mRNA_M-pyrifera_M_contig111785.2462.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111785.2462.1
Unique NamemRNA_M-pyrifera_M_contig111785.2462.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig111785.2462.1 vs. uniprot
Match: A0A433Q7W8_9FUNG (U3 small nucleolar RNA-associated protein 6-domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433Q7W8_9FUNG)

HSP 1 Score: 89.4 bits (220), Expect = 7.350e-19
Identity = 49/99 (49.49%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 MADTVQYFLEEMVPELQQLLKRGIFTESEVRMIAKERRGHEYRLKSKNVQLADFLRYIEYETNLNKLRKVR-LRMKNITKKSELAKFSGVKRIHFLFIR 294
            MADTVQY+LE+MVPEL+ L ++GIF+++E++ I K+R   EY LK +  +  D+LRY EYE NL  LRK R +R+   + K+ L+ ++GV+RI+F+F R
Sbjct:    1 MADTVQYYLEQMVPELEDLEQKGIFSKAEIKSIVKKRTKFEYALKRRISKKVDYLRYAEYEMNLEALRKKRKVRLDIKSNKTSLSDYAGVRRIYFIFER 99
[Close]
BLAST of mRNA_M-pyrifera_M_contig111785.2462.1 vs. uniprot
Match: A0A433PH79_9FUNG (U3 small nucleolar RNA-associated protein 6-domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PH79_9FUNG)

HSP 1 Score: 89.7 bits (221), Expect = 7.980e-19
Identity = 51/99 (51.52%), Postives = 72/99 (72.73%), Query Frame = 1 
Query:    1 MADTVQYFLEEMVPELQQLLKRGIFTESEVRMIAKERRGHEYRLKSKNVQLADFLRYIEYETNLNKLRKVR-LRMKNITKKSELAKFSGVKRIHFLFIR 294
            MADTVQY+LE+MVPEL+ L ++GIF++ E++ I K+R   EY LK +  +  DFLRYIEYE NL  LRK R +R+   + K  L+ ++GV+RI+F+F R
Sbjct:    1 MADTVQYYLEQMVPELEDLEQKGIFSKVEIKSIVKKRTKFEYALKRRIPKKIDFLRYIEYEMNLEALRKKRKVRLDIKSNKVSLSDYAGVRRIYFIFER 99
[Close]
BLAST of mRNA_M-pyrifera_M_contig111785.2462.1 vs. uniprot
Match: A0A433A2E5_9FUNG (U3 small nucleolar RNA-associated protein 6-domain-containing protein n=2 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433A2E5_9FUNG)

HSP 1 Score: 89.4 bits (220), Expect = 1.080e-18
Identity = 49/99 (49.49%), Postives = 73/99 (73.74%), Query Frame = 1 
Query:    1 MADTVQYFLEEMVPELQQLLKRGIFTESEVRMIAKERRGHEYRLKSKNVQLADFLRYIEYETNLNKLRKVR-LRMKNITKKSELAKFSGVKRIHFLFIR 294
            MADTVQY+LE+MVPEL+ L ++GIF+++E++ I K+R   EY LK +  +  D+LRY EYE NL  LRK R +R+   + K+ L+ ++GV+RI+F+F R
Sbjct:    1 MADTVQYYLEQMVPELEDLEQKGIFSKAEIKSIVKKRTKFEYALKRRISKKVDYLRYAEYEMNLEALRKKRKVRLDIKSNKTSLSDYAGVRRIYFIFER 99
[Close]
BLAST of mRNA_M-pyrifera_M_contig111785.2462.1 vs. uniprot
Match: A0A397JF96_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397JF96_9GLOM)

