mRNA_M-pyrifera_M_contig111791.2464.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111791.2464.1
Unique NamemRNA_M-pyrifera_M_contig111791.2464.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111791.2464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111791contigM-pyrifera_M_contig111791:63..554 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score73.9
Seed ortholog evalue7.6e-11
Seed eggNOG ortholog1122165.AUHS01000011_gene2577
Hectar predicted targeting categoryother localisation
EggNOG OGs1JC8R@118969,1PCEW@1224,1SXF1@1236,2A4BA@1,30SWX@2
Best tax levelLegionellales
Best eggNOG OGNA|NA|NA
Exons1
Model size492
Cds size492
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.293035-CDS-M-pyrifera_M_contig111791:62..5541622815631.293035-CDS-M-pyrifera_M_contig111791:62..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111791 63..554 -
1692277496.1797616-CDS-M-pyrifera_M_contig111791:62..5541692277496.1797616-CDS-M-pyrifera_M_contig111791:62..554Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111791 63..554 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111791.2464.1prot_M-pyrifera_M_contig111791.2464.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111791 63..554 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111791.2464.1

>prot_M-pyrifera_M_contig111791.2464.1 ID=prot_M-pyrifera_M_contig111791.2464.1|Name=mRNA_M-pyrifera_M_contig111791.2464.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=164bp
PKSNPHDYHAGQTAAIQEANNAFLPLMVKNDRRMCSHMRKSHAPTVKNGY
TVEVKAVNADGNEHKMHYVRAGTIVYVGKHESKAKLLEQTEENLIQIKMA
INARPEMRENNGLHVQILNTHSLVQRGQKQHIMVKMTREATKNTENGFSY
TPVNPEGTLHFVQV
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mRNA from alignment at M-pyrifera_M_contig111791:63..554-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111791.2464.1 ID=mRNA_M-pyrifera_M_contig111791.2464.1|Name=mRNA_M-pyrifera_M_contig111791.2464.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig111791:63..554- (Macrocystis pyrifera P11B4 male)
CCAAAATCAAACCCACATGATTATCATGCGGGTCAAACTGCAGCAATTCA
AGAAGCTAACAATGCCTTCCTGCCACTAATGGTCAAGAATGATCGCCGCA
TGTGCTCACATATGCGTAAAAGTCATGCTCCAACTGTTAAAAATGGTTAT
ACGGTTGAAGTTAAGGCTGTTAACGCTGACGGTAATGAGCACAAAATGCA
TTACGTGCGTGCTGGTACAATCGTCTATGTTGGTAAACATGAAAGTAAGG
CCAAGTTGCTCGAGCAAACAGAAGAGAACTTAATACAAATTAAAATGGCA
ATTAATGCGCGTCCCGAAATGCGAGAAAATAATGGATTGCATGTGCAAAT
TTTAAATACGCATTCGCTAGTTCAGCGTGGGCAGAAGCAGCATATTATGG
TGAAGATGACTCGTGAAGCCACAAAAAATACAGAAAATGGGTTTTCTTAT
ACCCCGGTTAATCCAGAGGGAACGTTACACTTTGTTCAAGTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111791:63..554-

>mRNA_M-pyrifera_M_contig111791.2464.1 ID=mRNA_M-pyrifera_M_contig111791.2464.1|Name=mRNA_M-pyrifera_M_contig111791.2464.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig111791:63..554- (Macrocystis pyrifera P11B4 male)
CCAAAATCAAACCCACATGATTATCATGCGGGTCAAACTGCAGCAATTCA
AGAAGCTAACAATGCCTTCCTGCCACTAATGGTCAAGAATGATCGCCGCA
TGTGCTCACATATGCGTAAAAGTCATGCTCCAACTGTTAAAAATGGTTAT
ACGGTTGAAGTTAAGGCTGTTAACGCTGACGGTAATGAGCACAAAATGCA
TTACGTGCGTGCTGGTACAATCGTCTATGTTGGTAAACATGAAAGTAAGG
CCAAGTTGCTCGAGCAAACAGAAGAGAACTTAATACAAATTAAAATGGCA
ATTAATGCGCGTCCCGAAATGCGAGAAAATAATGGATTGCATGTGCAAAT
TTTAAATACGCATTCGCTAGTTCAGCGTGGGCAGAAGCAGCATATTATGG
TGAAGATGACTCGTGAAGCCACAAAAAATACAGAAAATGGGTTTTCTTAT
ACCCCGGTTAATCCAGAGGGAACGTTACACTTTGTTCAAGTCCCAAAATC
AAACCCACATGATTATCATGCGGGTCAAACTGCAGCAATTCAAGAAGCTA
ACAATGCCTTCCTGCCACTAATGGTCAAGAATGATCGCCGCATGTGCTCA
CATATGCGTAAAAGTCATGCTCCAACTGTTAAAAATGGTTATACGGTTGA
AGTTAAGGCTGTTAACGCTGACGGTAATGAGCACAAAATGCATTACGTGC
GTGCTGGTACAATCGTCTATGTTGGTAAACATGAAAGTAAGGCCAAGTTG
CTCGAGCAAACAGAAGAGAACTTAATACAAATTAAAATGGCAATTAATGC
GCGTCCCGAAATGCGAGAAAATAATGGATTGCATGTGCAAATTTTAAATA
CGCATTCGCTAGTTCAGCGTGGGCAGAAGCAGCATATTATGGTGAAGATG
ACTCGTGAAGCCACAAAAAATACAGAAAATGGGTTTTCTTATACCCCGGT
TAATCCAGAGGGAACGTTACACTTTGTTCAAGTC
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