W + Q GNHGLW A + F AARG+++GW + R+D +G F A
Sbjct: 322 WGAVVAVLFALLFALAGEAMIVRITSIDVVREQAFRYLPWLVAMPLVACWCFILDGIFIGTTRGREMRDMMLISTLGVFFPVWWLAQPLGNHGLWLAMLCFMAARGLTLGWAWWRLDGKGHFYRA 446
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: A0A235CG73_9GAMM (MATE family efflux transporter DinF n=3 Tax=Oceanimonas baumannii TaxID=129578 RepID=A0A235CG73_9GAMM) HSP 1 Score: 138 bits (348), Expect = 1.730e-36 Identity = 61/125 (48.80%), Postives = 85/125 (68.00%), Query Frame = 1
Query: 1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRGGFVPA 375
W G+ A+LFTL + L G+ L++ +T + SVR A +L W PL+S WCFV DGIFIGAT G MRN ML++++GVF P W + Q+ GNH LW A + F AARG+++ W + ++D R FVP+
Sbjct: 323 WGGLVAVLFTLVFWLAGKQLVDQITSIYSVRQQAYGFLPWLVAMPLVSCWCFVLDGIFIGATQGRAMRNMMLLSALGVFFPVWWLSQSMGNHALWLAMLCFMAARGLTLAWAWWQLDERCAFVPS 447
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: UPI001FE05B8A (MATE family efflux transporter DinF n=1 Tax=Oceanimonas smirnovii TaxID=264574 RepID=UPI001FE05B8A) HSP 1 Score: 138 bits (347), Expect = 1.930e-36 Identity = 61/127 (48.03%), Postives = 86/127 (67.72%), Query Frame = 1
Query: 1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRGGFVPAEL 381
W + A+LFTL + L G+ L+ +T ++SV+ A +L W PL+S WCFV DGIFIGAT G MRN ML++++GVF P W + Q+ GNH LW A + F AARG+++GW + ++D+R FVP L
Sbjct: 305 WGLLVAVLFTLVFWLAGKPLVGQITSIESVQQQAYGFLPWLVAMPLVSCWCFVLDGIFIGATQGRAMRNMMLVSTLGVFFPVWWLSQSLGNHALWLAMLCFMAARGLTLGWAWWQLDQRRAFVPDGL 431
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Match: A0A523LFN4_9GAMM (MATE family efflux transporter DinF n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523LFN4_9GAMM) HSP 1 Score: 138 bits (347), Expect = 2.530e-36 Identity = 64/122 (52.46%), Postives = 88/122 (72.13%), Query Frame = 1
Query: 1 WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWCFVFDGIFIGATLGAQMRNSMLIASVGVFVPAWTVLQTFGNHGLWAAFMLFFAARGVSMGWYFLRIDRRGGF 366
W+ A+LF+L YA++G +I+ +TD+D VRA A YL W VSPLISVW F+ DG+FIGAT G +MRN+ML++ + ++PAW +LQ GNHGLW A M+F AAR ++MGW + R+ R F
Sbjct: 322 WAAGVALLFSLIYAVVGGLIIDLITDIDRVRAMARIYLPWIIVSPLISVWSFLLDGVFIGATRGREMRNTMLVSVLVFYLPAWYLLQPLGNHGLWMALMVFMAARALTMGWSWRRLLRTDAF 443 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111810.2468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig111810.2468.1 >prot_M-pyrifera_M_contig111810.2468.1 ID=prot_M-pyrifera_M_contig111810.2468.1|Name=mRNA_M-pyrifera_M_contig111810.2468.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=129bp WSGVFAILFTLAYALMGQALINTLTDLDSVRAAADSYLVWAAVSPLISVWback to top mRNA from alignment at M-pyrifera_M_contig111810:199..585- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig111810.2468.1 ID=mRNA_M-pyrifera_M_contig111810.2468.1|Name=mRNA_M-pyrifera_M_contig111810.2468.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=387bp|location=Sequence derived from alignment at M-pyrifera_M_contig111810:199..585- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig111810:199..585- >mRNA_M-pyrifera_M_contig111810.2468.1 ID=mRNA_M-pyrifera_M_contig111810.2468.1|Name=mRNA_M-pyrifera_M_contig111810.2468.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=774bp|location=Sequence derived from alignment at M-pyrifera_M_contig111810:199..585- (Macrocystis pyrifera P11B4 male)back to top |