HSP 1 Score: 86.7 bits (213), Expect = 1.590e-18
Identity = 47/98 (47.96%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:    1 MADTVQYFLEEMVPELQQLLKRGIFTESEVRMIAKERRGHEYRLKSKNVQLADFLRYIEYETNLNKLRKVRLRMKNITKKSELAKFSGVKRIHFLFIR 294
            MA+TVQ+ LE+M+PEL+ L K+GIFT+ E++ I K+R   EY LK +  Q+ DFL+YIEYE NL KLRK R     I  K+ L+ ++  +RI++++ R
Sbjct:    1 MAETVQFNLEQMIPELKDLEKKGIFTKKEIKDIIKKRSNFEYALKRRPTQVKDFLKYIEYEMNLEKLRKKRKDRLGIKGKATLSDYAITRRIYYIYDR 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig111785.2462.1 vs. uniprot
Match: A0A197K993_9FUNG (Uncharacterized protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K993_9FUNG)

HSP 1 Score: 88.2 bits (217), Expect = 2.760e-18
Identity = 50/99 (50.51%), Postives = 75/99 (75.76%), Query Frame = 1 
Query:    1 MADTVQYFLEEMVPELQQLLKRGIFTESEVRMIAKERRGHEYRLKSKNVQLADFLRYIEYETNLNKLRKVR-LRMKNITKKSELAKFSGVKRIHFLFIR 294
            MADTVQ+++EEM+PE++ L ++GIF+++E++ I K+R+  EY LK +  + ADFLRYIEYE NL  LRK R  RM + TKKS ++ ++G +RI F++ R
Sbjct:    1 MADTVQFYMEEMIPEMRDLEQKGIFSKTEIKSIIKQRQKFEYALKRRISKKADFLRYIEYEMNLEALRKKRRARMVSDTKKS-ISDYAGPRRIFFIYKR 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig111785.2462.1 vs. uniprot
Match: A0A1Y1Y702_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y702_9FUNG)

HSP 1 Score: 87.0 bits (214), Expect = 6.970e-18
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 1 
Query:    1 MADTVQYFLEEMVPELQQLLKRGIFTESEVRMIAKERRGHEYRLKSKNVQLADFLRYIEYETNLNKLRKVRLRMKNITKKSELAKFSGVKRIHFLFIR 294
            MADTVQY LE M+PEL+ L K+ IF + E+R I K+R   EY LK ++ +  D+LRYIEYE NL  LRK R    +I  K  ++ ++G +R++F+F R
Sbjct:    1 MADTVQYHLENMIPELEDLEKKKIFNKEEIRSIVKKRTNFEYALKRRSPKKIDYLRYIEYELNLENLRKKRKARLDIKGKPSVSDYAGPRRVNFIFER 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig111785.2462.1 vs. uniprot
Match: A0A2J8A647_9CHLO (U3 small nucleolar RNA-associated protein 6 n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A647_9CHLO)

HSP 1 Score: 87.0 bits (214), Expect = 7.110e-18
Identity = 48/98 (48.98%), Postives = 68/98 (69.39%), Query Frame = 1 
Query:    1 MADTVQYFLEEMVPELQQLLKRGIFTESEVRMIAKERRGHEYRLKSKNVQLADFLRYIEYETNLNKLRKVRLRMKNITKKSELAKFSGVKRIHFLFIR 294
            MADTVQY +E+M+PEL++L ++G FT SEV+ IA +R+  EY LK +     DF RYIE+ET L +LRK R +  +   K  LA+ + V+RIHF++ R
Sbjct:    1 MADTVQYLMEQMIPELEELEEKGYFTRSEVKKIAHKRQTFEYLLKRRAALKEDFYRYIEFETKLEELRKTRKQAASAKGKKGLAEVAIVRRIHFIYER 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig111785.2462.1 vs. uniprot
Match: A0A397J4P0_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397J4P0_9GLOM)

HSP 1 Score: 86.7 bits (213), Expect = 8.410e-18
Identity = 47/98 (47.96%), Postives = 69/98 (70.41%), Query Frame = 1 
Query:    1 MADTVQYFLEEMVPELQQLLKRGIFTESEVRMIAKERRGHEYRLKSKNVQLADFLRYIEYETNLNKLRKVRLRMKNITKKSELAKFSGVKRIHFLFIR 294
            MA+TVQ+ LE+M+PEL+ L K+GIFT+ E++ I K+R   EY LK +  Q+ DFL+YIEYE NL KLRK R     I  K+ L+ ++  +RI++++ R
Sbjct:    1 MAETVQFNLEQMIPELKDLEKKGIFTKKEIKDIIKKRSNFEYALKRRPTQVKDFLKYIEYEMNLEKLRKKRKDRLGIKGKATLSDYAITRRIYYIYDR 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig111785.2462.1 vs. uniprot
Match: A0A1Y2GVG3_9FUNG (U3 small nucleolar RNA-associated protein 6-domain-containing protein n=1 Tax=Lobosporangium transversale TaxID=64571 RepID=A0A1Y2GVG3_9FUNG)

HSP 1 Score: 85.9 bits (211), Expect = 1.790e-17
Identity = 49/99 (49.49%), Postives = 74/99 (74.75%), Query Frame = 1 
Query:    1 MADTVQYFLEEMVPELQQLLKRGIFTESEVRMIAKERRGHEYRLKSKNVQLADFLRYIEYETNLNKLRKVR-LRMKNITKKSELAKFSGVKRIHFLFIR 294
            MADTVQ+++EEM+PEL+ L ++GIF++ E++ I K+R   EY LK +  + AD+LRYIEYE NL  LRK R  RM + TK+S ++ ++G +RI+F++ R
Sbjct:    1 MADTVQFYMEEMIPELRDLEQKGIFSKKEIQSIIKKREKFEYALKRRISKKADYLRYIEYEMNLEALRKKRRARMVSNTKQS-ISDYAGQRRIYFIYKR 98
[Close]
BLAST of mRNA_M-pyrifera_M_contig111785.2462.1 vs. uniprot
Match: A0A383V7Q6_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383V7Q6_TETOB)

HSP 1 Score: 85.9 bits (211), Expect = 1.800e-17
Identity = 48/99 (48.48%), Postives = 70/99 (70.71%), Query Frame = 1 
Query:    1 MADTVQYFLEEMVPELQQLLKRGIFTESEVRMIAKERRGHEYRLKSKNVQLADFLRYIEYETNLNKLRKVRLR-MKNITKKSELAKFSGVKRIHFLFIR 294
            MADTV+Y +EEM+PEL+ ++K+  F++ EV+ I K R+  EY LK ++V   DFLRYIEYE+ L +LR+ R + +    KK  LA ++ V+RIHF+F R
Sbjct:    1 MADTVRYMMEEMIPELEDMVKQQYFSKQEVKQIVKRRQDFEYLLKRRSVLKEDFLRYIEYESKLEELRQHRRKGLDTRGKKKSLADYAIVRRIHFIFER 99
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111785.2462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A433Q7W8_9FUNG7.350e-1949.49U3 small nucleolar RNA-associated protein 6-domain... [more]
A0A433PH79_9FUNG7.980e-1951.52U3 small nucleolar RNA-associated protein 6-domain... [more]
A0A433A2E5_9FUNG1.080e-1849.49U3 small nucleolar RNA-associated protein 6-domain... [more]
A0A397JF96_9GLOM1.590e-1847.96Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A197K993_9FUNG2.760e-1850.51Uncharacterized protein n=1 Tax=Linnemannia elonga... [more]
A0A1Y1Y702_9FUNG6.970e-1847.96Uncharacterized protein n=1 Tax=Basidiobolus meris... [more]
A0A2J8A647_9CHLO7.110e-1848.98U3 small nucleolar RNA-associated protein 6 n=1 Ta... [more]
A0A397J4P0_9GLOM8.410e-1847.96Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A1Y2GVG3_9FUNG1.790e-1749.49U3 small nucleolar RNA-associated protein 6-domain... [more]
A0A383V7Q6_TETOB1.800e-1748.48Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111785contigM-pyrifera_M_contig111785:2..295 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score87.4
Seed ortholog evalue4e-15
Seed eggNOG ortholog588596.U9T7E1
Preferred nameUTP6
KEGG koko:K14557
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034388,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.u3 small nucleolar rna-associated protein 6
EggNOG OGs38FXE@33154,3NYHC@4751,COG5191@1,KOG2396@2759
COG Functional cat.S
Best tax levelFungi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons1
Model size294
Cds size294
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815631.1928313-CDS-M-pyrifera_M_contig111785:1..2951622815631.1928313-CDS-M-pyrifera_M_contig111785:1..295Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111785 2..295 -
1692277496.146243-CDS-M-pyrifera_M_contig111785:1..2951692277496.146243-CDS-M-pyrifera_M_contig111785:1..295Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111785 2..295 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111785.2462.1prot_M-pyrifera_M_contig111785.2462.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111785 2..295 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111785.2462.1

>prot_M-pyrifera_M_contig111785.2462.1 ID=prot_M-pyrifera_M_contig111785.2462.1|Name=mRNA_M-pyrifera_M_contig111785.2462.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
MADTVQYFLEEMVPELQQLLKRGIFTESEVRMIAKERRGHEYRLKSKNVQ
LADFLRYIEYETNLNKLRKVRLRMKNITKKSELAKFSGVKRIHFLFIR
back to top

mRNA from alignment at M-pyrifera_M_contig111785:2..295-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111785.2462.1 ID=mRNA_M-pyrifera_M_contig111785.2462.1|Name=mRNA_M-pyrifera_M_contig111785.2462.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig111785:2..295- (Macrocystis pyrifera P11B4 male)
ATGGCAGACACAGTGCAGTACTTCCTCGAGGAGATGGTGCCGGAGCTGCA
GCAGCTGCTCAAGCGCGGCATCTTCACGGAGAGCGAAGTGCGGATGATCG
CAAAGGAGCGGAGAGGGCACGAGTACCGGCTGAAGAGCAAAAACGTGCAG
CTGGCCGACTTCCTGCGCTACATCGAGTACGAGACCAACCTCAACAAACT
ACGCAAGGTGCGCCTCCGCATGAAGAACATCACCAAGAAGTCGGAATTGG
CCAAGTTCTCTGGCGTGAAGCGCATTCACTTCCTCTTCATCAGG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig111785:2..295-

>mRNA_M-pyrifera_M_contig111785.2462.1 ID=mRNA_M-pyrifera_M_contig111785.2462.1|Name=mRNA_M-pyrifera_M_contig111785.2462.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig111785:2..295- (Macrocystis pyrifera P11B4 male)
ATGGCAGACACAGTGCAGTACTTCCTCGAGGAGATGGTGCCGGAGCTGCA
GCAGCTGCTCAAGCGCGGCATCTTCACGGAGAGCGAAGTGCGGATGATCG
CAAAGGAGCGGAGAGGGCACGAGTACCGGCTGAAGAGCAAAAACGTGCAG
CTGGCCGACTTCCTGCGCTACATCGAGTACGAGACCAACCTCAACAAACT
ACGCAAGGTGCGCCTCCGCATGAAGAACATCACCAAGAAGTCGGAATTGG
CCAAGTTCTCTGGCGTGAAGCGCATTCACTTCCTCTTCATCAGGATGGCA
GACACAGTGCAGTACTTCCTCGAGGAGATGGTGCCGGAGCTGCAGCAGCT
GCTCAAGCGCGGCATCTTCACGGAGAGCGAAGTGCGGATGATCGCAAAGG
AGCGGAGAGGGCACGAGTACCGGCTGAAGAGCAAAAACGTGCAGCTGGCC
GACTTCCTGCGCTACATCGAGTACGAGACCAACCTCAACAAACTACGCAA
GGTGCGCCTCCGCATGAAGAACATCACCAAGAAGTCGGAATTGGCCAAGT
TCTCTGGCGTGAAGCGCATTCACTTCCTCTTCATCAGG
back to top